Biodiversity Commons^™

Ancyronyx Jhoanae Sp. Nov. (Coleoptera: Elmidae), A New Spider Riffle Beetle Species From Luzon, Philippines, And New Records For A. Tamaraw Freitag, 2013, Christalle Beatriz N. Seno, Hendrik Freitag

Biology Faculty Publications

Ancyronyx jhoanae sp. nov., a new species of genus Ancyronyx Erichson, 1847 from Luzon is described using an integrative taxonomic approach. Illustrations of habitus and diagnostic characters are provided. Molecular analysis of a fragment of the COI 5’-end was employed to support the morphological species concept. Differences from closely related species based on molecular and morphological data are discussed. First records of A. tamaraw Freitag, 2013 from Luzon are reported.

Two New Species Of Anacaena Thomson, 1859 (Coleoptera, Hydrophilidae) From Northern Luzon, Philippines, Enrico Gerard S. Sanchez, Emmanuel D. Delocado, Hendrik Freitag

Biology Faculty Publications

Two species of Anacaena Thomson, 1859, A. angatbuhay sp. nov. and A. auxilium sp. nov., are described from Northern Luzon, Philippines. The new species can be distinguished through colour, body shape, surface puncturation and characteristic aedeagi. Descriptions are provided and complemented with habitus photographs and drawings of the aedeagi. Data on genus distribution in the Philippines are reviewed and an updated Philippine checklist is provided.

A Global Agenda For Advancing Freshwater Biodiversity Research, Alain Maasri, Sonja C. Jähnig, Hendrik Freitag, 93 Co-Authors

Biology Faculty Publications

Global freshwater biodiversity is declining dramatically, and meeting the challenges of this crisis requires bold goals and the mobilisation of substantial resources. While the reasons are varied, investments in both research and conservation of freshwater biodiversity lag far behind those in the terrestrial and marine realms. Inspired by a global consultation, we identify 15 pressing priority needs, grouped into five research areas, in an effort to support informed stewardship of freshwater biodiversity. The proposed agenda aims to advance freshwater biodiversity research globally as a critical step in improving coordinated actions towards its sustainable management and conservation.

Two New Species Of Byrrhinus Motschulsky, 1858 (Coleoptera, Limnichidae, Limnichinae) From Negros, Philippines, Emmanuel D. Delocado, Hendrik Freitag

Biology Faculty Publications

Two new species of Limnichidae beetles, Byrrhinus negrosensis sp. nov. and Byrrhinus villarini sp. nov., are described from the Island of Negros in the Philippines. The adult specimens of the new species can be differentiated by patterns of body punctation, colour and orientation of elytral pubescence, posterolateral angle of pronotum, tarsomere length ratio and aedeagal form. Two clades, representing the two new species, were retrieved in the Maximum Likelihood gene tree using the 3’-end of the COI gene. Maximum genetic divergence within B. negrosensis sp. nov. and B. villarini sp. nov. were recorded to be 2.3% and 1.3%, respectively, while …

Developing Inside A Layer Of Germs—A Potential Role For Multiciliated Surface Cells In Vertebrate Embryos, Ryan R. Kerney

Biology Faculty Publications

This paper reviews current research on the microbial life that surrounds vertebrate embryos. Several clades are believed to develop inside sterile—or near-sterile—embryonic microhabitats, while others thrive within a veritable zoo of microbial life. The occurrence of embryo-associated microbes in some groups, but not others, is an under-appreciated transition (possibly transitions) in vertebrate evolution. A lack of comparable studies makes it currently impossible to correlate embryo-associated microbiomes with other aspects of vertebrate evolution. However, there are embryonic features that should instruct a more targeted survey. This paper concludes with a hypothesis for the role of multiciliated surface cells in amphibian and …

The Big Picture: Consolidating National Government And Cites Records Of Animal Trade In The Philippines From 1975 To 2019, Ronald Allan L. Cruz, Catherine Genevieve B. Lagunzad

Biology Faculty Publications

The Philippines has exceptionally high biodiversity but is also a hotspot. It is a recognized source; destination; and transit point for the global wildlife trade; which drives biodiversity loss. There is an abundance of data from the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) on the Philippines; but this data has not been assessed for historical trends. Confiscation data reflecting the illegal trade is scarcer; coming from recent (2008 onward) records of the Department of Environment and Natural Resources ___ Biodiversity Management Bureau (DENR-BMB) and the Palawan Council for Sustainable Development (PCSD). CITES data …

Rapid Survey Of Anuran Species In Baguio-Benguet Area And Isolation Of Their Fungal Symbionts, Arthien Lovell P. Pelingen, Camille Andrea Flores, Axel John Briz, Roland Hipol, Celia Austria

Biology Faculty Publications

Baguio City is one of the fastest-growing centers of urbanization in the Philippines. As part of the Cordillera Mountain Range, it is a biodiversity hotspot that is largely unexplored. This study is a preliminary investigation using visual encounter surveys of anuran species in various localities of the Baguio-Benguet area (BBA). These include Loakan Airport (LA), Camp John Hay (CJH), and Soroptimist Compound (SC) at the Military Cut Off, all in Baguio; Nangalisan, Tuba (NT), Benguet; and Master’s Garden (MG) at Puguis, La Trinidad, Benguet. We documented three Luzon-endemic species of frogs – namely, Kaloula rigida (Family Microhylidae), Sanguirana luzonensis (Family …

Aquatic Coleoptera Of Northern Negros, Philippines, Marc Ryan Sabordo, Carl Michael Buyco, Gwendalyn Henares, Jessica Pacalioga, Hendrik Freitag

Biology Faculty Publications

The water beetle fauna of northern Negros Island has not been comprehensively studied. In this study, aquatic Coleoptera of northern Negros have been compiled from various collections. Specimens were sampled through manual sampling and light trap. Twenty-six (26) species were recorded including 21 which are Philippine endemics. Nine genera and three known species are recorded for the first time from Negros. Notes on distribution, ecology and identification are provided. Possible new species, future potential discoveries as well as current significance in terms of conservation are discussed.

Contributions To The Knowledge Of Water Bugs In Mindoro Island, Philippines, With A Species Checklist Of Nepomorpha And Gerromorpha (Insecta, Hemiptera, Heteroptera), Arthien Lovell Pelingen, Herbert Zettel, Clister V. Pangantihon, Kyra Mari Dominique Aldaba, Earl Kevin Fatallo, Jemillie Madonna De Leon, Hendrik Freitag

Biology Faculty Publications

This survey aims to provide an updated species checklist of aquatic and semi-aquatic bugs in the intra-Philippine biogeographic Region of Mindoro. An assessment survey of water bugs (Hemiptera, Heteroptera) was conducted mostly by manual collection in selected areas of Oriental Mindoro from 2017 to 2018, in which some of the collecting activities were undertaken by graduate students of Ateneo de Manila University. Twenty-nine aquatic and semi-aquatic heteropteran species were documented and some are known island-endemic species or subspecies, including Enithares martini mindoroensis Nieser & Zettel, 1999, Hydrotrephes stereoides mindoroensis Zettel, 2003, Aphelocheirus freitagi Zettel & Pangantihon, 2010, Rhagovelia mindoroensis Zettel, …

Taxonomic Revision Of Agraphydrus Régimbart , 1903 V. Philippine Species And Their First Dna Barcodes (Coleoptera: Hydrophilidae: Acidocerinae), Hendrik Freitag, Albrecht Komarek

Biology Faculty Publications

The genus Agraphydrus RÉGIMBART , 1903 (Coleoptera: Hydrophilidae) of the Republic of the Philippines is taxonomically reviewed aided by COI mtDNA barcodes. Nine new species are described, all currently regarded as endemic to the Philippines: A. abrasus sp.n., A. ampullatus sp.n., A. batak sp.n., A. brevilobatus sp.n., A. occultus sp.n., A. palawanensis sp.n., A. pelingeni sp.n., A. tenuipalpis sp.n., and A. zetteli sp.n. Agraphydrus coomani (O RCHYMONT , 1927), widespread in the Oriental and Australasian regions, is recorded from the Philippines for the first time. COI sequences and thorough morphological examination suggest that this and further species represent a group …

Heterotrophic Carbon Fixation In A Salamander-Alga Symbiosis, John A. Burns, Ryan Kerney, Solange Duhamel

Biology Faculty Publications

The unique symbiosis between a vertebrate salamander, Ambystoma maculatum, and unicellular green alga, Oophila amblystomatis, involves multiple modes of interaction. These include an ectosymbiotic interaction where the alga colonizes the egg capsule, and an intracellular interaction where the alga enters tissues and cells of the salamander. One common interaction in mutualist photosymbioses is the transfer of photosynthate from the algal symbiont to the host animal. In the A. maculatum–O. amblystomatis interaction, there is conflicting evidence regarding whether the algae in the egg capsule transfer chemical energy captured during photosynthesis to the developing salamander embryo. In experiments …

In Memoriam: Ignacio Ribera (1963–2020), Emmanuel D. Delocado, Michael Balke, Hendrik Freitag

Biology Faculty Publications

No abstract provided.

Multiple Connections Between Amazonia And Atlantic Forest Shaped The T Phylogenetic And Morphological Diversity Of Chiasmocleis Mehely, 1904 (Anura: Microhylidae: Gastrophryninae), Rafael O. De Sá, João Filipe Riva Tonini, Hannah Van Huss, Alex Long, Travis Cuddy, Mauricio C. Forlani, Pedro L.V. Peloso, Hussam Zaher, Célio F.B. Haddad

Biology Faculty Publications

Chiasmocleis is the most species-rich genus of Neotropical microhylids. Herein, we provide the first comprehensive multilocus phylogeny for the genus, including all but 3 of the 34 recognized species and multiple individuals per species. We discuss cryptic speciation, species discovery, patterns of morphological evolution, and provide a historical biogeographic analysis to account for the current distribution of the genus. Diversification of Chiasmocleis from other New World microhylids began during the Eocene, app. 40 mya, in forested areas, and current diversity seems to be a product of recurrent connections between the Atlantic Forest and Amazonia. Small-sized species evolved independently three times …

A Rapid And Accurate Minion-Based Workflow For Tracking Species Biodiversity In The Field, Hendrik Freitag, Simone Maestri, Emanuela Cosentino, Marta Paterno, Jhoana M. Garces, Luca Marcolungo, Massimiliano Alfano, Iva Njunjić, Menno Schilthuizen, Ferry Slik, Michele Menegon, Marzia Rossato, Massimo Delledonne

Biology Faculty Publications

Genetic markers (DNA barcodes) are often used to support and confirm species identification. Barcode sequences can be generated in the field using portable systems based on the Oxford Nanopore Technologies (ONT) MinION sequencer. However, to achieve a broader application, current proof-of-principle workflows for on-site barcoding analysis must be standardized to ensure a reliable and robust performance under suboptimal field conditions without increasing costs. Here, we demonstrate the implementation of a new on-site workflow for DNA extraction, PCR-based barcoding, and the generation of consensus sequences. The portable laboratory features inexpensive instruments that can be carried as hand luggage and uses standard …

Reducing Protected Lands In A Hotspot Of Bee Biodiversity: Bees Of Grand Staircase-Escalante National Monument, Joseph S. Wilson, Matt Kelly, Olivia Messinger Carril

Biology Faculty Publications

Grand Staircase-Escalante National Monument is a federally protected area found in central southern Utah. Designated in 1996 by President William J. Clinton, it was recently reduced in size by President Donald J. Trump in a proclamation that turned the one large monument into three smaller ones. A long-term, standardized study of the bees had been conducted from 2000–2003, revealing 660 species. The bee communities of the area are characterized by being spatially heterogeneous; most of the bees occur in isolated areas, with only a few being both abundant and widespread. Here we examine what affect the recent resizing of the …

Multiple Facets Of Biodiversity Drive The Diversity-Stability Relationship, Dylan Craven, Nico Eisenhauer, William D. Pearse, Yann Hautier, Christiane Roscher, Forest Isbell, Michael Bahn, Carl Beierkuhnlein, Gerhard Bönisch, Nina Buchmann, Chaeho Byun, Jane A. Catford, Bruno E.L. Cerabolini, J. Hans C. Cornelissen, Joseph M. Craine, Enrica De Luca, Anne Ebeling, John N. Griffin, Andy Hector, Jes Hines, Anke Jentsch, Jens Kattge, Jürgen Kreyling, Vojtech Lanta, Nathan Lemoine, Sebastian T. Meyer, Vanessa Minden, Vladimir Onipchenko, H. Wayne Polley, Peter B. Reich, Jasper Van Ruijven, Brandon Schamp, Melinda D. Smith, Nadejda A. Soudzilovskaia, David Tilman, Alexandra Weigelt, Brian Wilsey, Peter Manning

Biology Faculty Publications

A significant body of evidence has demonstrated that biodiversity stabilizes ecosystem functioning over time in grassland ecosystems. However, the relative importance of different facets of biodiversity underlying the diversity–stability relationship remains unclear. Here we used data from 39 biodiversity experiments and structural equation modeling to investigate the roles of species richness, phylogenetic diversity, and both the diversity and community-weighted mean of functional traits representing the ‘fast–slow’ leaf economics spectrum in driving the diversity–stability relationship. We found that high species richness and phylogenetic diversity stabilize biomass production via enhanced asynchrony. Contrary to our hypothesis, low phylogenetic diversity also enhances ecosystem stability …

Prioritizing Phylogenetic Diversity Captures Functional Diversity Unreliably, Florent Mazel, Matthew W. Pennell, Marc W. Cadotte, Sandra Diaz, Giulio Valentino Dalla Riva, Richard Grenyer, Fabien Leprieur, Arne O. Mooers, David Mouillot, Caroline M. Tucker, William D. Pearse

Biology Faculty Publications

In the face of the biodiversity crisis, it is argued that we should prioritize species in order to capture high functional diversity (FD). Because species traits often reflect shared evolutionary history, many researchers have assumed that maximizing phylogenetic diversity (PD) should indirectly capture FD, a hypothesis that we name the “phylogenetic gambit”. Here, we empirically test this gambit using data on ecologically relevant traits from >15,000 vertebrate species. Specifically, we estimate a measure of surrogacy of PD for FD. We find that maximizing PD results in an average gain of 18% of FD relative to random choice. However, this average …

Aquatic Polyphaga (Insecta: Coleoptera) From Kampong Speu Province, Cambodia, Hendrik Freitag, Bros Doeurk, Soksan Chhorn, Chandara Khin, Sopha Sin, Sarah Ehlers, Jody Voges, Jhoana Garces, Sophany Phauk

Biology Faculty Publications

We present the results of a faunistic inventory undertaken on aquatic Polyphaga beetles as part of a workshop organised by the BIO-PHIL project in Cambodia. Three small rivers and a pond in Kampong Speu Province were sampled in July 2018. Twenty-one taxa were collected during the sampling and identifi ed to species or morphospecies level. These are described with comments on habitat, distribution and further remarks, where applicable. A checklist of the genera and species of aquatic Dryopidae, Elmidae, Hydraenidae, Hydrophilidae, Psephenidae and Spercheidae of Cambodia is presented which includes new records for the country

Three New Species Of Grouvellinus Champion, 1923 From Maliau Basin, Sabah, Borneo, Discovered By Citizen Scientists During The First Taxon Expedition (Insecta, Coleoptera, Elmidae), Hendrik Freitag, Iva Njunjic, Clister V. Pangantihon

Biology Faculty Publications

Further results are presented of the first field course at Maliau Basin, Malaysian Borneo organized by Taxon Expeditions, an organization which enables citizen scientists to be directly involved in taxonomic discoveries. Three new species of the aquatic beetle genus Grouvellinus Champion, 1923, namely G. leonardodicaprioi sp. n., G. andrekuipersi sp. n., and G. quest sp. n. were collected jointly by the citizen scientists and taxonomists during the fieldwork in Maliau Basin. Material was mainly sampled from sandstone bottom rocks of blackwater streams at altitudes between 900 m and 1,000 m using fine-meshed hand-nets. The genus is widely distributed …

Sparsorythus Sescarorum, New Species From Mindoro, Philippines (Ephemeroptera, Tricorythidae), Jhoana Garces, Ernst Bauernfeind, Hendrik Freitag

Biology Faculty Publications

A new mayfly species, Sparsorythus sescarorum sp. n. (Tricorythidae) is described from Mindoro Island, Philippines. Nymphs are characterized by the combination of the following characters: compound eyes of approximately equal size in both sexes, shape and setation of legs, presence of rudimentary gills on abdominal segment VII, and some details of mouthparts. Male imagines are characterized by the coloration pattern of wings and details of genitalia. The developmental stages are matched by DNA barcodes.

A Global Community Effort To Decipher The Unique Biology Of Annual Killifish, Nibia Berois, Graciela Garcia, Rafael O. De Sá

Biology Faculty Publications

Over the past 50 years, annual killifishes arose as alternative model organisms for studies of vertebrate biology. The annual fish offers exceptional advantages for studies of genetics, genomics, developmental biology, population dynamics, ecology, biogeography, and evolution. They inhabit extremely variable freshwater environments in Africa and South America, have a short lifespan and a set of unique and fascinating developmental characteristics. Embryos survive within the dry substrate during the dry season, whereas the adult population dies. Thus, the survival of the populations is entirely dependent on the buried embryos that hatch the next rainy season. Although Old and New World species …

Identification And Characterization Of Endophytic Fungi Associated With The Leaves Of Moringa Oleifera Lam, Vivian A. Panes, E.S Carbungco, N.B Pedroche, T.E De La Cruz

Biology Faculty Publications

Fungal endophytes live within host plants and are recently gaining interest as sources of biologically active secondary metabolites. In this research, fungal endophytes associated with leaves of Moringa oleifera Lam. were isolated, characterized and identified. Leaf samples from two moringa trees were collected from Barangay Pandan, which is an urban area and Barangay Sapang Bato considered as a rural area with the highest elevation of all the barangays of Angeles City. All leaf samples were rid of debris by rinsing with tap water. A flame-sterilized one-hole puncher was used to bore 54 explants from leaves collected from each tree of …

Molecular And Morphological Data Reveal Three New Cryptic Species Of Chiasmocleis (Mehely 1904) (Anura, Microhylidae) Endemic To The Atlantic Forest, Brazil, Mauricio C. Forlani, João F. R. Tonini, Carlos A. G. Cruz, Hussam Zaher, Rafael O. De Sá

Biology Faculty Publications

Three new cryptic species of Chiasmocleis from the Atlantic Forest of Brazil are described. Two of these species occur in the northeastern states of Sergipe and Bahia, whereas the third species is found in the southeastern state of São Paulo. The new species can be distinguished from other congeneric species by the molecular data, as evidenced in the phylogeny, and by a combination of morphological characters including: size, foot webbing, dermal spines, and coloration patterns. Chiasmocleis species differ in osteological traits, therefore we also provide an osteological description of each new species and comparisons with data reported for other species …

The Hidden History Of Humming Frogs, Rafael O. De Sá

Biology Faculty Publications

In the depths of Brazil’s Atlantic Forest, researchers are battling to identify species before they are lost for good. Dr Rafael O de Sá, Professor of Biology at the University of Richmond, Virginia, USA, specialises in a group known as the ‘narrow-mouthed frogs’ and has already found four species new to science.

High Genetic Diversity But Low Population Structure In The Frog Pseudopaludicola Falcipes (Hensel, 1867) (Amphibia, Anura) From The Pampas Of South America, José A. Langone, Arley Camargo, Rafael O. De Sá

Biology Faculty Publications

Relative to South America’s ecoregions, the temperate grasslands of the Pampas have been poorly studied from a phylogeographic perspective. Based on an intermediate biogeographic setting between subtropical forest (Atlantic Forest) and arid ecosystems (Chaco and Patagonia), Pampean species are expected to show unstable demographic histories due to the Quaternary climatic oscillations. Herein, we investigate the phylogenetic relatedness and phylogeographic history of Pseudopaludicola falcipes, a small and common frog that is widely distributed across the Pampean grasslands. First, we use molecular data to assess if P. falcipes represents a single or multiple, separately evolving cryptic lineages. Because P. falcipes is …

Two New Species Of Geosesarma De Man, 1892 (Crustacea: Brachyura: Sesarmidae) From Palawan, The Philippines, Hendrik Freitag, Marivene Manuel-Santos, Peter K.L Ng

Biology Faculty Publications

Two new and relatively large species of semi-terrestrial sesarmid crabs of the genus Geosesarma De Man, 1892, are described from Palawan Island, Philippines. They are distinguishable from congeners by the characteristic structure of their carapace, chelipeds, ambulatory legs and male first gonopods. Aspects of their ecology are briefly discussed

Clues To Aquatic Beetle Research In Southeast Asia: A Multitude Of Ecological Niches, Microhabitats And Deduced Field Sampling Techniques, Hendrik Freitag

Biology Faculty Publications

The basic ecological classification of Southeast Asian beetle families that are associated with aquatic habitats is reviewed. The microhabitat preferences of the taxa are examined on family level with generic examples. Suitable collection methods for quantitative and qualitative sampling are suggested which take into account the different ecological adaptation patterns and microhabitat preferences.

Persistence And Stability Of Eastern Afromontane Forests: Evidence From Brevicipitid Frogs, Simon P. Loader, F. Sara Ceccarelli, Michele Menegon, Kim M. Howell, Roman Kassahun, Abebe A. Mengistu, Samy A. Saber, Fikirte Gebresenbet, Rafael O. De Sá, Et Al.

Biology Faculty Publications

Aim: The persistence and stability of habitats through time are considered predictors of high levels of biodiversity in some environments. Long-term habitat persistence and stability may explain the species-rich, endemic forest fauna and flora of the Eastern Afromontane Biodiversity Region (EABR). Using comple- mentary phylogenetic and biogeographical approaches, we examine evolution- ary patterns in EAR brevicipitid frogs. Using these data, we test whether brevicipitid history reflects patterns of long-term forest persistence and/or sta bility across the EABR.

Location: East Africa.

Methods: A dated phylogeny for brevicipitids was constructed using two nuclear and three mitochondrial markers. Alternative diversification modes were used …

A Threat To New Zealand's Tuatara Heats Up, Kristine L. Grayson, Nicola J. Mitchell, Nicola J. Nelson

Biology Faculty Publications

No matter how many times we head to one of New Zealand's offshore islands, the feelings are always a mix of sheer awe at the beauty and biodiversity preserved in these special refuges and lingering nerves. Did we remember all the gear? Do we have enough food and water in case we get stuck? Can the helicopter land on the side of a cliff in these winds? These epic journeys are in pursuit of a lone remnant of the reptile evolutionary tree, with a unique ecology that has big implications under climate change.

Sex Ratio Bias And Extinction Risk In An Isolated Population Of Tuatara (Sphenodon Punctatus), Kristine L. Grayson, Nicola J. Mitchell, Joanne M. Monks, Susan N. Keall, Joanna N. Wilson, Nicola J. Nelson

Biology Faculty Publications

Understanding the mechanisms underlying population declines is critical for preventing the extinction of endangered populations. Positive feedbacks can hasten the process of collapse and create an ‘extinction vortex,’ particularly in small, isolated populations. We provide a case study of a male-biased sex ratio creating the conditions for extinction in a natural population of tuatara (Sphenodon punctatus) on North Brother Island in the Cook Strait of New Zealand. We combine data from long term mark-recapture surveys, updated model estimates of hatchling sex ratio, and population viability modeling to measure the impacts of sex ratio skew. Results from the mark-recapture …