Biology Commons^™

Anatomy Of The Recurrent Coastal Sediment Plume In Lake Michigan And Its Impacts On Light Climate, Nutrients, And Plankton, Henry Vanderploeg, Thomas Johengen, Peter J. Lavrentyev, Changsheng Chen, G. A. Lang, M. A. Agy, M. H. Bundy, J. F. Cavaletto, B. J. Eadie, J. R. Liebig, G. S. Miller, S. A. Ruberg, M. J. Mccormick

Peter J. Lavrentyev

As part of the Episodic Events Great Lakes Experiment, we sampled total suspended matter (TSM), light climate, nutrients, and plankton along cross-margin transects in southern Lake Michigan during February, March, and April 1998-2000 to capture conditions before, during, and after the occurrence of storm-driven recurrent coastal sediment plumes to define the anatomy of the resuspension events and get insights into their interactions with nutrients and plankton. Variability in timing and strength of winter storms among years led to different timing, intensity, and extent of plumes among years. TSM concentrations in the core of plumes varied between 15 and 30 mg …

A Modeling Study Of Benthic Detritus Flux's Impacts On Heterotrophic Processes In Lake Michigan, Changsheng Chen, Lixia Wang, Jianhua Qi, Hedong Liu, Judith Wells Budd, David J. Schwab, Dmitry Beletsky, Henry Vanderploeg, Brian Eadie, Thomas Johengen, James Cotner, Peter J. Lavrentyev

Peter J. Lavrentyev

Effects of sediment resuspension-induced benthic detrital flux on the heterotrophic part of the microbial food web in Lake Michigan were examined using a three-dimensional (3-D) coupled biological and physical model. The model was driven by the realistic meteorological forcing observed in March 1999. Wind-induced surface wave dynamics were incorporated into the physical model to generate the bottom flux. The model-generated benthic detrital flux was assumed to be proportional to the difference between model-calculated and critical stresses at the bottom. The model results indicate that detrital flux at the bottom was a key factor causing a significant increase of phosphorus and …

Effects Of The Zebra Mussel On Nitrogen Dynamics And The Microbial Community At The Sediment-Water Interface, Peter J. Lavrentyev, Wayne S. Gardner, Longyuan Yang

Peter J. Lavrentyev

A flow-through experiment was conducted on intact cores of sediments from Saginaw Bay, Lake Huron, to examine how trophic interactions between filter-feeding bivalve mussels and microbial populations could affect nitrogen dynamics at the sediment-water interface. The zebra mussels used in this experiment removed a large proportion of protozoa and phytoplankton from the overlying water, particularly heterotrophic nanoplankton (up to 82%), while bacterial populations showed less change. A 3-fold decrease in the protozoan to bacterial carbon ratio corresponded to a 2.5-fold increase in relative ammonium removal rates as estimated from the dark loss of N-15-ammonium. Excretion by the bivalves also increased …

Distribution And Dynamics Of Nitrogen And Microbial Plankton In Southern Lake Michigan During Spring Transition 1999-2000, Wayne S. Gardner, Peter J. Lavrentyev, Joann F. Cavaletto, Mark J. Mccarthy, B. J. Eadie, Thomas Johengen, James Cotner

Peter J. Lavrentyev

[ 1] Ammonium and amino acid fluxes were examined as indicators of N and microbial food web dynamics in southern Lake Michigan during spring. Either (NH4+)-N-15 or a mixture of N-15-labelled amino acids (both at 4 muM N final concentration) was added to Lake Michigan water. Net fluxes were measured over 24 h under natural light and dark conditions using deck-top incubators and compared to microbial food web characteristics. Isotope dilution experiments showed similar light and dark NH4+ regeneration rates at lake ( 6 versus 5 nM N h(-1)) and river-influenced ( 20 versus 24 nM N h(-1)) sites. Ammonium …

Effects Of Microzooplankton Growth And Trophic Interactions On Herbivory In Coastal And Offshore Environments, Matthew R. First, Harlan L. Miller Iii, Peter J. Lavrentyev, James L. Pinckney, Adrian B. Burd

Peter J. Lavrentyev

We performed serial dilution experiments to estimate rates of gross phytoplankton growth (L) and grazing mortality (m) in both eutrophic (Corpus Christi Bay, Texas, USA) and oligotrophic (offshore Gulf of Mexico) waters. Two parallel experiments were performed in both environments, with seawater pre-screened through 153 or 25 Inn mesh to observe the responses of microzooplankton (MZP) to dilution treatments. MZP biomass changed over the duration of the experimental incubations; in several treatments, MZP net growth rates were >1 d(-1). Patterns of growth varied between dilutions and initial screening size. In the eutrophic system, the ratio of phytoplankton grazing mortality rate …

Grazing And Virus-Induced Mortality Of Microbial Populations Before And During The Onset Of Annual Hypoxia In Lake Erie, Christopher J. Gobler, Timothy W. Davis, Sarah N. Deonarine, Matthew A. Saxton, Peter J. Lavrentyev, Frank J. Jochem

Peter J. Lavrentyev

Lake Erie is the most productive of the North American Great Lakes and experiences annual periods of hypolimnetic hypoxia with unknown consequences for the microbial food web. We established the abundances and mortality rates of microbes in Lake Erie during thermal stratification and determined how they varied with changes in bottom-water dissolved oxygen concentrations. The microbial plankton community (heterotrophic bacteria, Cyanobacteria, eukaryotic phytoplankton, nanozooplankton, microzooplankton) was quantified in surface and bottom waters along with measurements of herbivory and bacterivory rates on eukaryotic and prokaryotic picoplankton and rates of viral lysis of bacteria. High rates of grazing mortality of prokaryotic picoplankton …

Estrogen Receptor-Alpha In The Bed Nucleus Of The Stria Terminalis Regulates Social Affiliation In Male Prairie Voles (Microtus Ochrogaster), Kelly Lei, Bruce S. Cushing, Sergei Musatov, Sonoko Ogawa, Kristin M. Kramer

Bruce S. Cushing

Estrogen receptor alpha (ER alpha) typically masculinizes male behavior, while low levels of ER alpha in the medial amygdala (MeA) and the bed nucleus of the stria terminalis (BST) are associated with high levels of male prosocial behavior. In the males of the highly social prairie vole (Microtus ochrogaster), increasing ER alpha in the MeA inhibited the expression of spontaneous alloparental behavior and produced a preference for novel females. To test for the effects of increased ER alpha in the BST, a viral vector was used to enhance ER alpha expression in the BST of adult male prairie voles. Following …

Estrogen Receptors In The Medial Amygdala Inhibit The Expression Of Male Prosocial Behavior, Bruce S. Cushing, Adam Perry, Sergei Musatov, Sonoko Ogawa

Bruce S. Cushing

Studies using estrogen receptor alpha(ER) knock-out mice indicate that ER alpha masculinizes male behavior. Recent studies of ER alpha and male prosocial behavior have shown an inverse relationship between ER alpha expression in regions of the brain that regulate social behavior, including the medial amygdala (MeA), and the expression of male prosocial behavior. These studies have lead to the hypothesis that low levels of ER alpha are necessary to "permit" the expression of high levels of male prosocial behavior. To test this, viral vectors were used to enhance ER alpha in male prairie voles (Microtus ochrogaster), which display high levels …

The Organizational Effects Of Oxytocin On The Central Expression Of Estrogen Receptor Alpha And Oxytocin In Adulthood, Kristin M. Kramer, Shigeto Yoshida, Eros Papademetriou, Bruce S. Cushing

Bruce S. Cushing

Background: Previous studies have demonstrated that neonatal manipulation of oxytocin (OT) has effects on the expression of estrogen receptor alpha (ER alpha) and the central production of oxytocin observed in juveniles ( at weaning, 21 days of age). The goal of this study was to determine whether the effects of neonatal manipulation of OT last into adulthood, and if the effects differ from those observed during the early postnatal period. On the first day of life, prairie voles ( Microtus ochrogaster) received one of three doses of OT (High, 3 mu g; Med, 0.3 mu g; Low, 0.03 mu g), …

Webs In Vitro And In Vivo: Spiders Alter Their Orb-Web Spinning Behavior In The Laboratory, Andrew Sensenig, Ingi Agnarsson, Taylor M. Gondek, Todd A. Blackledge

Todd A. Blackledge

Many studies of the elegant architectures of orb webs are conducted in controlled laboratory environments that remove environmental variability. The degree to which spider behavior in these circumstances resembles that of spiders in the wild is largely unknown. We compared web architecture and silk investment of furrowed orb weavers Larinioides corium's (Clerck 1757) building webs in laboratory cages and spinning webs on fences in the field and found significant differences. The volume of major ampullate silk in radii was 53% lower in cage webs, primarily because the silk was 50% thinner, but also because spiders tended to spin 14% fewer …

Guided Inquiry Lab Exercises In Development And Oxygen Consumption Using Zebrafish, Brian Bagatto

Brian P. Bagatto

Zebrafish have become a model organism in many areas of research and are now being used with more frequency in the classroom to teach important biological concepts. The two guided inquiry exercises in this article are each aimed at a different level of instruction, but each can be modified to fit the needs of many high school or college-level courses. The "Zebrafish Development and Environment'' exercise teaches high school students about zebrafish development by presenting a series of embryos at different ages. Without access to visual references, students are asked to rank developing zebrafish by age and explain their choices. …

Cadherin2 (N-Cadherin) Plays An Essential Role In Zebrafish Cardiovascular Development, Brian Bagatto, Jessie Francl, Bei Liu, Qin Liu

Brian P. Bagatto

Background: Cadherins are cell surface adhesion molecules that play important roles in development of vertebrate tissues and organs. We studied cadherin2 expression in developing zebrafish heart using in situ hybridization and immunocytochemical methods, and we found that cadherin2 was strongly expressed by the myocardium of the embryonic zebrafish. To gain insight into cadherin2 role in the formation and function of the heart, we analyzed cardiac differentiation and performance in a cadherin2 mutant, glass onion (glo).

A Three-Dimensional Functional Assessment Of Heart And Vessel Development In The Larva Of The Zebrafish (Danio Rerio), Brian Bagatto, Warren Burggren

Brian P. Bagatto

There has been considerable recent interest in the development of the circulation in the zebrafish. Optical techniques typically used to visualize changes in heart size allow measurement of stroke volume during early vertebrate development, but this approach is complicated in zebrafish larvae because of the heart's irregular shape and its significant change in morphology during the first 6 d of development. By use of a three-dimensional integration of the early zebrafish heart and vessels, we have greatly reduced measurement error of stroke volume and cardiac output and have determined the cross-sectional growth of major vessels in the developing zebrafish larvae. …

A New Species Of Pristimantis (Amphibia: Anura) From The Andes Of Northern Peru, Edgar Lehr, David Dickinson, '14

Edgar Lehr

No abstract provided.

A Minute New Species Of Frog (Strabomantidae, Pristimantis) From A Cloud Forest In Southern Peru, Edgar Lehr, Cecilia Boyd, '15

Edgar Lehr

No abstract provided.

Real-Time Pcr And Real-Time Rt-Pcr Applications In Food Labelling And Gene Expression Studies, Arash Kashani, Tasmanian Institute Of Agriculture

Emily Scott

Polymerase chain reaction (PCR) as a scientific invention, has revolutionized molecular biology and led to real-time PCR and later, real-time reverse transcription PCR (Real-Time RT-PCR). These two techniques enable scientists to conduct PCR detection of amplified gene products and expression analysis of targeted genes. Quantitative polymerase chain reaction (qPCR), also called real-time polymerase chain reaction, is a recent modification to PCR that utilizes fluorescent reporter molecular techniques to monitor the production of amplified products during each cycle of the PCR reaction, and enables both detection and quantification of specific sequences in complex mixtures. Over the past decade, real-time PCR applications …

Limited Evidence For Adaptive Evolution And Functional Effect Of Allelic Variation At Rs702424 In The Promoter Of The Tas2r16 Bitter Taste Receptor Gene In Africa, Michael C. Campbell

Michael C. Campbell

Weed Seed Germplasm Collection 1964-2014 Of The Weed Biology Laboratory, Jack Dekker

Jack Dekker

J. Dekker weed seed germplasm collection; including: Lots 1-3974: 1964-2014; main seed library listed by lot numbers. Lots 649-1457: 1989 all-Iowa Setaria transect study. Lots 1762-1812: 1981; Diane Manthey, North Dakota St. Univ., Setaria collection at Bob Anderson's (USDA, Univ. of Minn) 1960's wild oat study sites. Lots 2389-2595: 1992 north temperate world collection (Japan, Russia, Europe) by J. Dekker. Lots 3270-3685: 1993 Brent Reschly transect study of eastern Iowa conventional and Amish farmers. Lots 3786-3962: 2000 J. Dekker 2000 salt-tolerant Setaria of southern Japan collection. All seed in all these collections belong, and were collected and archived by Jack …

Carbon Source-Dependent Alteration Of Puf3p Activity Mediates Rapid Changes In The Stabilities Of Mrnas Involved In Mitochondrial Function, Melanie A. Miller, Joseph Russo, Anthony D. Fischer, Florencia A. Lopez Leban, Wendy M. Olivas

Wendy Olivas

Hits-Clip And Integrative Modeling Define The Rbfox Splicing-Regulatory Network Linked To Brain Development And Autism, Natalie Farny, Sebastien Weyn-Vanhentenryck, Aldo Mele, Qinghong Yan, Shuying Sun, Zuo Zhang, Chenghai Xue, Margaret Herre, Pamela Silver, Michael Zhang, Adrian Krainer, Robert Darnell, Chaolin Zhang

Natalie G. Farny

The RNA binding proteins Rbfox1/2/3 regulate alternative splicing in the nervous system, and disruption of Rbfox1 has been implicated in autism. However, comprehensive identification of functional Rbfox targets has been challenging. Here, we perform HITS-CLIP for all three Rbfox family members in order to globally map, at a single-nucleotide resolution, their in vivo RNA interaction sites in the mouse brain. We find that the two guanines in the Rbfox binding motif UGCAUG are critical for protein-RNA interactions and crosslinking. Using integrative modeling, these interaction sites, combined with additional datasets, define 1,059 direct Rbfox target alternative splicing events. Over half of …

Effects Of Experimentally Elevated Traffic Noise On Nestling White-Crowned Sparrow Stress Physiology, Immune Function And Life History, Ondi L. Crino, Erin E. Johnson, Jessica L. Blickley, Gail L. Patricelli, Creagh W. Breuner

Jessica L Blickley

Roads have been associated with behavioral and physiological changes in wildlife. In birds, roads decrease reproductive success and biodiversity and increase physiological stress. Although the consequences of roads on individuals and communities have been well described, the mechanisms through which roads affect birds remain largely unexplored. Here, we examine one mechanism through which roads could affect birds: traffic noise. We exposed nestling mountain white-crowned sparrows (Zonotrichia leucophrys oriantha) to experimentally elevated traffic noise for 5 days during the nestling period. Following exposure to traffic noise we measured nestling stress physiology, immune function, body size, condition and survival. Based …

Jibin Zhang's Ppt For Midwest Meeting.Pdf, Jibin Zhang, Yeunsu Suh, Young Min Choi, Michael E. Davis, Kichoon Lee

Jibin Zhang

Maine's Kelp Highway, Catherine Schmitt

Catherine Schmitt

No abstract provided.

Mechanisms Of Photoperiod In Regulation Of Rice Flowering, Abdulrahman Mahmoud Dogara, Salisu Muhammad Tahir, Idris Shehu, Mustapha Abbah

Emily Scott

A study on the photoperiodic control of flower in rice is advancing and rice has become an example of short day plant. Many genes used in flowering time determination in rice have been identified by many methods. The conclusion from these molecular studies is a remarkable conservation of genes which play an important role in the control of flowering time in rice. The rice photoperiod sensitivity gene Hd3a was originally detected as a heading date related quantitative trait locus found on chromosome 6 of rice. High resolution linkage mapping of Hd3a was carried using a huge segregating population derived from …

Structural Insights Into The Interaction Between A Potent Anti-Inflammatory Protein, Viral Cc Chemokine Inhibitor (Vcci), And The Human Cc Chemokine, Eotaxin-1, Nai-Wei Kuo, Yong-Guang Gao, Megan S. Schill, Nancy Isern, Cynthia M. Dupureur, Patricia J. Liwang

Cynthia Dupureur

Ontogenetic Variation In Epibiont Community Structure In The Deep-Sea Yeti Crab, Kiwa Hirsuta: Convergence Among Crustaceans, Shana Goffredi, Ann Gregory, William Jones, Norma Morella, Reid Sakamoto

Shana Goffredi

Recent investigations have demonstrated that unusually 'hairy' yeti crabs within the family Kiwaidae associate with two predominant filamentous bacterial families, the Epsilon and Gammaproteobacteria. These analyses, however, were based on samples collected from a single body region, the setae of pereopods. To more thoroughly investigate the microbiome associated with Kiwa puravida, a yeti crab species from Costa Rica, we utilized barcoded 16S rRNA amplicon pyrosequencing, as well as microscopy and terminal restriction fragment length polymorphism analysis. Results indicate that, indeed, the bacterial community on the pereopods is far less diverse than on the rest of the body (Shannon indices ranged …

Effects Of Prey Abundance On Breeding Season Diet Of Northern Goshawks (Accipiter Gentilis) Within An Unusual Prey Landscape, Robert A. Miller, Jay D. Carlisle, Marc J. Bechard

Robert Miller

A critical element of diet analysis is species adaptability to alternative prey sources. The breeding season diet of Northern Goshawks (Accipiter gentilis) includes both mammalian and avian species, varies geographically, and is often dependent upon tree squirrels of the genera Sciurus and Tamiasciurus>/i>. We studied alternative prey sources of Northern Goshawks in the South Hills of south-central Idaho, an area where tree squirrels are naturally absent and other prey frequently important in the diet of goshawks, such as smaller corvids, are uncommon. We quantified the diet of goshawks using nest cameras and surveyed abundance of prey using line …

Lichens Of Six Vernal Pools In Acadia National Park, Maine, Usa, Jason Barton, Brett Ciccotelli, Jillian E. Gall, Fred C. Olday, Bruce Connery, Tanner B. Harris, Alan M. Fryday, Nishanta Rajakaruna

Nishanta Rajakaruna

Whereas lichen-habitat relations have been well-documented globally, literature on lichens of vernal pools is scant. We surveyed six vernal pools at Acadia National Park on Mount Desert Island, Maine, USA for their lichen diversity. Sixty-seven species were identified, including seven species that are new reports for Acadia National Park: Fuscidea arboricola, Hypogymnia incurvoides, Lepraria finkii, Phaeographis inusta, Ropalospora viridis, Usnea flammea, and Violella fucata. Five species are considered uncommon or only locally common in New England: Everniastrum catawbiense, Hypogymnia krogiae, Pseudevernia cladonia, Usnea flammea, and Usnea merrillii. This …

Genetic Origins Of Lactase Persistence And The Spread Of Pastoralism In Africa, Michael C. Campbell

Michael C. Campbell

Moistened Seeds Increase Rodent Trap Success, Michael Sears, John Tull

Michael W. Sears

Seed moisture has been shown to influence the rates of seed cache removal by rodents. Although the precise mechanism is not known, this knowledge might prove useful in field applications. We examined whether moistened bait would increase trap success in desert rodent populations. We placed traps 15 m apart in grids within a 500-ha study area and randomly baited traps with either dry or moistened seeds. We found that traps baited with moistened seeds had 34.9% higher success than traps baited with dry seeds (n = 190, Χ2 = 5.389, df = 1, P = 0.020). Our results suggest that …