Biology Commons^™

The Effect Of Media Composition On Nitrile Hydratase Activity And Stability, And On Cell Envelope Components Of Rhodococcus Dap 96253, Trudy-Ann Marie Tucker

Biology Dissertations

Rhodococcus is an important industrial organism that possesses diverse metabolic capabilities, it also has a unique cell envelope, composed of an outer layer of mycolic acids and glycolipids (free or bound lipids generally linked to the sugar trehalose). Rhodococcus is able to transform nitriles to the corresponding amide by the enzyme Nitrile Hydratase (NHase), therefore rhodococcal cells can be utilized as biocatalysts in the detoxification of nitrile waste water or in the production of industrially important amides such as acrylamide. However, the NHase within the native cells must be stable with high activity. This research examined how NHase activity and …

Characterization Of The Structure, Function And Assembly Of The Drrab Antibiotic Efflux Pump In Streptomyces Peucetius, Divya Kishore Rao

Biology Dissertations

ATP binding cassette (ABC) transporters constitute one of the largest families of transport proteins. The occurrence of multidrug resistance (MDR) in human cancer cells has been correlated with the over expression of human ABC, P-glycoprotein (Pgp). Streptomyces peucetius produces two anticancer agents, doxorubicin and daunorubicin, that belong to the anthracycline family of antibiotics. The organism is self-resistant to the potent effects of the antibiotics it produces due to the action of an efflux pump, DrrAB. Both Pgp and DrrAB carry out similar functions, but in two different cell types. An understanding of the bacterial drug transporter DrrAB is thus expected …

Comparative Study Of Hpv 16 And Hpv 18 Antibody Detection In Serum, Cervical Mucus, And Oral Mucosal Transudate, Emily Lauren Blalock

Biology Theses

Measuring HPV exposure relies on detection of HPV type-specific antibodies, but methods are not standardized. Additionally, there is little information on the best sample type for HPV antibody detection. This study validated pseudovirion neutralization (PVN) assay for HPV antibody detection and compared it to IgG ELISA. Both assays were applied to paired serum and cervical mucus samples. Additionally, PVN assay was utilized to evaluate the feasibility of oral mucosal transudate (OMT) samples to monitor the HPV immune response. Serum was more likely to be positive on PVN assay than on IgG ELISA (p= 0.025). Both assays correlated with HPV-16 DNA …

Signaling Mechanisms Regulating Neuronal Growth Cone Dynamics, Karine Tornieri

Biology Dissertations

During the development of the nervous system, neurons migrate to their final location and extend neurites that navigate long distances in the extracellular environment to reach their synaptic targets. The proper functioning of the nervous system depends on correct connectivity, and mistakes in the wiring of the nervous system lead to brain abnormalities and mental illness. Growth cones are motile structures located at the tip of extending neurites that sense and respond to guidance cues encountered along the path toward their targets. Binding of these cues to receptors located on growth cone filopodia and lamellipodia triggers intracellular signaling pathways that …

Two Leucine-Rich Repeat Receptor Kinases Mediate Signaling, Linking Cell Wall Biosynthesis And Acc Synthase In Arabidopsis, Shou-Ling Xu, Abidur Rahman, Tobias Baskin, Joseph J. Kieber

Tobias Baskin

The plant cell wall is a dynamic structure that changes in response to developmental and environmental cues through poorly understood signaling pathways. We identified two Leu-rich repeat receptor-like kinases in Arabidopsis thaliana that play a role in regulating cell wall function. Mutations in these FEI1 and FEI2 genes (named for the Chinese word for fat) disrupt anisotropic expansion and the synthesis of cell wall polymers and act additively with inhibitors or mutations disrupting cellulose biosynthesis. While FEI1 is an active protein kinase, a kinase-inactive version of FEI1 was able to fully complement the fei1 fei2 mutant. The expansion defect in …

Role Of Map Kinase In Fusarium Association With Contact Lenses, Brook Alicia Danboise

Biology Dissertations

Fusarium solani is a soil-borne pathogen devastating agricultural crops throughout the world. While most pathogens are host specific, the fusaria are able to infect both plants and animals. In 2004, an outbreak of Fusarium occurred in association with contact lens wear. Several species of Fusarium were involved but F. solani and F. oxysporum were most prominent. In this work, we have identified a MAP kinase (MAPK), highly similar to fmk1 in F. oxysporum, belonging to the YERK1 subfamily of extracellular regulated kinases. Directed disruption of fmk1 in F. solani AFR4 (FSSC 1) affected several aspects of fungal growth and pathogenicity. …

The Role Of Chemical Senses In Predation, Risk Assessment, And Social Behavior Of Spiny Lobsters, Shkelzen Shabani

Biology Dissertations

Chemical senses play a critical role in predator-prey and social interactions of many animals. Predators often evoke adaptive escape responses by prey, one of which is the release of chemicals that induce adaptive avoidance behaviors from both predators and conspecifics. I explore the use of chemicals in predator-prey and social interactions, using a crustacean model system, the spiny lobster. As predators, spiny lobsters are opportunistic, polyphagous feeders, and they rely heavily on their chemical senses during feeding. Some of their potential prey deter attacks through chemical defenses that act through the spiny lobsters’ chemical senses. An example of this is …

Fisheries Occasional Publication No.72 - Western Rock Lobster Ecological Effects Of Fishing Research Plan., Rhys Brown

Fisheries occasional publications

The commercial West Coast Rock Lobster Fishery (WCRLF) targets the western rock lobster (WRL), Panulirus cygnus, averaging approximately 10,000 tonnes of lobsters each year. Currently approximately 450 to 500 boats operate in the Fishery in waters ranging from 5 m to 200 m depth adjacent to the Western Australian coast and stretching from Cape Leeuwin in the south to Shark Bay in the north. The Fishery is managed by the Department of Fisheries (DoF) in Western Australia, using an input control system designed to constrain exploitation/fishing effort and deliver sustainable catches. The annual value of the catch is estimated at …

Molecular Characterisation Of A Bovine-Like Rotavirus Detected From A Giraffe, Emily Mulherin, Jill Bryan, Marijke Beltman, Luke O'Grady, Eugene Pidgeon, Lucie Garon, Andrew Lloyd, John Bainbridge, Helen O'Shea, Paul Whyte, Séamus Fanning

Department of Biological Sciences Publications

Background

Rotavirus (RV), is a member of the Reoviridae family and an important etiological agent of acute viral gastroenteritis in the young. Rotaviruses have a wide host range infecting a broad range of animal species, however little is known about rotavirus infection in exotic animals. In this paper we report the first characterisation of a RV strain from a giraffe calf.

Results

This report describes the identification and detailed molecular characterisation of a rotavirus strain detected from a 14-day-old Giraffe (Giraffa camelopardalis), presenting with acute diarrhea. The RV strain detected from the giraffe was characterized molecularly as G10P[11]. …

Melanocytes In The Developing And Adult Atrioventricular Valves Of The Murine Heart, Flavia Carneiro Brito

FIU Electronic Theses and Dissertations

The Neural Crest (NC) is a multipotential group of cells that arises from the dorsal aspect of the neural tube early in development. It is well established that a group of NC cells named Cardiac Neural Crest (CNC) migrates to the heart and plays a critical role in the remodeling of the aortic arch arteries and septation of the outflow tract. In this study, using the mouse mutant Pax3^sp/sp that has CNC deficits I have identified a putative novel role for the CNC in regulating apoptosis in the atrioventricular (AV) endocardial cushion. The AV endocardial cushion undergoes remodeling to …

Effect Of Post Composting On Vermicompost Of Spent Mushroom Substrate, Adi Ainurzaman Jamaludin, Noor Zalina Mahmood

Adi Ainurzaman Jamaludin

By using Lumbricus rubellus, vermicomposting started after 3 weeks of pre composting. Five treatments in different ratio of cow dung : spent mushroom substrate were prepared as feed materials with four replicates for each treatment namely; 80:20 (T1), 60:40 (T2), 50:50 (T3), 40:60 (T4) and 20:80 (T5). After 7 weeks of vermicomposting, macronutrient elements of vermicompost produced were measured and the process continues with composting when all the earthworms were taken out from the treatments. Macronutrient elements of compost produced were also measured after 20 weeks of composting. The data reveals that 7 weeks for vermicomposting of cow dung and …

Professor Bruce Criley To Retire, Rachel Hatch

News and Events

No abstract provided.

Crileys Reflect On Years With Illinois Wesleyan, Rachel Hatch

News and Events

No abstract provided.

Evolution Acts On Enhancer Organization To Fine-Tune Gradient Threshold Readouts, Justin Crocker, Yoichiro Tamori, Albert Erives

Dartmouth Scholarship

The elucidation of principles governing evolution of gene regulatory sequence is critical to the study of metazoan diversification. We are therefore exploring the structure and organizational constraints of regulatory sequences by studying functionally equivalent cis-regulatory modules (CRMs) that have been evolving in parallel across several loci. Such an independent dataset allows a multi-locus study that is not hampered by nonfunctional or constrained homology. The neurogenic ectoderm enhancers (NEEs) of Drosophila melanogaster are one such class of coordinately regulated CRMs. The NEEs share a common organization of binding sites and as a set would be useful to study the relationship …

Pseudomonas Aeruginosa Elastase Induces Il-8 Production In The Lung Cells Via The Epidermal Growth Factor/Extracellular Signal-Regulated Proteins/Nfîºb Pathway, Ali Azghani

Biology Faculty Publications and Presentations

Background: The induction of chemokine secretion by fibroblasts is crucial for the migration of leukocytes into the parenchyma of the injured lung. Several bacterial products activate the lung’s structural as well as immune cells to produce pro inflammatory cytokines and chemokines. We report that elastase from Pseudomonas aeruginosa (PE) evokes IL-8 mRNA expression and protein secretion in nonmalignant culture of human lung fibroblasts by activating the receptor for epidermal growth factor (EGFR) and downstream mitogen-activated protein kinases (MAPK) pathway. Methods: We utilized western blot analysis to detect phosphorylation of EGFR and signal transduction intermediates. Northern blot and ELISA analyses were …

Induction Of Plant Defense Gene Expression By Plant Activators And Pseudomonas Syringae Pv. Tomato In Greenhouse-Grown Tomatoes, Maryann Herman, J. K. Davidson, C. D. Smart

Biology Faculty/Staff Publications

Plant activators provide an appealing management option for bacterial diseases of greenhouse-grown tomatoes. Two types of plant activators, one that induces systemic acquired resistance (SAR) and a second that activates induced systemic resistance (ISR), were evaluated for control of Pseudomonas syringae pv. tomato and effect on plant defense gene activation. Benzothiadiazole (BTH, SAR-inducing compound) effectively reduced bacterial speck incidence and severity, both alone and in combination with the ISR-inducing product. Application of BTH also led to elevated activation of salicylic acid and ethylene-mediated responses, based on real-time polymerase chain reaction analysis of marker gene expression levels. In contrast, the ISR-inducing …

Neuroendocrine Peptides Neuropeptide-Y (Npy) And Peptide-Yy (Pyy) Suppress Cl- Secretion And K+ Secretion In Guinea Pig Distal Colon Through Action At Y2-Receptors, Susan T. Halm, Jin Zhang, Dan R. Halm

Neuroscience, Cell Biology & Physiology Faculty Publications

Electrogenic Cl^– and K⁺ secretion in isolated mucosa from guinea pig distal colon measured as short-circuit current (I_sc) and transepithelial conductance (G_t) were stimulated by epinephrine (epi), prostaglandin-E₂ (PGE₂) and carbachol (CCh). neuropeptide-Y (NPY) and peptide-YY (PYY) inhibited by 60% Cl^– secretion activated by either PGE₂ or PGE₂+CCh with EC₅₀’s of 16nM and 6nM, respectively. Neither peptide markedly inhibited the transient component of the PGE₂+CCh response. Immunoreactivity (IR) for NPY was present in enteric ganglia and in proximity with crypts. Basolateral membranes of …

Seasonal Changes In A Eutrophic Lake, Wilgreen Lake, Madison County, Kentucky, Richard D. Stockwell, Walter S. Borowski

EKU Faculty and Staff Scholarship

WilgreenLake (Madison County, Kentucky) covers ~169 acres, formed in 1966 by damming Taylor Fork. The Wilgreen watershed drains residential developments, modified woodlands, cattle pasture, and some industrial/urban areas in the city of Richmond. The lake is deemed “nutrient impaired” by the EPA.

Our main objective is to document the seasonal changes in key lake parameters from summer stratification through fall overturn over 4 months of sampling, August through November, 2008. We collect temperature, oxygen, pH, and conductivity data from 19 stations at depth intervals of 1 meter using an YSI multi-probe. Concurrent with collecting these framework data, we take water …

Spots Of Adult Male Red-Spotted Newts Are Redder And Brighter Than In Females: Evidence For A Role In Mate Selection?, Andrew K. Davis, Kristine L. Grayson

Biology Faculty Publications

As aquatic adults, eastern red-spotted newts (Notophthalmus v. viridescens) are generally green with two rows of dorsal spots, which vary in number between individuals and range in colour from orange to red. The function of these spots is unknown, but it is possible that they serve as sexual ornamentations and we examined this hypothesis by testing for sexual dimorphism in spot characteristics. We used an image analysis approach that has been used previously with this and other amphibian species to compare the number, size and colour – redness (hue score) and brightness – of spots in 100 male …

Ph-Induced Activation Of Arenavirus Membrane Fusion Is Antagonized By Small-Molecule Inhibitors, Joanne York, Dongcheng Dai, Sean M. Amberg, Jack H. Nunberg

Biological Sciences Faculty Publications

The arenavirus envelope glycoprotein (GPC) mediates viral entry through pH-induced membrane fusion in the endosome. This crucial process in the viral life cycle can be specifically inhibited in the New World arenaviruses by the small-molecule compound ST-294. Here, we show that ST-294 interferes with GPC-mediated membrane fusion by targeting the interaction of the G2 fusion subunit with the stable signal peptide (SSP). We demonstrate that amino acid substitutions at lysine-33 of the Junin virus SSP confer resistance to ST-294 and engender de novo sensitivity to ST-161, a chemically distinct inhibitor of the Old World Lassa fever virus. These compounds, as …

Genetic Change Following Fire In Populations Of A Seed-Banking Perennial Plant, Rebecca W. Dolan, Pedro F. Quintana-Ascencio, Eric S. Menges

Scholarship and Professional Work - LAS

Disturbances such as fire have the potential to remove genetic variation, but seed banks may counter this loss by restoring alleles through a reservoir effect. We used allozyme analysis to characterize genetic change in two populations of the perennial Hypericum cumulicola, an endemic of the fire-prone Florida scrub. We assessed genetic variation before and 1, 2, and 3 years after fire that killed nearly all aboveground plants. Populations increased in size following fire, with most seedlings likely recruited from a persistent seed bank. Four of five loci were variable. Most alleles were present in low frequencies, but our large sample …

Development And Plasticity Of The Retinocollicular Projection, Maria Magdalena Carrasco

Biology Dissertations

Brain development and function depend on intrinsic and extrinsic factors. In particular, the proper functioning of sensory systems can be altered according to the quality of extrinsic sensory information received during life. In this context, questions concerning neuroplasticity take on special relevance when considering that sensory experience has a big impact on the degree of plasticity of the brain. In this thesis, we have sought to understand how visual deprivation affects the development and maintenance of visual centers in the brain and the role of visual deprivation on plasticity throughout life. We have addressed this question by studying the retinocollicular …

The Impact Of Neonatal Inflammatory Insult On Adult Somatosensory Processing: The Role Of The Descending Nociceptive Circuit, Jamie L. Laprairie

Biology Dissertations

The neonatal period represents a critical window of increased neurodevelopmental plasticity in the immature nervous system. Unlike other sensory modalities, which require appropriate stimulation for proper development, maturation of nociceptive circuitry in neonates typically occurs in the absence of noxious stimulation. Premature infants, however, are routinely exposed to multiple invasive medical procedures during neonatal intensive care treatment, which are largely performed in the absence of anesthetics or analgesics. To date, it is largely unknown how exposure to early noxious insult during this time of increased plasticity alters the development of the CNS and influences future nociceptive responses. As previous studies …

Reflections On Recycling, Pollution And History Or, How To Beat The High Cost Of Living, Richard B. Philp

Richard B. Philp

Lessons learned during the Great Depression and World War II may have to be relearned. The three Rs (reduce, reuse and recycle) were essential then to individual and national survival. A fourth R, repair, was practised as well. These lessons, if relearned, will stand us in good stead when dealing with the current economic climate as well as with problems of pollution and global warming.

Transcriptional Response Of Mexican Axolotls To Ambystoma Tigrinum Virus (Atv) Infection, Jennifer D. Cotter, Andrew Storfer, Robert B. Page, Christopher K. Beachy, S. Randal Voss

Biology Faculty Publications

BACKGROUND: Very little is known about the immunological responses of amphibians to pathogens that are causing global population declines. We used a custom microarray gene chip to characterize gene expression responses of axolotls (Ambystoma mexicanum) to an emerging viral pathogen, Ambystoma tigrinum virus (ATV).

RESULT: At 0, 24, 72, and 144 hours post-infection, spleen and lung samples were removed for estimation of host mRNA abundance and viral load. A total of 158 up-regulated and 105 down-regulated genes were identified across all time points using statistical and fold level criteria. The presumptive functions of these genes suggest a robust innate immune …

Transcriptional Response Of Mexican Axolotls To Ambystoma Tigrinum Virus (Atv) Infection, Jennifer D. Cotter, Andrew Storfer, Robert B. Page, Christopher K. Beachy, S. Randal Voss

Biology Faculty Publications

Background

Very little is known about the immunological responses of amphibians to pathogens that are causing global population declines. We used a custom microarray gene chip to characterize gene expression responses of axolotls (Ambystoma mexicanum) to an emerging viral pathogen, Ambystoma tigrinum virus (ATV).

Result

At 0, 24, 72, and 144 hours post-infection, spleen and lung samples were removed for estimation of host mRNA abundance and viral load. A total of 158 up-regulated and 105 down-regulated genes were identified across all time points using statistical and fold level criteria. The presumptive functions of these genes suggest a robust …

Review Of The "Online Dictionary Of Invertebrate Zoology" From Parasites And Vectors, Les Chappell

Armand R. Maggenti Online Dictionary of Invertebrate Zoology

This is a very useful dictionary, one which I wish I had had access to when, as an undergraduate student of zoology, I was required to consult Hyman’s intensely erudite prose and needed serious assistance in the explication of countless seemingly obscure terms. ... I therefore recommend that all invertebrate zoologists, old or young, mark the URL for this dictionary in their favourites section and use it whenever an unfamiliar (or even supposedly familiar) term is encountered or used.

Calculating Expected Dna Remnants From Ancient Founding Events In Human Population Genetics, Nathan C. Sheffield, Keith A. Crandall, Andrew Stacey

Faculty Publications

Background- Recent advancements in sequencing and computational technologies have led to rapid generation and analysis of high quality genetic data. Such genetic data have achieved wide acceptance in studies of historic human population origins and admixture. However, in studies relating to small, recent admixture events, genetic factors such as historic population sizes, genetic drift, and mutation can have pronounced effects on data reliability and utility. To address these issues we conducted genetic simulations targeting influential genetic parameters in admixed populations. Results- We performed a series of simulations, adjusting variable values to assess the affect of these genetic parameters on current …

Intercourse Between Cell Wall And Cytoplasm Exemplified By Arabinogalactan Proteins And Cortical Microtubules, Azeddine Driouich, Tobias Baskin

Tobias Baskin

How does a plant cell sense and respond to the status of its cell wall? Intercourse between cell wall and cytoplasm has long been supposed to involve arabinogalactan proteins, in part because many of them are anchored to the plasma membrane. Disrupting arabinogalactan proteins has recently been shown to disrupt the array of cortical microtubules present just inside the plasma membrane, implying that microtubules and arabinogalactan proteins interact. In this article, we assess possibilities for how this interaction might be mediated. First, we consider microdomains in the plasma membrane (lipid rafts), which have been alleged to link internal and external …

Ambient Temperature Influences Diet Selection And Physiology Of An Herbivorous Mammal, Neotoma Albigula, M. D. Dearing, Jennifer S. Forbey, J. D. Mclister, L. Santos

Biology Faculty Publications and Presentations

The whitethroat woodrat (Neotoma albigula) eats juniper (Juniperus monosperma), but the amount of juniper in its diet varies seasonally. We tested whether changes in juniper consumption are due to changes in ambient temperature and what the physiological consequences of consuming plant secondary compounds (PSCs) at different ambient temperatures might be. Woodrats were acclimated to either 20ºC or 28ºC. Later, they were given two diets to choose from (50% juniper and a nontoxic control) for 7 d. Food intake, resting metabolic rate (RMR), and body temperature (T_b) were measured over the last 2 d. Woodrats at 28ºC …