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Full-Text Articles in Aquaculture and Fisheries

Penobscot River Restoration, Catherine Schmitt Nov 2016

Penobscot River Restoration, Catherine Schmitt

Maine Sea Grant Publications

BETWEEN THE HEAD of tide above Bangor to where it widens into the bay at Searsport, the Penobscot River shifts from a flowing freshwater waterway banked by cedar and pine to a brackish, wave-lapped marsh with a rocky shoreline. In this estuary, salt concentrations fluctuate as the winds and tides push sea water and sediments back and forth. The estuary and the river that feeds it have taken on a new character recently, and have become an international example of watershed restoration. Despite two centuries of intensive timber harvesting and pulp and paper manufacturing, and the construction of hundreds of …


Calibration Of Vims Research Vessel Catch Data To Ensure Continuity Of Recruitment Indices For The Chesapeake Bay Region, Mary C. Fabrizio, Troy D. Tuckey Nov 2016

Calibration Of Vims Research Vessel Catch Data To Ensure Continuity Of Recruitment Indices For The Chesapeake Bay Region, Mary C. Fabrizio, Troy D. Tuckey

Reports

The VIMS Juvenile Fish Trawl Survey, which has been in operation since 1955, has undergone considerable changes to the sampling gear, location of sampling sites, and the methodology used to select sampling sites. Recently, a new vessel, the R/V Tidewater, replaced the R/V Fish Hawk, which had been in service for 25 years. In addition to the change in vessel, a new net was used; this net design is more robust to deployment methods and performs more consistently under varying environmental conditions. Therefore, a calibration study was conducted whereby the two research vessels with different nets fished in the same …


Population Size And Survival Rates Of Blue Catfish In Chesapeake Bay Tributaries, Mary C. Fabrizio, Troy D. Tuckey, Robert J. Latour, Gary C. White, Alicia J. Norris, Mary Groves Nov 2016

Population Size And Survival Rates Of Blue Catfish In Chesapeake Bay Tributaries, Mary C. Fabrizio, Troy D. Tuckey, Robert J. Latour, Gary C. White, Alicia J. Norris, Mary Groves

Reports

This report comprises two studies conducted from 2012 to 2015 to estimate population size, survival rates, and movements of invasive blue catfish in Chesapeake Bay tributaries. The first study of population-size and survival was conducted in the James River, VA (Population Size and Survival Rates of Invasive Blue Catfish in Tidal Waters of the James River Subestuary). The second study on movement and survival of blue catfish was conducted in the Potomac River, the natural boundary between Maryland and Virginia (Movement Patterns and Survival Rate of Blue Catfish in a Non-Native Habitat Estimated with a Tagging Study). The Executive Summary …


Testing Raised Foot Lines In Virginia's Striped Bass Fishery: A Gear Based Method Of Reducing Sturgeon Interactions In Anchored Gillnets, Thomas J. Murray Nov 2016

Testing Raised Foot Lines In Virginia's Striped Bass Fishery: A Gear Based Method Of Reducing Sturgeon Interactions In Anchored Gillnets, Thomas J. Murray

Reports

Working with commercial fishermen and scientists, the project evaluated the efficacy of altering net designs to achieve reductions in incidental contacts with protected species while maintaining harvest efficiency. In addition project participants assisted in the transfer of the new gear technology to industry as a gear-based method to reduce sturgeon interactions in gillnets targeting striped bass. The intent was to raise the effective fishing depth (webbing) of anchored gillnets interactions with protected Atlantic sturgeon while not impacting direct harvest of striped bass, the target species. The gear was shown to not impact Catch Per Unit Effort (CPUE) of the directed …


Assessing Ecological And Economic Effects Of Derelict Fishing Gear: A Guiding Framework, Christopher F.G. Jeffrey, Kirk J. Havens, H. Ward Slacum Jr., Donna Marie Bilkovic, Danielle Zaveta, Andrew M. Scheld, Sean Willard, John D. Evans Oct 2016

Assessing Ecological And Economic Effects Of Derelict Fishing Gear: A Guiding Framework, Christopher F.G. Jeffrey, Kirk J. Havens, H. Ward Slacum Jr., Donna Marie Bilkovic, Danielle Zaveta, Andrew M. Scheld, Sean Willard, John D. Evans

Reports

Developing standardized protocols to assess the ecological and socio-economic effects of marine debris – especially, derelict fishing gear – is critical for the protection of natural resources and for evaluating policies and programs designed to reduce and remove debris. This document outlines a Derelict Fishing Gear Assessment Framework to guide the development and implementation of derelict gear assessment, management and mitigation. The framework draws from techniques and protocols developed to assess derelict crab traps effects in the Chesapeake Bay and on past derelict gear assessments either conducted by or known to the framework authors. However, this framework is generalized and …


Ecological And Economic Effects Of Derelict Fishing Gear In The Chesapeake Bay 2015/2016 Final Assessment Report, Donna M. Bilkovic, H. Ward Slacum Jr., Kirk J. Havens, Danielle Zaveta, Christopher F.G. Jeffrey, Andrew M. Scheld, David Stanhope, Kory Angstadt, John D. Evans Oct 2016

Ecological And Economic Effects Of Derelict Fishing Gear In The Chesapeake Bay 2015/2016 Final Assessment Report, Donna M. Bilkovic, H. Ward Slacum Jr., Kirk J. Havens, Danielle Zaveta, Christopher F.G. Jeffrey, Andrew M. Scheld, David Stanhope, Kory Angstadt, John D. Evans

Reports

Derelict fishing gear represents a major challenge to marine resource management: whether through deliberate abandonment or through accidental loss, derelict traps in particular have significant negative effects both economic (e.g., reduced fishery harvest from ghost fishing and gear competition that leads to the reduced efficiency of active gear) and ecological (e.g., degraded habitats and marine food webs and crab and bycatch mortality). Throughout the Chesapeake Bay, commercial harvest of hard-shelled blue crabs is a major fishing activity: every year sees the deployment of several hundred thousand blue crab traps (known locally as crab “pots”) across the Bay, of which an …


Simulations Of The Effect Of Sample Size On The Maximum Observed Age In A Fish Population, John M. Hoenig Oct 2016

Simulations Of The Effect Of Sample Size On The Maximum Observed Age In A Fish Population, John M. Hoenig

Reports

No abstract provided.


Fish Diversity And Coral Health Of Tanzania's Reefs: A Comparative Study Between The Ushongo Village Reef And The Fungu Zinga Reef Over Time, Della Turque, Corinne Casper Oct 2016

Fish Diversity And Coral Health Of Tanzania's Reefs: A Comparative Study Between The Ushongo Village Reef And The Fungu Zinga Reef Over Time, Della Turque, Corinne Casper

Independent Study Project (ISP) Collection

The world’s oceans are becoming increasing acidic due to global climate change, posing a threat to marine ecosystems, including coral carbonate systems. Environmental threats are exacerbated by human development stressors as well: growing populations, dependency on marine resources, and unsustainable practices invaluable marine ecosystems at risk. Tanzania’s coral reef system extends for 3580 km2 (Muhando et al. 2008) near the Tanga region, serving over half a million people who are highly dependent on fishing and other marine resources as their livelihoods (Samoilys et. al. 2008). With Tanzania’s population rapidly growing, the unsustainable pressure on coral reefs for sustenance and livelihood …


Estimating Relative Juvenile Abundance Of Ecologically Important Finfish In The Virginia Portion Of Chesapeake Bay (1 June 2015 - 31 May 2016) : 2016 Annual Report, Troy D. Tuckey, Mary C. Fabrizio Sep 2016

Estimating Relative Juvenile Abundance Of Ecologically Important Finfish In The Virginia Portion Of Chesapeake Bay (1 June 2015 - 31 May 2016) : 2016 Annual Report, Troy D. Tuckey, Mary C. Fabrizio

Reports

The Trawl Survey provides crucial data to state, regional, and national fisheries management agencies, including the Virginia Marine Resources Commission (VMRC), the Atlantic States Marine Fisheries Commission (ASMFC), the Mid‐Atlantic Fisheries Management Council (MAFMC), and the National Marine Fisheries Service (NMFS). The MAFMC recognizes the juvenile trawl survey as one of the key predictors of Summer Flounder recruitment. Annual indices of juvenile abundance have been generated from trawl survey data for species of key recreational, ecological, and commercial importance in the Virginia portion of Chesapeake Bay. These include Spot, Atlantic Croaker, Weakfish, Summer Flounder, Black Sea Bass, Scup, Striped Bass, …


Aquaculture In Shared Waters Fact Sheet: Kelp Aquaculture, Sarah Redmond, Sam Belknap, Rebecca Clark Uchenna Jul 2016

Aquaculture In Shared Waters Fact Sheet: Kelp Aquaculture, Sarah Redmond, Sam Belknap, Rebecca Clark Uchenna

Maine Sea Grant Publications

“Kelp” are large brown marine macroalgae species native to New England and traditionally wild harvested for food. There are three commercially important kelp species in Maine—sugar kelp (Saccharina latissima), winged kelp (Alaria esculenta), and horsetail kelp (Laminaria digitata). Maine is developing techniques for culturing kelp on sea farms as a way for fishermen and farmers to diversify their operations while providing a unique, high quality, nutritious vegetable seafood for new and existing markets. Kelp is grown on submerged horizontal long lines on leased sea farms from September to May, making it a “winter crop” for Maine. The simple farm design, …


Automated Detection Of Deep-Sea Animals, Dallas J. Hollis, Duane Edgington, Danelle Cline Jul 2016

Automated Detection Of Deep-Sea Animals, Dallas J. Hollis, Duane Edgington, Danelle Cline

STAR Program Research Presentations

The Monterey Bay Aquarium Research Institute routinely deploys remotely operated underwater vehicles equipped with high definition cameras for use in scientific studies. Utilizing a video collection of over 22,000 hours and the Video Annotation and Reference System, we have set out to automate the detection and classification of deep-sea animals. This paper serves to explore the pitfalls of automation and suggest possible solutions to automated detection in diverse ecosystems with varying field conditions. Detection was tested using a saliency-based neuromorphic selective attention algorithm. The animals that were not detected were then used to tune saliency parameters. Once objects are detected, …


Integrated Assessment Of Oyster Reef Ecosystem Services: Macrofauna Utilization Of Restored Oyster Reefs, M. Lisa Kellogg, Kennedy T. Paynter, Paige G. Ross, Jennifer C. Dreyer, Cate Turner, Manisha Pant, Alan Birch, Edward Smith May 2016

Integrated Assessment Of Oyster Reef Ecosystem Services: Macrofauna Utilization Of Restored Oyster Reefs, M. Lisa Kellogg, Kennedy T. Paynter, Paige G. Ross, Jennifer C. Dreyer, Cate Turner, Manisha Pant, Alan Birch, Edward Smith

Reports

Within the Harris Creek Oyster Sanctuary in the Maryland portion of Chesapeake Bay, we evaluated relationships between basic oyster reef characteristics and the abundance and biomass of macrofauna. The eight sites selected for these studies included five restored oyster reef sites and three sites suitable for restoration that had not been restored. These sites encompassed a range of oyster biomass density and were spread throughout the sanctuary area. At each site one month prior to each of four sampling periods, divers filled four wire mesh baskets (0.1m2 surface area x 15 cm depth) with material from the site and embedded …


Chesapeake Aquaculture, Garth Woodruff May 2016

Chesapeake Aquaculture, Garth Woodruff

Faculty Publications

No abstract provided.


Virginia Game Fish Tagging Program Annual Report 2015, Susanna Musick, Lewis Gillingham May 2016

Virginia Game Fish Tagging Program Annual Report 2015, Susanna Musick, Lewis Gillingham

Reports

Through 2015, the Virginia Game Fish Tagging Program has maintained a 20-year database of records for tagged and recaptured fish. The program is a cooperative project of the Virginia Saltwater Fishing Tournament (under the Virginia Marine Resources Commission-VMRC) and the Virginia Institute of Marine Science (VIMS) of the College of William and Mary (under the VIMS Marine Advisory Program).


Integrated Assessment Of Oyster Reef Ecosystem Services: Fish And Crustacean Utilization And Trophic Linkages, M. Lisa Kellogg, Paige G. Ross, Mark Luckenbach, Jennifer C. Dreyer, Manisha Pant, Alan Birch, Sean Fate, Edward Smith, Kennedy Paynter Mar 2016

Integrated Assessment Of Oyster Reef Ecosystem Services: Fish And Crustacean Utilization And Trophic Linkages, M. Lisa Kellogg, Paige G. Ross, Mark Luckenbach, Jennifer C. Dreyer, Manisha Pant, Alan Birch, Sean Fate, Edward Smith, Kennedy Paynter

Reports

Using a regression design that encompassed the continuum of oyster reef biomass density in Harris Creek, MD, from unrestored reefs to those restored reefs with the greatest oyster biomass, we examined finfish and crustacean utilization of these habitats. Of the eight sites studied, three had not been subject to any restoration activities and five had been planted in 2012 with juvenile oysters set on oyster shell. All sites were sampled in April, June, August, and October 2015. During each sampling period, we assessed abundance, total length and biomass of finfish and examined gut contents to assess the diets of selected …


The Secret Life Of Eels, Catherine Schmitt Mar 2016

The Secret Life Of Eels, Catherine Schmitt

Maine Sea Grant Publications

An overview of the natural history, biology, and population status of the American eel in Maine, research on eels in the Penobscot River, and description of the fishery.


Questioning Ecosystem Assessment And Restoration Practices In A Major Urban Estuary: Perpetuating Myths Of Degradation In Spite Of Facts, John T. Tanacredi Ph.D., Martin P. Schreibman, Kevin Mcdonnell Feb 2016

Questioning Ecosystem Assessment And Restoration Practices In A Major Urban Estuary: Perpetuating Myths Of Degradation In Spite Of Facts, John T. Tanacredi Ph.D., Martin P. Schreibman, Kevin Mcdonnell

Faculty Works: CERCOM

The Jamaica Bay ecosystem is a dichotomy. It encompasses more than 12,000 acres of coastal estuarine marshes and an ecological diversity rivaling any coastal environment in the world. It is considerably altered, and is affected by a variety of ecological insults directly related to the fact that more than 14 million people live in its vicinity. Environmental protection institutions responded to the challenge of protecting the bay, surrounding wetlands and recreational benefits by addressing the increasing load of contaminants into the ecosystem. Billions of dollars have been spent during the past five decades on restoration attempts, including upgrading wastewater treatment …


Biodiversity And You., Garth Woodruff Feb 2016

Biodiversity And You., Garth Woodruff

Faculty Publications

No abstract provided.


Connecting Rivers For Healthy Ocean Fisheries, Catherine Schmitt Jan 2016

Connecting Rivers For Healthy Ocean Fisheries, Catherine Schmitt

Maine Sea Grant Publications

Across Maine, communities and land owners are reconnecting rivers and streams by improving road crossings, fixing broken culverts, and removing dams and other barriers. There are many reasons for doing this work, including preventing costly repairs associated with flooding and washouts, enhancing water quality, increasing wildlife habitat, and restoring fish populations. Connecting Rivers explores some of the ways that streams connect inland lakes and forests and the sea. This first fact sheet in the series focuses on connections between populations of migratory river fish (alewives and blueback herring) and groundfish (e.g., cod).


A Highly Sensitive Underwater Video System For Use In Turbid Aquaculture Ponds, Chin-Chang Hung, Shih-Chieh Tsao, Kuo-Hao Huang, Hsu-Kunag Chang, Fred C. Dobbs Jan 2016

A Highly Sensitive Underwater Video System For Use In Turbid Aquaculture Ponds, Chin-Chang Hung, Shih-Chieh Tsao, Kuo-Hao Huang, Hsu-Kunag Chang, Fred C. Dobbs

OES Faculty Publications

The turbid, low-light waters characteristic of aquaculture ponds have made it difficult or impossible for previous video cameras to provide clear imagery of the ponds' benthic habitat. We developed a highly sensitive, underwater video system (UVS) for this particular application and tested it in shrimp ponds having turbidities typical of those in southern Taiwan. The system's high-quality video stream and images, together with its camera capacity (up to nine cameras), permit in situ observations of shrimp feeding behavior, shrimp size and internal anatomy, and organic matter residues on pond sediments. The UVS can operate continuously and be focused remotely, a …


The Dilemma Of Derelict Gear: Datasets, Andrew M. Scheld, Donna M. Bilkovic, Kirk J. Havens Jan 2016

The Dilemma Of Derelict Gear: Datasets, Andrew M. Scheld, Donna M. Bilkovic, Kirk J. Havens

Data

No abstract provided.


The Contribution Of Marine Aggregate-Associated Bacteria To The Accumulation Of Pathogenic Bacteria In Oysters: An Agent-Based Model, Andrew M. Kramer, J. Evan Ward, Fred C. Dobbs, Melissa L. Pierce Jan 2016

The Contribution Of Marine Aggregate-Associated Bacteria To The Accumulation Of Pathogenic Bacteria In Oysters: An Agent-Based Model, Andrew M. Kramer, J. Evan Ward, Fred C. Dobbs, Melissa L. Pierce

OES Faculty Publications

Bivalves process large volumes of water, leading to their accumulation of bacteria, including potential human pathogens (e.g., vibrios). These bacteria are captured at low efficiencies when freely suspended in the water column, but they also attach to marine aggregates, which are captured with near 100% efficiency. For this reason, and because they are often enriched with heterotrophic bacteria, marine aggregates have been hypothesized to function as important transporters of bacteria into bivalves. The relative contribution of aggregates and unattached bacteria to the accumulation of these cells, however, is unknown. We developed an agent-based model to simulate accumulation of vibrio-type bacteria …


Potential Drivers Of Virulence Evolution In Aquaculture, David A. Kennedy, Gael Kurath, Ilana L. Brito, Maureen K. Purcell, Andrew F. Read, James R. Winton, Ar Wargo Jan 2016

Potential Drivers Of Virulence Evolution In Aquaculture, David A. Kennedy, Gael Kurath, Ilana L. Brito, Maureen K. Purcell, Andrew F. Read, James R. Winton, Ar Wargo

VIMS Articles

Infectious diseases are economically detrimental to aquaculture, and with continued expansion and intensification of aquaculture, the importance of managing infectious diseases will likely increase in the future. Here, we use evolution of virulence theory, along with examples, to identify aquaculture practices that might lead to the evolution of increased pathogen virulence. We identify eight practices common in aquaculture that theory predicts may favor evolution toward higher pathogen virulence. Four are related to intensive aquaculture operations, and four others are related specifically to infectious disease control. Our intention is to make aquaculture managers aware of these risks, such that with increased …


Vertical Movements Of Shortfin Mako Sharks Isurus Oxyrinchus In The Western North Atlantic Ocean Are Strongly Influenced By Temperature, Jeremy J. Vaudo, Bradley M. Wetherbee, Anthony D. Wood, Kevin C. Weng, Et Al Jan 2016

Vertical Movements Of Shortfin Mako Sharks Isurus Oxyrinchus In The Western North Atlantic Ocean Are Strongly Influenced By Temperature, Jeremy J. Vaudo, Bradley M. Wetherbee, Anthony D. Wood, Kevin C. Weng, Et Al

VIMS Articles

Although shortfin mako sharks Isurus oxyrinchus are regularly encountered in pelagic fisheries, limited information is available on their vertical distribution and is primarily restricted to cooler areas of their geographic range. We investigated the vertical movements of mako sharks across differing temperature regimes within the western North Atlantic by tagging 8 individuals with pop-up satellite archival tags off the northeastern United States and the Yucatan Peninsula, Mexico. Depth and temperature records across 587 d showed vertical movements strongly associated with ocean temperature. Temperatures150 m compared to only 1% in the coldest water columns. The sharks showed diel diving behavior, with …


The Status Of Virginia's Public Oyster Resource 2015, Melissa Southworth, Roger L. Mann Jan 2016

The Status Of Virginia's Public Oyster Resource 2015, Melissa Southworth, Roger L. Mann

Reports

This report summarizes data collected during 2015 in the Virginia portion of the Chesapeake Bay. The report is composed of two parts, part one, oyster recruitment (shell string) in Virginia and part two, dredge survey of selected oyster bars in Virginia.


Estimation Of Juvenile Striped Bass Relative Abundance In The Virginia Portion Of Chesapeake Bay : Annual Progress Report : 2015-2016, Christopher D. Davis, Mary C. Fabrizio, Troy D. Tuckey Jan 2016

Estimation Of Juvenile Striped Bass Relative Abundance In The Virginia Portion Of Chesapeake Bay : Annual Progress Report : 2015-2016, Christopher D. Davis, Mary C. Fabrizio, Troy D. Tuckey

Reports

The 2015 Striped Bass juvenile abundance index was 12.00 and was not significantly greater than the historic average of 8.63. Compared with their respective historic averages abundance indices from individual rivers in 2015 varied, such that significantly higher recruitment was observed in the Rappahannock River and average recruitment was observed in the James and York rivers. Relatively higher catches of young‐of‐the‐year Striped Bass at upriver and downriver auxiliary sites suggest expansion of Striped Bass nursery grounds in 2015. Unlike Striped Bass in Virginia waters, juvenile White Perch abundance indices in 2015 were significantly greater than the historic average for this …


Evaluating Recruitment Of American Eel, Anguilla Rostrata, In The Potomac River (Spring 2016), Troy D. Tuckey, Mary C. Fabrizio Jan 2016

Evaluating Recruitment Of American Eel, Anguilla Rostrata, In The Potomac River (Spring 2016), Troy D. Tuckey, Mary C. Fabrizio

Reports

American Eel (Anguilla rostrata) is a valuable commercial species along the Atlantic coast of North America from New Brunswick to Florida. Landings from Chesapeake Bay typically represent 60% of the annual United States commercial harvest (ASMFC 2012). American Eel is also important to the recreational fishery as it is often used live as bait for Striped Bass (Morone saxatilis) and Cobia (Rachycentron canadum). In 2012, Chesapeake Bay commercial landings of American Eel (771,536 lbs) were 72% of the U.S. landings (personal communication from the National Marine Fisheries Service, Fisheries Statistics Division). Since the 1980s, harvest along the U.S. Atlantic Coast …