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Articles 1 - 30 of 57
Full-Text Articles in Biology
Comparative Genomic Study Of Lactobacillus Jensenii And The Newly Defined Lactobacillus Mulieris Species Identifies Species-Specific Functionality, Catherine Putonti, Jason W. Shapiro, Adriana Ene, Oleksandra Tsibere, Alan J. Wolfe
Comparative Genomic Study Of Lactobacillus Jensenii And The Newly Defined Lactobacillus Mulieris Species Identifies Species-Specific Functionality, Catherine Putonti, Jason W. Shapiro, Adriana Ene, Oleksandra Tsibere, Alan J. Wolfe
Bioinformatics Faculty Publications
Lactobacilli are dominant members of the “healthy” female urogenital microbiota. One of these species, Lactobacillus jensenii, is routinely identified in the urinary microbiota of women both with and without urinary tract symptoms. In March 2020, the new bacterial species Lactobacillus mulieris was introduced, and phylogenetic and average nucleotide identity analysis identified eight L. jensenii strains that should be classified as members of the L. mulieris species. This prompted our phylogenomic study of all publicly available L. jensenii and L. mulieris genome sequences. While there is little variation in the 16S rRNA gene sequences, the core genome shows a clear distinction …
Introducing Lu-1, A Novel Lactobacillus Jensenii Phage Abundant In The Urogenital Tract, Taylor Miller-Ensminger, Rita Mormando, Laura Maskeri, Jason W. Shapiro, Alan J. Wolfe, Catherine Putonti
Introducing Lu-1, A Novel Lactobacillus Jensenii Phage Abundant In The Urogenital Tract, Taylor Miller-Ensminger, Rita Mormando, Laura Maskeri, Jason W. Shapiro, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Bacteriophages (phages) play a key role in shaping microbial communities, including those of the human body. Phages are abundant members of the urogenital tract, most often persisting through the lysogenic life cycle as prophages integrated within the genomes of their bacterial hosts. While numerous studies of the urogenital microbiota have focused on the most abundant bacterial member of this niche–Lactobacillus species–very little is known about Lactobacillus phages. Focusing on Lactobacillus jensenii strains from the urinary tract, we identified numerous prophages related to the previously characterized Lv-1 phage from a vaginal L. jensenii strain. Furthermore, we identified a new L. jensenii …
Draft Genome Sequence Of Actinomyces Neuii Umb1295, Isolated From The Female Urinary Tract, Tijana Markovic, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Actinomyces Neuii Umb1295, Isolated From The Female Urinary Tract, Tijana Markovic, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Actinomyces neuii is an opportunistic pathogen. Within the urogenital tract, it has been associated with bacterial vaginosis and overactive bladder symptoms. Here, we investigate a draft genome sequence of A. neuii UMB1295, which was isolated from a catheterized urine sample from a woman with a urinary tract infection.
Draft Genome Sequence Of Lactobacillus Crispatus Umb1163, Isolated From The Female Urinary Tract, Fabeiha Khan, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Lactobacillus Crispatus Umb1163, Isolated From The Female Urinary Tract, Fabeiha Khan, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Lactobacillus crispatus is a Gram-positive bacterium shown to protect against urinary and vaginal infections. Here, we report the draft genome sequence of L. crispatus UMB1163, isolated from the female urinary tract.
Draft Genome Sequence Of Escherichia Coli Umb9246, Isolated From The Bladder Of A Woman With Recurrent Urinary Tract Infection, Mikalina Belmonte, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Escherichia Coli Umb9246, Isolated From The Bladder Of A Woman With Recurrent Urinary Tract Infection, Mikalina Belmonte, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Escherichia coli is a Gram-negative, motile, rod-shaped bacterium that causes the majority of uncomplicated urinary tract infections (UTIs). Here, we report the draft genome of E. coli strain UMB9246, an isolate from a woman with recurrent UTI.
Draft Genome Sequence Of Streptococcus Anginosus Umb0839, Isolated From The Female Urinary Tract, Thomas Scott, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Streptococcus Anginosus Umb0839, Isolated From The Female Urinary Tract, Thomas Scott, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Here, we present the draft genome sequence of Streptococcus anginosus UMB0839, isolated from the female urinary tract. The total size of the genome is 2,104,786 bp assembled into 42 contigs with a GC content of 38.8% and 284× genome coverage.
Draft Genome Sequence Of Escherichia Coli Umb1353, Isolated From The Female Urinary Tract, Tanea Crawford, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Escherichia Coli Umb1353, Isolated From The Female Urinary Tract, Tanea Crawford, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Here, we present the draft genome sequence of Escherichia coli UMB1353, isolated from a patient with a urinary tract infection. The sequence of this antibiotic-resistant E. coli strain contains one intact P2-like phage.
Draft Genome Sequence Of Corynebacterium Aurimucosum Umb7769, Isolated From The Female Urinary Tract, Samantha Eskandar, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Corynebacterium Aurimucosum Umb7769, Isolated From The Female Urinary Tract, Samantha Eskandar, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Here, we present the draft genome sequence of Corynebacterium aurimucosum UMB7769, isolated from the female urinary tract. The size of the genome is 2,731,818 bp, assembled in 50 contigs, with an observed GC content of 60.9% and an N50 score of 129,518 bp. Annotation revealed 31 antibiotic resistance genes.
Draft Genome Sequence Of Enterococcus Faecalis Umb1309, Isolated From Catheterized Urine, Adam Schwartz, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Enterococcus Faecalis Umb1309, Isolated From Catheterized Urine, Adam Schwartz, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
A strain of Enterococcus faecalis was isolated from catheterized urine. Here, we present the draft genome sequence of this isolate, E. faecalis UMB1309. Analysis of the genome revealed multiple genes coding for virulence factors, as well as genes associated with antibiotic resistance.
Draft Genome Sequence Of Enterococcus Faecalis Umb7780, Isolated From The Female Urinary Tract, Martin Kalski, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Enterococcus Faecalis Umb7780, Isolated From The Female Urinary Tract, Martin Kalski, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Here, we present the draft genome sequence of Enterococcus faecalis UMB7780, isolated from the female urinary tract. The genome size is 3,005,901 bp, with a GC content of 37.36%, genome coverage of 179×, and an N50 score of 169,627 bp. Genome analysis identified evidence of antibiotic resistance, as well as intact prophages.
Draft Genome Sequence Of Streptococcus Anginosus Umb7768, Isolated From A Woman With Recurrent Uti Symptoms, Sarah Miller, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Streptococcus Anginosus Umb7768, Isolated From A Woman With Recurrent Uti Symptoms, Sarah Miller, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Streptococcus anginosus recently was implicated as a pathogen involved in urinary tract infections. A strain of S. anginosus was isolated from the female urogenital tract. Here, we present the draft genome sequence of S. anginosus strain UMB7768.
Draft Genome Sequence Of Proteus Mirabilis Strain Umb0038, Isolated From The Female Bladder, Noreen Gallian, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Proteus Mirabilis Strain Umb0038, Isolated From The Female Bladder, Noreen Gallian, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Proteus mirabilis is a Gram-negative motile and rod-shaped bacterium that is a common pathogen of the urinary tract. Here, we report the draft genome sequence of P. mirabilis UMB0038, which was isolated from a woman without lower urinary tract symptoms.
Draft Genome Sequence Of Lactobacillus Jensenii Umb0836, Isolated From The Female Bladder, Isaac Rivera, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Lactobacillus Jensenii Umb0836, Isolated From The Female Bladder, Isaac Rivera, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Lactobacillus jensenii is a frequent member of both the vaginal and urinary microbiota. Here, we present the draft genome sequence for L. jensenii UMB0836, isolated from catheterized urine obtained from a pregnant female. The genome is 1,648,234 bp long, assembled in 40 contigs.
Draft Genome Sequences Of Three Enterococcus Casseliflavus Strains Isolated From The Urine Of Healthy Bovine Heifers (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, Catherine Putonti
Draft Genome Sequences Of Three Enterococcus Casseliflavus Strains Isolated From The Urine Of Healthy Bovine Heifers (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, Catherine Putonti
Bioinformatics Faculty Publications
Enterococcus casseliflavus is a commensal bacterium present in the intestinal microbiota of different animals. Previous studies have found that strains isolated from livestock are often resistant to many different antibiotics. Here, we present three E. casseliflavus strains, UFMG-H7, UFMG-H8, and UFMG-H9, isolated from urine collected from healthy dairy heifers in Brazil.
Three Draft Genome Sequences Of Staphylococcus Species Isolated From The Urine Of Healthy Bovine Heifers (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, Catherine Putonti
Three Draft Genome Sequences Of Staphylococcus Species Isolated From The Urine Of Healthy Bovine Heifers (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, Catherine Putonti
Bioinformatics Faculty Publications
Members of the Staphylococcus genus are known pathogens causing mastitis in dairy cows, which results in major economic losses. Here, we present Staphylococcus epidermidis UFMG-H7, Staphylococcus hominis UFMG-H7B, and Staphylococcus sciuri UFMG-H6, isolated from the urine of healthy purebred Gyr heifers.
Draft Genome Sequence Of Lactobacillus Mulieris Umb7784, Isolated From The Female Urinary Tract, Oleksandra Tsibere, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Lactobacillus Mulieris Umb7784, Isolated From The Female Urinary Tract, Oleksandra Tsibere, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
We sequenced the genome of Lactobacillus mulieris UMB7784, isolated from the urinary tract. With a genome size of 1,695,489 bp and a GC content of 34.2%, the draft genome sequence presented here expands our understanding of lactobacilli in the female bladder.
Draft Genome Sequence Of Enterobacter Asburiae Ufmg-H9, Isolated From Urine From A Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Enterobacter Asburiae Ufmg-H9, Isolated From Urine From A Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Enterobacter asburiae is part of the Enterobacter cloacae complex, related to nosocomial opportunistic infections in humans. Here, we report the draft genome of E. asburiae strain UFMG-H9, an isolate from urine from a healthy Gyr heifer.
Draft Genome Sequence Of Streptococcus Anginosus Umb1296, Isolated From The Female Urinary Tract, Sara Temelkova, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Streptococcus Anginosus Umb1296, Isolated From The Female Urinary Tract, Sara Temelkova, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
We present the draft genome sequence of a Streptococcus anginosus strain isolated from the female urinary tract. The S. anginosus UMB1296 draft genome has a size of 1,924,009 bp assembled into 35 contigs with a GC content of 38.69%. Genome annotation revealed 1,775 protein-coding genes, including several known virulence factors.
Draft Genome Sequence Of Proteus Mirabilis Umb1310, Isolated From The Female Urinary Tract, Olivia Allen, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Proteus Mirabilis Umb1310, Isolated From The Female Urinary Tract, Olivia Allen, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Proteus mirabilis is a Gram-negative bacterium that is linked to common complications within the urinary tract. Here, we present the draft genome for P. mirabilis UMB1310, which was isolated from the urine of a woman with a urinary tract infection.
Draft Genome Sequence Of Klebsiella Pneumoniae Umb7779, Isolated From The Female Urinary Tract, Pavan Bhimalli, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Klebsiella Pneumoniae Umb7779, Isolated From The Female Urinary Tract, Pavan Bhimalli, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Klebsiella pneumoniae is a pathogenic bacterium commonly responsible for urinary tract infections (UTIs). Here, we report the draft genome sequence of K. pneumoniae strain UMB7779, isolated from catheterized urine of a woman with a recurrent UTI.
Draft Genome Sequence Of Corynebacterium Coyleae Umb8490, Isolated From The Female Urinary Tract, Abbas Ali Khan, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Corynebacterium Coyleae Umb8490, Isolated From The Female Urinary Tract, Abbas Ali Khan, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Here, we present the draft genome sequence for Corynebacterium coyleae UMB8490, isolated from the catheterized urine of a female with overactive bladder symptoms. The size of the genome is 2,483,223 bp assembled in 62 contigs with an observed GC content of 61.42%.
Draft Genome Sequence Of Antibiotic-Resistant Enterococcus Faecalis Strain Umb0843, Isolated From The Female Urinary Tract, Natalia Purta, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Antibiotic-Resistant Enterococcus Faecalis Strain Umb0843, Isolated From The Female Urinary Tract, Natalia Purta, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Here, we introduce the 2.8-Mbp draft genome of Enterococcus faecalis strain UMB0843, isolated from the female urinary tract. E. faecalis is a leading cause of nosocomial infections, and many strains are often resistant to multiple antibiotics. We focus our genome analysis on the multiple genes involved in antibiotic resistance in this strain.
Draft Genome Sequence Of Lactobacillus Jensenii Strain Umb7766, Isolated From The Female Bladder, Taylor Miller-Ensminger, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Lactobacillus Jensenii Strain Umb7766, Isolated From The Female Bladder, Taylor Miller-Ensminger, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Lactobacillus jensenii is a beneficial and prominent community member within both the vaginal and female urinary microbiota. As more genomes for L. jensenii strains are made publicly available, we gain more knowledge about this beneficial community member. Here, we present the draft genome sequence of L. jensenii UMB7766, which was isolated from a urine specimen from a catheterized female patient with recurrent urinary tract infections.
Draft Genome Sequence Of Lactobacillus Jensenii Umb0847, Isolated From The Female Urinary Tract, Ella West-Pelak, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Lactobacillus Jensenii Umb0847, Isolated From The Female Urinary Tract, Ella West-Pelak, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Lactobacillus jensenii is a protective bacterium native to the female urinary tract. Here, we present the 1.6-Mbp draft genome for Lactobacillus jensenii UMB0847, isolated from a catheterized urine sample obtained from a pregnant female.
Draft Genome Sequence Of Lactobacillus Mulieris Umb9245, Isolated From The Female Bladder, Lidia Ramotowski, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Lactobacillus Mulieris Umb9245, Isolated From The Female Bladder, Lidia Ramotowski, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Lactobacillus jensenii is an anaerobic bacterium found in the urogenital tract that is known to prevent common vaginal infections. Recently, it was divided into two species, L. jensenii and L. mulieris. Here, we report the draft genome sequence of L. mulieris UMB9245, with a genome length of 1,723,383 bp assembled into 52 contigs.
Draft Genome Sequence Of Klebsiella Pneumoniae Umb8492, Isolated From The Female Urinary Tract, Suma Gondi, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Klebsiella Pneumoniae Umb8492, Isolated From The Female Urinary Tract, Suma Gondi, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Here, we present the draft genome sequence for Klebsiella pneumoniae strain UMB8492, isolated from a urine sample from a female patient with overactive bladder (OAB) symptoms. The assembled genome has a length of 5,660,575 bp, a G+C content of 57.19%, and an N50 value of 136,315 bp.
Draft Genome Sequence Of Staphylococcus Epidermidis Umb7765, Isolated From The Urobiome Of A Woman With Recurrent Urinary Tract Infection, Lucy Kemper, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Draft Genome Sequence Of Staphylococcus Epidermidis Umb7765, Isolated From The Urobiome Of A Woman With Recurrent Urinary Tract Infection, Lucy Kemper, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, Catherine Putonti
Bioinformatics Faculty Publications
Staphylococcus epidermidis is a Gram-positive bacterium that is resistant to many antibiotics. Here, we present the 2.5-Mb draft genome of S. epidermidis UMB7765, isolated from a voided urine sample from a female with recurrent urinary tract infections.
Draft Genome Sequence Of Aeromonas Caviae Ufmg-H8, Isolated From Urine From A Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, Catherine Putonti
Draft Genome Sequence Of Aeromonas Caviae Ufmg-H8, Isolated From Urine From A Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, Catherine Putonti
Bioinformatics Faculty Publications
Aeromonas caviae is an emerging pathogen in humans, causing intestinal infections. Here, we report Aeromonas caviae strain UFMG-H8, isolated from the urine of a healthy heifer (Gyr breed).
Draft Genome Sequence Of Citrobacter Freundii Ufmg-H9, Isolated From Urine From A Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, Catherine Putonti
Draft Genome Sequence Of Citrobacter Freundii Ufmg-H9, Isolated From Urine From A Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, Catherine Putonti
Bioinformatics Faculty Publications
Citrobacter freundii is a pathogen associated with antibiotic resistance and severe infections in humans. Here, we report the draft genome sequence of C. freundii strain UFMG-H9, an isolate from urine from a healthy Gyr heifer.
Complete Genome Sequences Of Streptococcus Mitis Strains Isolated From The Oral Cavity And Urogenital Tract Of A Woman And Her Male Sexual Partner, Carine R. Mores, Travis K. Price, Bridget Brassil, Catherine Putonti, Alan J. Wolfe
Complete Genome Sequences Of Streptococcus Mitis Strains Isolated From The Oral Cavity And Urogenital Tract Of A Woman And Her Male Sexual Partner, Carine R. Mores, Travis K. Price, Bridget Brassil, Catherine Putonti, Alan J. Wolfe
Bioinformatics Faculty Publications
Streptococcus mitis is a member of the mitis group of the genus Streptococcus, which includes commensal species of the oral cavity and upper respiratory tract. Here, we report 39 complete genome sequences of S. mitis strains isolated from the oral cavity and urogenital tract of a woman and her male sexual partner.