Aquaculture and Fisheries Commons^™

An Examination Of The Eastern Nebraska And Western Iowa Flash Flood Event Of 6-7 August 1999, Catherine M. Zapotocny

NOAA Technical Reports and Related Materials

Flash flooding occurs each summer in eastern Nebraska and western Iowa. While 10-inch rains are extraordinary, it is not uncommon to have at least one excessive rain event during the annual convective season. A significant flash flood occurred in east central Nebraska and western Iowa the night of August 6, 1999 into the morning of August 7, 1999. Antecedent hydrologic conditions limited the loss of life, however considerable property damage resulted as the heavy rain fell over the urbanized areas in eastern Nebraska and western Iowa.

Several flash flood ingredients came together over the area. These meteorological factors are typical …

Animal Conservation In St. Louis, Kate O'Sullivan

Undergraduate Research Symposium

St. Louis has a multitude of organizations involved in the natural sciences. But how many of them actually contribute towards animal conservation? The St. Louis Zoo is an organization that focuses a lot of its effort on presentation, so how does that impact the funds that go towards actually saving the animals? I plan to dive into the different animal-based organizations in St. Louis and its surrounding areas, as well as discuss the positives and negatives of each organization. Furthermore, I will provide examples from several sources that I have been reviewing all year to support my claims. I plan …

Dataset For: “Shifts In Habitat, Habitat Use, And Demography Of American Lobsters In Coastal Maine Over The Past Quarter Century.”, Robert Jarrett Ii, Damian Brady, Richard Wahle, Robert Steneck

Non-Thesis Student Work

This is the dataset for the manuscript "Shifts in habitat, habitat use, and demography of American lobsters in coastal Maine over the past quarter century." Our study revisited 20 long-term monitored sites at 10 m depth along more than 320 km of the Gulf of Maine. Sampling used quadrat sampling via scuba divers. We recorded fundamental changes in lobster habitat use and distribution. The data include count, size, sex, number of claws, and shelter use of lobster in addition to substrate type, percent cover of kelp and other macroalgae. The data are included in six .csv format files: (1) data …

Complex Dynamics Of Coral Gene Expression Responses To Low Ph Across Species, Veronica Z. Radice, Ana Martinez, Adina Paytan, Donald C. Potts, Daniel J. Barshis

Biological Sciences Faculty Publications

Coral capacity to tolerate low pH affects coral community composition and, ultimately, reef ecosystem function. Low pH submarine discharges (‘Ojo’; Yucatán, México) represent a natural laboratory to study plasticity and acclimatization to low pH in relation to ocean acidification. A previous >2‐year coral transplant experiment to ambient and low pH common garden sites revealed differential survivorship across species and sites, providing a framework to compare mechanistic responses to differential pH exposures. Here, we examined gene expression responses of transplants of three species of reef‐building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities …

Landings, Vol. 31, No. 12, Maine Lobstermen’S Community Alliance, Rebecca Nuzzi, Amber-Jean Nickel

Landings: News & Views from Maine's Lobstering Community

Landings content emphasizes science, history, resource sustainability, economic development, and human interest stories related to Maine's lobster industry. The newsletter emphasizes lobstering as a traditional, majority-European American lifeway with an economic and social heritage unique to the coast of Maine. The publication focuses how ongoing research to engage in sustainable, non-harmful, and non-wasteful commercial fishing practices benefit both the fishery and Maine's coastal legacy.

For more information, please visit the Maine Lobstermen’s Community Alliance (MLCA) website.

Draft West Coast Rock Lobster Resource Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries management papers

Harvest strategies for Western Australia’s (WA) aquatic resources are formal documents developed by the Department of Primary Industries and Regional Development (DPIRD, the Department) to support decision-making processes that ensure the outcomes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002a) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). Harvest strategies are a key component of all contemporary fishery management systems and a requirement for certification under the Marine Stewardship Council (MSC). The objectives of ESD are reflected in the objectives of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act …

Representations And Realities: Misali Island's Biodiversity In Hybrid Narratives, Justin Ross Whitney

Independent Study Project (ISP) Collection

Marine Protected Areas (MPAs) are complex organisms that ebb and flow between strict and unyielding conservation doctrines often at the cost of community engagement. Misali Island is different. Conceived and advocated for by community members, this organism has navigated a tumultuous tenure of environmental degradation, periods of high and low funding, and a looming tourism presence. On top of these challenges has been a growing fishing community attempting to share in the bounty of this shockingly biodiverse setting. This study sorts through the grey space of Misali Island by applying a hybrid narrative that interfaces the marine context of the …

South Coast Offshore Crustacean Resource Of Western Australia Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries management papers

Harvest strategies for aquatic resources in Western Australia (WA) that are managed by the Department of Primary Industries and Regional Development (DPIRD, the Department) are formal documents that ensures decision-making processes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act 2016 (ARMA), which is anticipated replace the FRMA once enacted. At this point, the Fish Resources Management Regulations 1995 (FRMR) is also anticipated to …

Incorporating Metapopulation Dynamics To Inform Invasive Species Management: Evaluating Bighead And Silver Carp Control Strategies In The Illinois River, Jahn Kallis, Richard Erickson, D. P. Coulter, Alison A. Coulter, Marybeth K. Brey, Matt Catalano, John Dettmers, James Garvey, Kevin Irons, Elizabeth Marschall, Kenneth Rose, Mark Wildhaber, David Glover

Natural Resource Management Faculty Publications

1. Invasive species management can benefit from predictive models that incorporate spatially explicit demographics and dispersal to guide resource allocation decisions.
2. We used invasive bigheaded carps (Hypophthalmichthys spp.) in the Illinois River, USA as a case study to create a spatially explicit model to evaluate the allocation of future management efforts. Specifically, we compared additional harvest (e.g. near the invasion front vs. source populations) and enhanced movement deterrents to meet the management goal of reducing abundance at the invasion front.
3. We found additional harvest in lower river pools (i.e. targeting source populations) more effectively limited population sizes upriver …

Benthic Beasts: The Ecological Significance Of Lake Sturgeon And Blue Catfish In Eastern Appalachian Waterways, Stewart Thacker

Research Day

East Tennessee freshwater ecosystems comprise an abundance of an extremely diverse selection of species. This presentation examines Acipenser fulvescens and Ictalurus furcatus, two of the largest freshwater fish in the Appalachian area, which play significant ecological roles within the benthic dimension of our freshwater environments. Commonly known as “bottom-feeders,” Benthivorous species enjoy a broad range of food sources including other fish, detritus, crustaceans, and more. The extensive variety of food consumed by A. fulvescens and I. furcatus permits population control of other, denser, aquatic populations inhabiting other regions of the water column, as well as other organisms included …

Blanding’S Turtle (Emydoidea Blandingii): Species Conservation Assessment, Melissa J. Panella, Colleen Rothe-Groleau

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Blanding’s turtle (Emydoidea blandingii) as a Tier 1 at-risk species. Some general management recommendations are made here regarding Blanding’s turtles; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of this at-risk turtle that will aid in the decision-making …

Integrating Human Dimensions In Decadal-Scale Prediction For Marine Social Ecological Systems: Lighting The Grey Zone, Jess Melbourne-Thomas, Desiree Tommasi, Marion Gehlen, Eugene J. Murphy, Jennifer Beckensteiner, Francisco Bravo, Tyler D. Eddy, Mibu Fischer, Elizabeth Fulton, Mayya Gogina, Eileen Hofmann, Maya Ito, Sara Mynott, Kelly Ortega-Cisneros, Anna N. Osiecka, Mark R. Payne, Romeo Saldívar-Lucio, Kim J.N. Scherrer

CCPO Publications

The dynamics of marine systems at decadal scales are notoriously hard to predict-hence references to this timescale as the "grey zone" for ocean prediction. Nevertheless, decadal-scale prediction is a rapidly developing field with an increasing number of applications to help guide ocean stewardship and sustainable use of marine environments. Such predictions can provide industry and managers with information more suited to support planning and management over strategic timeframes, as compared to seasonal forecasts or long-term (century-scale) predictions. The most significant advances in capability for decadal-scale prediction over recent years have been for ocean physics and biogeochemistry, with some notable advances …

Diets Of Invasive Channel Catfish Are Subsidized By Invasive Riparian Trees, Christopher A. Cheek, Brandon K. Peoples, Reuben R. Goforth

Natural Resource Management Faculty Publications

Russian olive (Elaeagnus angustifolia) is an invasive, fruit- bearing riparian tree that dominates riparian zones of the San Juan River in the southwestern United States. Previous research in this river suggests olive fruit is common in diets of invasive channel catfish (Ictalurus punctatus), but its energetic importance is unknown (i.e. critical for catfish fitness vs. incidental consumption). We assessed Russian olive consumption in channel catfish diets bimonthly for 1 year, hypothesizing that olive consumption would be greatest during periods of high olive availability and low benthic aquatic invertebrate availability. We found that catfish consumed olive fruit throughout the year and …

Quantifying Antarctic Krill Connectivity Across The West Antarctic Peninsula And Its Role In Large-Scale Pygoscelis Penguin Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of krill may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis spp. penguins that breed along the WAP during the austral summer. Antarctic krill are also heavily fished commercially; therefore, understanding population connectivity of krill is critical to effective management. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across …

Aquaculture In Africa: Aquatic Animal Welfare, Impact On The Environment And The Sustainability Of The Sector, Mwenda M. Mbaka, Janice H. Cox, Stephen Ronan

Aquaculture

The African aquaculture sector recorded the fastest growth in the world between 2006-2018, averaging 10% or more, and is expected to partially fill the growing fish supply-demand gap up to 2063. In 2018, there were about 1.2 million aquafarmers across the continent, an increase from 920 thousand in 2014. According to the African Development Bank, expansion of aquaculture in Africa is hampered by "the overwhelming predominance of tilapia farming, which relies heavily on the production of fingerlings from a limited number of genetically improved strains that are resistant to the many diseases affecting this species, and on the production of …

Estimating Fish Diet In Lake Turkana, Kenya, Julia G. Sharapi

Student Publications

Lake Turkana, located in northern Kenya on the Ethiopian border, is the world’s largest permanent desert lake. Over 90% of its flow originates from the Omo River in Ethiopia, which causes the lake to have seasonal rises and falls in water level. The Omo River has been subject to the construction of five dams (the Gilgel Gibe dams) and several irrigation projects. These developments will impact the amount of water entering the lake, with implications for lake chemistry and productivity, littoral habitat availability, and the breeding biology of the lake’s fishes. Though ongoing upstream changes are likely to have serious …

3d Library From Body Size From Unconventional Specimens: A 3d Geometric Morphometrics Approach To Fishes From Ancestral Pueblo Contexts, Jonathan Dombrosky, Thomas F. Turner, Alexandra Harris, Emily Lena Jones

Anthropology Faculty & Staff Publications

Animal body size estimation from zooarchaeological specimens often relies on specific, one-dimensional (i.e., conventional) measures from skeletal elements. Here, we introduce an animal body size estimation technique for archaeological fishes that relies on 3D reference scans and the calculation of centroid size, a standard 3D geometric morphometric proxy measure for organism size. Centroid size-based estimations on whole caudal vertebrae are strongly correlated with a widely accepted measure (i.e., centrum width), but the scalability and flexibility of the centroid size-based approach allows for use on a wide variety of fragmented remains. We use zooarchaeological fish remains (subfamily Ictiobinae) from late pre-Hispanic …

Larval Fish Abundance In The Benthic And Surface Drift Of The Missouri River, Ryan L. Ruskamp

Department of Agricultural Leadership, Education and Communication: Dissertations, Theses, and Student Scholarship

Knowledge of the larval fish community of the Missouri River is one of the biggest gaps in fisheries research. The Nebraska Game and Parks Commission has sampled the drift of the Missouri River for many years (1983-2015), but these data have not been compiled into a unified assessment. Therefore, the objectives of this study were to: 1) quantify temporal and spatial aspects of larval fish community composition (richness) and structure (abundance) of the surface drift, 2) quantify associations of larval fish communities of the drift to different discharges of the Missouri River, 3) quantify the larval benthic drift community, and …

The Role Of Leaf Decomposition In Macroinvertebrate Colonization, Bethany Mabel Lian Schorr, Kevin Geedey

Independent Research Projects

Decomposition plays an important ecological role in carbon and nutrient cycling that supply food and energy resources to food webs. This study investigates the potential role that leaf decomposition of different leaf species may play in macroinvertebrate assemblages in upper Midwest streams. We hypothesized that the different decomposition rates experienced with different leaf species and in different streams would have an effect on invertebrate colonization due to the variance in nutrient availability. Due to altered fire regimes and other influences, forests are experiencing declines in fire-adapted, heliophytic species such as oaks and compositional shifts toward shade-tolerant, mesophytic species such as …

Invasive Plants Watch List: 2022, Allison Zach

Nebraska Invasive Species Program

The purpose of the weed watch list is to collect data on the distribution of invasive plants found in various Nebraska counties. Counties were divided up into ‘ecoregions’ based on the Nebraska Game & Parks Commission’s Legacy Plan (map of regions below). The plants in the watch list have been identified based on their invasiveness in surrounding states and their increasing range in Nebraska. Data collected on watch list plant species distribution has been used to support the listing or delisting of noxious weeds. Plant species in the weed watch list are categorized based on early detection and rapid response …

Seasonal Reproductive Allocation In Landlocked Alewife Alosa Pseudoharengus, In The Context Of Niche Construction And Eco-Evolutionary Feedbacks, Foivos Mouchlianitis, Eric T. Schultz, Kostas Ganias

EEB Articles

The bidirectional dynamics between species and their biotic and abiotic environments, known as eco-evolutionary feedbacks, may shift the direction of evolution and alter the ecological role of species. Alewife, Alosa pseudoharengus, is an exemplary species to study reciprocal feedbacks between ecology and evolution, owing to repeated independent derivations of a landlocked life history from an ancestral anadromous form. In this study we analysed the reproductive allocation during the spawning season in a landlocked Alewife population in the context of eco-evolutionary feedbacks. We also compared our findings with previous results from a neighbouring anadromous population of the species. Similarities were found …

Stomach Contents And Stable Isotope Analysis Reveal Ontogenetic Shifts And Spatial Variability In Brama Australis Diet, Sebastian A. Klarian, Eric T. Schultz, María Francisca Hernández, Juan Antonio Valdes, Francisco Fernandoy, Mónica Barros, Sergio Neira, Hugo Arancibia

EEB Articles

Many marine fisheries rely on production and energy flow in the pelagic zone, thus sustainable management of exploited pelagic fishes benefits from insight into temporal, spatial and ontogenetic variability in the trophic ecology of these species. Here we analyze stomach contents and stable isotopes to reveal spatial variability (focusing on two fishing grounds, north and south of an oceanographic barrier in the Pacific Ocean) and ontogenetic changes (contrasting immature and mature) in Southern Ray’s Bream (Brama australis) diet composition in Chilean waters. Stomach contents analysis indicated that euphausiids were predominant components of the diet in both fishing grounds and ontogenetic …

Temporal Stability Of Seagrass Extent, Leaf Area, And Carbon Storage In St. Joseph Bay, Florida: A Semi-Automated Remote Sensing Analysis, Marie Cindy Lebrasse, Blake A. Schaeffer, Megan M. Coffer, Peter J. Whitman, Richard C. Zimmerman, Victoria J. Hill, Kazi A. Islam, Jiang Li, Christopher L. Osburn

OES Faculty Publications

Seagrasses are globally recognized for their contribution to blue carbon sequestration. However, accurate quantification of their carbon storage capacity remains uncertain due, in part, to an incomplete inventory of global seagrass extent and assessment of its temporal variability. Furthermore, seagrasses are undergoing significant decline globally, which highlights the urgent need to develop change detection techniques applicable to both the scale of loss and the spatial complexity of coastal environments. This study applied a deep learning algorithm to a 30-year time series of Landsat 5 through 8 imagery to quantify seagrass extent, leaf area index (LAI), and belowground organic carbon (BGC) …

Underwater Video As A Tool To Quantify Fish Density In Complex Coastal Habitats, Ronald Baker, Dakota Bilbrey, Aaron Bland, Frank D’Alonzo Iii, Hannah Ehrmann, Sharon Havard, Zoe Porter, Sarah Ramsden, Alexandra Rodriquez

University Faculty and Staff Publications

Habitat loss is a serious issue threatening biodiversity across the planet, including coastal habitats that support important fish populations. Many coastal areas have been extensively modified by the construction of infrastructure such as ports, seawalls, docks, and armored shorelines. In addition, habitat restoration and enhancement projects often include constructed breakwaters or reefs. Such infrastructure may have incidental or intended habitat values for fish, yet their physical complexity makes quantitatively sampling these habitats with traditional gears challenging. We used a fleet of unbaited underwater video cameras to quantify fish communities across a variety of constructed and natural habitats in Perdido and …

Population Dynamics, Relative Abundance, And Habitat Suitability Of Adult Red Drum (Sciaenops Ocellatus) In Nearshore Waters Of The North-Central Gulf Of Mexico, Crystal Hightower, J. Marcus Drymon, Amanda E. Jefferson, Matthew B. Jargowsky, Emily A. Seubert, Simon Dedman, John Mareska, Sean P. Powers

University Faculty and Staff Publications

In the Gulf of Mexico, the red drum (Sciaenops ocellatus) is an immensely popular sportfish, yet the Gulf of Mexico stock is currently managed as data-limited in federal waters. The results of the federal stock assessment conducted in 2016 for Gulf of Mexico red drum were not recommended for providing management advice. Consequently, we sought to address data gaps highlighted in the assessment by producing up-to- date overall and sex-specific growth models, standardized indices of relative abundance, and predictions of habitat suitability and by updating estimates of natural mortality. Using a time series for the period of 2006–2018, we assigned …

Fish And Invertebrate Use Of Restored Vs. Natural Oyster Reefs In A Shallow Temperate Latitude Estuary, Jonathan H. Grabowski, Christopher J. Baillie, Adam Baukus, Rachael Carlyle, F. Joel Fodrie, Rachel K. Gittman, A. Randall Hughes, David L. Kimbro, Juhyung Lee, Hunter S. Lenihan, Sean P. Powers, Kevin Sullivan

University Faculty and Staff Publications

Coastal marine habitats continue to be degraded, thereby compelling largescale restoration in many parts of the world. Whether restored habitats function similarly to natural habitats and fully recover lost ecosystem services is unclear. In estuaries, oyster reefs have been degraded by multiple anthropogenic activities including destructive fishing practices and reduced water quality, motivating restoration to maintain oyster fisheries and other ecosystem services, often at relatively high cost. We compared fish and invertebrate communities on recently restored (0–1 year post-restoration), older restored (3–4 years post-restoration), and natural oyster reefs to determine if and when restored reefs support functionally similar faunal communities. …

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 1. Model Development And Verification, Daphne M. Munroe, Eric N. Powell, John M. Klinck, Andrew M. Scheld, Sarah Borsetti, Jennifer Beckensteiner, Eileen E. Hofmann

CCPO Publications

Competing pressures imposed by climate-related warming and offshore development have created a need for quantitative approaches that anticipate fisheries responses to these challenges. This study used a spatially explicit, ecological-economic agent-based model integrating dynamics associated with Atlantic surfclam stock biology, decision-making behavior of fishing vessel captains, and fishing fleet behavior to simulate stock biomass, and fishing vessel catch, effort and landings. Simulations were implemented using contemporary Atlantic surfclam stock distributions and characteristics of the surfclam fishing fleet. Simulated distribution of fishable surfclam biomass was determined by a spatially varying mortality rate, fishing by the fleet was controlled by captain decisions …

Otoliths Of South-Western Australian Fish: A Photographic Catalogue, Chris Dowling, Kim Smith, Elain Lek, Joshua Brown

Fisheries research reports

Due to the species-specific nature of otoliths and given they are often the only part of the fish preserved when fish die, otolith catalogues can be used in numerous applications, such as diet studies in fish eating animals, including pinnipeds, fish and sea birds; archaeological purposes such as reconstructing indigenous people’s diets from otoliths found in middens or evolutionary history of fish species by comparing fossilized otoliths. Given the unique mixture of subtropical and temperate fish, including many endemic species that occur off the southwest corner of WA having a catalogue for this area is extremely important for people working …

Maine-Edna: Sustaining Coastal Ecosystems In Maine And Beyond, Maine Epscor

General University of Maine Publications

Maine Environmental DNA (Maine-eDNA) is a statewide, multi-institutional initiative establishing Maine as a natural leader in environmental monitoring, ecological understanding and sustainability of coastal ecosystems through research, education, and outreach.

Vignette 04: Olympia Oysters, Jodie Toft, Betsy Peabody

Institute Publications

Olympia oysters (Ostrea lurida) are our only native oyster species here in the Salish Sea. Olympia oysters once covered an estimated 13-26% of the intertidal area in Puget Sound, mostly near the heads of inlets. A combination of overharvest, pollution, and habitat loss reduced the current population to less than 4% of historic numbers, though sparse numbers of Olympia oysters can still be found throughout most of their historic distribution. Looking to the future, as our region’s marine waters experience effects of climate change and ocean acidification (OA), native species such as the Olympia oyster may prove to …