Ecology and Evolutionary Biology Commons^™

Primnoa Pacifica Reproduction In Shallow Versus Deep Habitats Of Glacier Bay National Park And Preserve, Alaska, Ciara N. Larence

Honors College

Primnoa pacifica is a species of deep-sea cold-water coral that can be found in Glacier Bay National Park and Preserve in Alaska. These colonies are important to their ecosystem as they provide habitat for other species living in this area. One thing that makes P. pacifica important to study is that the species displays deep-water emergence. This is a phenomenon where species normally found in deep waters can exist in shallower waters, allowing easier access for research. The purpose of this thesis was to determine if depth effects the reproduction of male P. pacifica colonies. Two colonies from deep depths …

American Burying Beetle, Plant Richness, And Soil Property Responses To Collapse Of Juniperus Virginiana Woodlands With Fire, Alison Ludwig

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Grasslands are declining in the Great Plains due to land use changes, woody plant encroachment, and loss of historic fire cycles. Prescribed burn associations have utilized prescribed fire to collapse invading woodlands and allow the restoration of grasslands. This fire is considered “extreme” because it is capable of changing the structure and function of an ecosystem. Our study site is the Loess Canyons Experimental Landscape, a long-term, ecoregion-scale experiment to apply prescribed fire across the region to restore grasslands. The Nebraska Natural Legacy Project established the Loess Canyons ecoregion as a Biologically-Unique Landscape in 2005 with the state’s wildlife action …

Effects Of Glacial Stressors On Sperm Maturation In Colonies Of The Red Tree Coral, Primnoa Pacifica, Joshua Lynn

Honors College

The red tree coral, Primnoa pacifica, is a large, colony forming species of cold- water coral which is often an important habitat for many commercially important species of fish and crab. This keystone species is long lived and found at much shallower depths in the fjords of Glacier Bay National Park (GBNP) than elsewhere in the northern Pacific Ocean because of the phenomenon known as deep-water emergence. Due to their proximity to tidewater glaciers in GBNP, corals likely have to endure glacial stressors such as freshwater runoff and sedimentation that is not typical of populations in deeper water, which …

Phylogenomics Of Alligator Lizards Elucidate Diversification Patterns Across The Mexican Transition Zone And Support The Recognition Of A New Genus, Christopher Blair, Robert W. Bryson Jr, Uri O. García-Vázquez, Adrián Nieto-Montes De Oca, David Lazcano, John E. Mccormack, John Klicka

Publications and Research

Genomic data continue to advance our understanding of species limits and biogeographic patterns. However, there is still no consensus regarding appropriate methods of phylogenomic analysis that make the best use of these heterogeneous data sets. In this study, we used thousands of ultraconserved element (UCE) loci from alligator lizards in the genus Gerrhonotus to compare and contrast species trees inferred using multiple contemporary methods and provide a time frame for biological diversification across the Mexican Transition Zone (MTZ). Concatenated maximum likelihood (ML) and Bayesian analyses provided highly congruent results, with differences limited to poorly supported nodes. Similar topologies were inferred …

Reconstructing Cyclical Browning In A Subtropical Lake From Diatoms, Meredith Emery

FIU Electronic Theses and Dissertations

Lakes are browning globally from increased inputs of colored dissolved organic carbon (cDOC) driven by climate and land-use change. Browning changes lake ecosystems, especially through reductions in water transparency. I used long-term limnological and plankton records and upper surface sediment diatom assemblages to infer a ~1600-year history of browning from diatom assemblages in a 166 cm core from a subtropical, oligotrophic lake known to experience cyclical browning related to climate oscillations. Diatom assemblages were strongly regulated by cDOC-driven transparency fluctuations in a 14-year plankton dataset (modern model, R² = 0.62) and in the upper 35 cm of sediments corresponding …

Center For Grassland Studies, November 2021

Center for Grassland Studies: Newsletters

Contents

Ranchers’ Preferences for Payment for Ecosystem Services Programs in Nebraska by Kyle Martens

Center for Grassland Studies Policy Advisory Committee

Director's Column by Walt Schacht (Interim Director)

Fall Army Worms Reared Their Ugly Heads and Wings in Nebraska in 2021by Roch Gaussoin

Dalbey-Halleck Open House by Margo McKendree

Internships – Let’s Get More Students on the Land! by Shelly Kelly

Jim Gerrish Insightful and Relatable for Grazing Livestock (GLS) Club Members

Invasion Genetics Of The Non-Native Geckos Phelsuma Grandis Gray 1870 And Gekko Gecko (Linnaeus 1758) In Southern Florida, Usa, Thomas William Fieldsend

FIU Electronic Theses and Dissertations

Biological invasions cause tremendous damage to ecosystems, economies, and human livelihoods worldwide. Florida is home to more established non-native species of reptiles and amphibians than anywhere else on Earth, many of which cause substantial harm to native biodiversity and human well-being. The relatively new discipline of invasion genetics promises to significantly improve the understanding, prediction, prevention, and management of biological invasions. The purpose of this dissertation is to utilize invasion genetics techniques to further understanding of the patterns and processes of biological invasions, especially as they pertain to Florida’s destructive and diverse non-native squamate reptile assemblage. In the first phase …

Free-Ranging And Feral Cats, Alex Dutcher, Kyle Pias, Grant Sizemore, Stephen M. Vantassel

Wildlife Damage Management Technical Series

Domestic cats (Felis catus) are a common household pet in the United States, with an estimated 25.4% of households owning cats (American Veterinary Medical Association 2018). While an increasing number of cat owners keep their pet cats exclusively indoors, a portion of society maintains that domestic cats are entitled to a free-ranging lifestyle and may even consider unowned domestic cats to be wildlife. Although wildlife managers recognize the beliefs of many concerned stakeholders, including advocates who use strong emotional appeals on behalf of cats, it remains that free-ranging and feral domestic cats are an invasive species spread by humans (Lowe …

A Ladder Of Endemicity: A Pioneering Study Of Anuran Communities Along An Elevational Gradient In The Eastern Andean Cloud Forests, Ecuador, Ella Halbert

Independent Study Project (ISP) Collection

Per unit of area, Ecuador is home to the most herpetofauna of any region on Earth, yet many ecosystems are under researched. Positioned between the Eastern Andes and the Amazon rainforest, the Río Pastaza Basin of Ecuador has been the recent focus of anuran biodiversity surveys and is home to many endemic species. This study aimed to determine how the anuran community composition of a vertical transect in the Llanganates National Park varied between elevations. A 7-day expedition was conducted along a new trail up Abitagua Range spanning 1,050 m in elevation. Each night, visual encounter surveys were employed to …

Center For Grassland Studies, September 2021

Center for Grassland Studies: Newsletters

Contents

Nebraska Grazing Conference Recap by Daren Redfearn

Center for Grassland Studies Policy Advisory Committee

Director's Column by Walt Schacht (Interim Director)

Land Use and Property Taxes by Jordan Johnson

Congratulations August 2021 Graduates

Wildfires are Changing the Future of Nebraska’s Woodland-Grassland Complexes by Amanda Hefner

PGA WORKS Scholarship Recipients Announced by PGA Reach

Grazing Livestock Systems Internships Provide Diverse Experience by Bryan Reiling

Jim Choquette Receives Lifetime Achievement Award

Otoliths Of South-Western Australian Fish: A Photographic Catalogue, Chris Dowling, Kim Smith, Elaine Lek, Joshua Brown

Fisheries research reports

Due to the species-specific nature of otoliths and given they are often the only part of the fish preserved when fish die, otolith catalogues can be used in numerous applications, such as diet studies in fish eating animals, including pinnipeds, fish and sea birds; archaeological purposes such as reconstructing indigenous people’s diets from otoliths found in middens or evolutionary history of fish species by comparing fossilized otoliths. Given the unique mixture of subtropical and temperate fish, including many endemic species that occur off the southwest corner of WA having a catalogue for this area is extremely important for people working …

Refining The Coarse Filter Approach: Using Habitat-Based Species Models To Identify Rarity And Vulnerabilities In The Protection Of U.S. Biodiversity, Anne Davidson, Leah Dunn, Kevin Gergely, Alexa Mckerrow, Steven Williams, Mackenzie Case

University Author Recognition Bibliography: 2021

Preserving biodiversity and its many components is a priority of conservation science and how to efficiently allocate resources to preserve healthy populations of as many species, habitats, and ecosystems as possible. We used the U.S. Geological Survey (USGS) Gap Analysis Project (GAP) species models released in 2018, which identify predicted habitats for terrestrial vertebrates in the conterminous United States, to illustrate hotspots of biodiversity for the major taxonomic groups. This collection represents the first complete compilation of terrestrial vertebrate species models for the conterminous United States (U.S. Geological Survey (USGS), 2018a). We used the species models but not the available …

Ichthyofaunal Utilization Of A Man-Made Salt Marsh Creak In Mission Bay, California, 25 Years After Creation, Maria Angst

McNair Summer Research Program

Southern California’s wetlands are drastically declining due to human activities. Increasingly, marsh restoration and creation are being used to mitigate such losses. This study used minnow traps to resample the ichthyofauna of a created marsh (Crown Point Mitigation Site; CPMS) and an adjacent natural marsh (Kendall Frost) in Mission Bay, California, 26 years following the marsh creation. These data were compared to data collected from 1995-1998, immediately after marsh creation. Fishes trapped included Fundulus parvipinnis, Gillichthys mirabilis, Ctenogobius sagittula, Atherinops affinis, and Mugil cephalus. Species richness and dominance measures were higher in the natural relative to the created marsh. The …

Nematode Biodiversity In Lincoln, Nebraska's Tallgrass Prairie Corridor, Abigail Borgmeier

Department of Plant Pathology: Dissertations, Theses, and Student Research

The tallgrass prairie was once one of the most diverse grasslands on the planet, however over 95% has been converted to agriculture in the past 150 years. The remaining prairie is still host to a wide variety of plants, insects, mammals, and soil-dwelling microorganisms, creating an incredibly complex ecosystem. The first aim of this study is to compare three approaches for the measurement of nematode diversity within a 10-mile-long protected prairie habitat corridor near Lincoln, Nebraska. The methods are 1) a traditional morphological analysis of 150 nematodes per study site, 2) a metabarcoding analysis using the 18S genetic marker of …

Developing Pandemic Comics For Youth Audiences, Judy Diamond, Amy Spiegel, Patricia Wonch Hill, Elizabeth Vanwormer, Judi M. Gaiashkibos, Bob Hall, Aaron Sutherlen, Julia Mcquillan

Publications of UNSM Staff and Affiliates

In spring 2020 our team received funding from the Rapid Response Research program of the National Science Foundation to develop comics that would help youth understand the COVID-19 pandemic. Our project built on a decade of expertise creating comics about the biology of viruses. In collaboration with virologists and artists, we developed three comic stories about COVID-19 during the pandemic and posted them on-line during the last half of 2020. The fictional narratives address fundamental issues in biology, virology, and network science, in order to help readers understand the complexities of living through a viral pandemic. The stories focus on …

The Biodiversity Of Freshwater Crustaceans Revealed By Taxonomy And Mitochondrial Dna Barcodes, Adrian Amelio Vasquez, Brittany L. Bonnici, Donna R. Kashian, Jorge Trejo-Martinez, Carol J. Miller, Jeffrey L. Ram

Physiology Faculty Research Publications

Cytochrome oxidase subunit I (COI) barcode sequences in this file were obtained from specimens collected by plankton net in western Lake Erie in 2012 & 2013, along with later specimens collected at various locations and times, including some collected in Belize in 2015. Methods and other details about these sequences are described in a paper by the same authors in a submitted publication (2021: URL to be given here when published). The right columns below contain additional notes on lengths of sequences, GenBank accession ID (when obtained), and annotation as to whether the sequence represents a new barcode for its …

Center For Grassland Studies, July 2021

Center for Grassland Studies: Newsletters

Contents

21st Nebraska Grazing Conference on the Horizon by Daren Redfearn

Center for Grassland Studies Policy Advisory Committee

Director's Column by Walt Schacht (Interim Director)

21st Annual Nebraska Grazing Conference Schedule, August 9-11, 2021

Club Officers Elected for FY 21-22 by Jessica Windh

2021 Fall Seminar Series Schedule

CGS Scholarships and Fellowship Awarded for FY 21-22

Congratulations May 2021 Graduates

Predictive Distributional Modeling Of Rare And Uncommon Stoneflies (Insecta: Plecoptera) Of The Central Appalachian Mountains Using Maximum Entropy, Phillip Nathaniel Hogan

Masters Theses & Specialist Projects

Predicting where rare species may be found is important in addressing and directing conservation efforts. Knowledge of the distribution for many of these taxa is often lacking or unknown altogether. The use of species distributional modeling fills gaps in this knowledge by predicting where a species may be present by taking a correlative approach between presence/pseudoabsences and environmental data. The aim of this study was to describe the distribution of several rare and uncommon aquatic insects using Maximum Entropy (MaxEnt) modeling as human influences within the central Appalachian Mountains are increasing and isolating pockets of biodiversity. Species distribution modeling of …

Dna Barcoding Of The High-Altitude Artemisia And Nepeta Species, Vyacheslav Dushenkov, Csanad Gurdon, Shukhratdzhon Satorov

Publications and Research

DNA barcoding was performed for four medicinal plant species from the mountain region of Tajikistan. The nucleotide sequences for Artemisia sieberi, Artemisia scoparia, Artemisia vulgaris, and Nepeta glutinosa were deposited into the GenBank at the National Center for Biotechnology Information.

James Davidson Fawcett (1933–2020): Imbibing With The Kiwi., Louis A. Somma

Papers in Herpetology

An obituary and summary of the life of James D. Fawcett (1933-2020), herpetologist and instructor and professor of Biology at University of Nebraska at Omaha 1972-2015. Includes bibliography of his works, list of master's theses chaired, and recollections of former students.

Gray Wolves, Eric Gese, John P. Hart, Patricia Terletzky

Wildlife Damage Management Technical Series

Wolf conflicts are primarily related to predation on livestock, pets and other domestic animals, as well as their direct and indirect impacts on native ungulates (i.e., big game). Economic losses vary widely with some livestock producers facing high levels of depredation in some areas. This publication focuses on wolf ecology, damage, and management, particularly as it relates to wolf depredation on livestock and other conflicts with people.

Wolves and people share the same environments more than people realize. In the U.S., wolves are not confined to wilderness areas. Though curious, wolves generally fear people and rarely pose a threat to …

Center For Grassland Studies, May 2021

Center for Grassland Studies: Newsletters

Contents

Prescribed Burn Associations by Brian Teeter

Center for Grassland Studies Policy Advisory Committee

Director's Column by Walt Schact (Interim Director)

Looking for a Career in Conservation – How to Apply in USAJOBS for NRCS Positions by Mary Reece

Monitoring Sandhills Rangelands: A Key Step in Understanding Plant Community Dynamics by Mitch Stephenson

Development of Novel Plant Fluorescence Based Techniques for Remote Assessment of Grasslands and Pastures Health and Resilience by Anastasios Mazis

UNL PGA Golf Management Alumni Among Nebraska Section Award Winners by Brad Goetsch

Nebraska’s Grassland Legacy by Walt Schacht

Nebraska Grazing Conference: Save the Date, August 9-11, …

Vignette 12: The Blob, Nicholas Bond

Institute Publications

A marine heat wave of unprecedented severity, areal extent and duration occurred in the Northeast Pacific Ocean during 2014-2016. This event, known as the “Blob,” had a wide variety of far- ranging effects on physical, chemical, and biological ocean properties. Because the Blob was such a massive perturbation, it represents an attractively large signal for inquiry in the Salish Sea. It represents a dress rehearsal for typical conditions in future decades due to global climate change.

Vignette 01: The Salish Sea Estuary System, Bert Webber

Institute Publications

The Salish Sea is an estuarine ecosystem. Freshwater from land drainages mixes with the waters of the Pacific Ocean and results in water with a measurable, although sometimes small amount of freshwater. The Salish Sea is among the preeminent estuaries of North America. Estuarine circulation and flow are central to the high biological productivity in the Salish Sea.

Section 5: Cumulative Ecosystem Effects, Kathryn L. Sobocinski, Jennifer Boldt, Todd Sandell, Jaclyn Cleary, Michael Schmidt, Isobel Pearsall, Iris Kemp, Brian Riddell, Lynda V. Mapes

Institute Publications

Section 5 introduces cumulative effects and brings in brief case discussions focused on herring, salmon, and orcas. Understanding the layers of stressors the ecosystem faces is integral to gaining a full picture of declines in ecosystem function.

Vignette 03: Birds Of The Salish Sea, Rob Butler

Institute Publications

The significance of the Salish Sea comes into focus when we look at the diversity and abundance of its birds and mammals, some of which are globally, continentally, and nationally important. Of particular importance is the diversity and abundance of species on the Fraser River Delta. There are more species of birds on the delta than any comparable area in Canada, and nearly half of all 550 species of birds reported for British Columbia have been seen on the delta. Despite all that has been learned about marine birds and mammals, large areas of the Salish Sea in Canada have …

Vignette 07: Stormwater Effluent Exerts A Key Pressure On The Salish Sea, Emily Howe

Institute Publications

One of the primary terrestrial pressures on the Salish Sea estuarine and marine environment is urban stormwater runoff. When rainfall runs across hard, impervious surfaces, rather than soaking into the soil, it picks up and delivers toxic contaminants directly to nearby streams, rivers, and eventually the Salish Sea. In fact, for most toxic substances, surface runoff is the largest contributing source of loading to Puget Sound. Unfortunately, the Salish Sea’s relationship with stormwater effluent is no outlier; stormwater is the fastest growing cause of surface water impairment in the United States as urbanization transitions forested and other natural landscapes to …

The State Of The Salish Sea, Kathryn L. Sobocinski

Institute Publications

This report synthesizes information on past, current, and emerging stressors within the Salish Sea estuarine ecosystem. The Salish Sea is a complex waterbody shared by Coast Salish Tribes and First Nations, Canada, and the United States. It is defined by multiple freshwater inputs and marine water from the Pacific Ocean that mix in two primary basins, Puget Sound and the Strait of Georgia. Human impacts are multifaceted and extensive within the Salish Sea, with a regional population of almost 9 million people. Population growth has driven urbanization and development, which in turn has triggered structural changes to the landscape and …

Vignette 17: Salish Sea Jellyfish, Correigh Greene

Institute Publications

The Salish Sea is home to a diverse community of gelatinous zooplankton (or "jellies"). In their adult forms, jellies comprise a relatively large proportion of biomass in the Salish Sea. Questions regarding jellyfish abundance and climate variation in the Salish Sea have been difficult to address, in part because of a lack of consistent monitoring. Research presented in this vignette suggests that jellyfish are sensitive to climate signals like marine water temperatures, but do not appear to be systematically increasing in abundance over time. Due to advances in modeling, we may gain a better perspective on the roles jellies play …

Vignette 20: Fraser River Estuary In Need Of Urgent Intensive Care, Laura Kehoe, Tara G. Martin

Institute Publications

The Fraser River is the lifeline of the Salish Sea, influencing its stratification, circulation, and primary productivity. If we do not take strong action to conserve the Fraser River estuary, two-thirds of the species at risk in this region are predicted to have a less than 50% chance of survival. Many of the region's most iconic species could disappear. Conservation action combined with environmental governance is a pathway for a brighter future for the Fraser River and other highly contested regions.