Life Sciences Commons^™

Fire Treatment Effects On Vegetation Structure, Fuels, And Potential Fire Severity In Western Us Forests, Scott L. Stephens, Jason J. Moghaddas, Carl Edminster, Carl E. Fiedler, Sally Haase, Michael Harrington, Jon E. Keeley, Eric E. Knapp, James D. Mciver, Kerry Metlen, Carl N. Skinner, Andrew Youngblood

Forest Management Faculty Publications

Forest structure and species composition in many western U. S. coniferous forests have been altered through. re exclusion, past and ongoing harvesting practices, and livestock grazing over the 20th century. The effects of these activities have been most pronounced in seasonally dry, low and mid-elevation coniferous forests that once experienced frequent, low to moderate intensity,. re regimes. In this paper, we report the effects of Fire and Fire Surrogate (FFS) forest stand treatments on fuel load profiles, potential fire behavior, and fire severity under three weather scenarios from six western U. S. FFS sites. This replicated, multisite experiment provides a …

Evidence For The Evolution Of Reduced Mycorrhizal Dependence During Plant Invasion, Elizabeth K. Seifert, James D. Bever, John L. Maron

Biological Sciences Faculty Publications

Introduced species inevitably experience novel selection pressures in their new environments as a result of changes in mutualist and antagonist relationships. While most previous work has examined how escape from specialist enemies has influenced herbivore or pathogen resistance of exotic species, post-introduction shifts in exotic dependence on mutualists have not been considered. In a common environment, we compared dependence on AM fungi of North American and European populations of Hypericum perforatum (St. John's Wort), a forb native to Europe. Introduced North American populations responded less to inoculation with AM fungi than did European populations. Root architecture was strongly correlated with …

Linking Wildlife Populations With Ecosystem Change: State-Of-The-Art Satellite Ecology For National-Park Science, Mark Hebblewhite

Biological Sciences Faculty Publications

As human impacts increase in national parks and the greater ecosystems surrounding them, the National Park Service faces the difficulty of monitoring ecosystem changes and responses of key wildlife indicator species within parks. Responses of bison to trail grooming in Yellowstone National Park (Wyoming, Montana, and Idaho) and control of the animals once they leave the park (Bruggeman et al. 2007), migration of wildlife across park boundaries (Griffith et al. 2002; Berger 2004), effects of restored wolves on vegetation communities through trophic cascades (Hebblewhite et al. 2005), and responses of wildlife to the use of prescribed fires all represent problems …

The National Fire And Fire Surrogate Study: Effects Of Fuel Reduction Methods On Forest Vegetation Structure And Fuels, Dylan W. Schwilk, Jon E. Keeley, Eric E. Knapp, James Mciver, John D. Bailey, Christopher J. Fettig, Carl Fiedler, Richy J. Harrod, Jason J. Moghaddas, Kenneth W. Outcalt, Carl N. Skinner, Scott L. Stephens, Thomas A. Waldrop, Daniel A. Yaussy, Andrew Youngblood

Forest Management Faculty Publications

Changes in vegetation and fuels were evaluated from measurements taken before and after fuel reduction treatments (prescribed. re, mechanical treatments, and the combination of the two) at 12 Fire and Fire Surrogate (FFS) sites located in forests with a surface. re regime across the conterminous United States. To test the relative effectiveness of fuel reduction treatments and their effect on ecological parameters we used an information-theoretic approach on a suite of 12 variables representing the overstory (basal area and live tree, sapling, and snag density), the understory (seedling density, shrub cover, and native and alien herbaceous species richness), and the …

Functional Differences Within A Guild Of Tropical Mammalian Frugivores, Jedidiah F. Brodie, Olga E. Helmy, Warren Y. Brockelman, John L. Maron

Biological Sciences Faculty Publications

Many plants interact with groups of mutualist pollinators and seed dispersers. A key issue for both basic ecology and conservation is whether the different species within these guilds of mutualist animals are functionally equivalent. Comparing the relative effects of sympatric mutualists is important for understanding the evolution of multispecies mutualisms and for predicting mutualism stability in the face of anthropogenic change. However, empirical comparisons of the population-level impacts of mutualist animals on their host plant are rare, particularly for seed dispersal mutualisms in species-rich ecosystems. We compared the influence of three seed-dispersing tropical mammals, lar gibbons (Hylobates lar), …

Landscape Genomics And Biased Fst Approaches Reveal Single Nucleotide Polymorphisms Under Selection In Goat Breeds Of North-East Mediterranean, Lorraine Pariset, Stephane Joost, Paolo Ajmone Marsan, Alessio Valentini, Econogene Consortium

Biological Sciences Faculty Publications

Background: In this study we compare outlier loci detected using a F_st based method with those identified by a recently described method based on spatial analysis (SAM). We tested a panel of single nucleotide polymorphisms (SNPs) previously genotyped in individuals of goat breeds of southern areas of the Mediterranean basin (Italy, Greece and Albania). We evaluate how the SAM method performs with SNPs, which are increasingly employed due to their high number, low cost and easy of scoring.

Results: The combined use of the two outlier detection approaches, never tested before using SNP polymorphisms, resulted in the …

Ecological Specialization In A Spatially Structured Population Of The Thermophilic Cyanobacterium Mastigocladus Laminosus, Scott R. Miller, Carin Williams, Aaron L. Strong, Darla Carvey

Biological Sciences Faculty Publications

Laboratory evolution experiments suggest the potential for microbial populations to contribute significant ecological variation to ecosystems, yet the functional importance of genetic diversity within natural populations of microorganisms is largely unknown. Here, we investigated the distribution of genetic and phenotypic variation for a population of the cyanobacterium Mastigocladus laminosus distributed along the temperature gradient of White Creek, Yellowstone NP. A total of 153 laboratory strains were directly isolated from five sites with mean annual temperatures ranging between 39 and 54 C. Genetic characterization at four nitrogen metabolism genes identified 15 closely related lineages in the population sample. These lineages were …

Randomization And In Vivo Selection Reveal A Ggrg Motif Essential For Packaging Human Immunodeficiency Virus Type 2 Rna, Tayyba T. Baig, Jean-Marc Lanchy, J. Stephen Lodmell

Biological Sciences Faculty Publications

The packaging signal (psi) of human immunodeficiency virus type 2 (HIV-2) is present in the 5' noncoding region of RNA and contains a 10-nucleotide palindrome (pal; 5'-392-GGAGUGCUCC) located upstream of the dimerization signal stem-loop 1 (SL1). pal has been shown to be functionally important in vitro and in vivo. We previously showed that the 3' side of pal (GCUCC-3') is involved in base-pairing interactions with a sequence downstream of SL1 to make an extended SL1, which is important for replication in vivo and the regulation of dimerization in vitro. However, the role of the 5' side of pal (5'-GGAGU) was …

Controls Over Leaf Litter Decomposition In Wet Tropical Forests, William R. Wieder, Cory C. Cleveland, Alan R. Townsend

Ecosystem and Conservation Sciences Faculty Publications

Tropical forests play a substantial role in the global carbon (C) cycle and are projected to experience significant changes in climate, highlighting the importance of understanding the factors that control organic matter decomposition in this biome. In the tropics, high temperature and rainfall lead to some of the highest rates of litter decomposition on earth, and given the near-optimal abiotic conditions, litter quality likely exerts disproportionate control over litter decomposition. Yet interactions between litter quality and abiotic variables, most notably precipitation, remain poorly resolved, especially for the wetter end of the tropical forest biome. We assessed the importance of variation …

Assemblage Of Hymenoptera Arriving At Logs Colonized By Ips Pini (Coleoptera: Curculionidae: Scolytinae) And Its Microbial Symbionts In Western Montana, Celia K. Boone, Diana Six, Steven J. Krauth, Kenneth F. Raffa

Ecosystem and Conservation Sciences Faculty Publications

Colonization of a tree by bark beetles and their symbionts creates a new habitat for a diverse assemblage of arthropods, including competing herbivores, xylophages, fungivores, saprophages, predators, and parasitoids. Understanding these assemblages is important for evaluating nontarget effects of various management tactics and for subsequently evaluating how changes in climate, the presence of invasive species, and altered forestry practices and land-use tenure may affect biodiversity. We characterized the assemblage of hymenopterans attracted to logs of ponderosa pine (Pinus ponderosa C. Lawson (Pinaceae)) colonized by the bark beetle Ips pini (Say) and its microbial symbionts. In one experiment, the composition and …

Transport Of Fungal Symbionts By Mountain Pine Beetles, K. P. Bleiker, S. E. Potter, C. R. Lauzon, Diana Six

Ecosystem and Conservation Sciences Faculty Publications

The perpetuation of symbiotic associations between bark beetles (Coleoptera: Curculionidae: Scolytinae) and ophiostomatoid fungi requires the consistent transport of fungi by successive beetle generations to new host trees. We used scanning electron microscopy and culture methods to investigate fungal transport by the mountain pine beetle (MPB), Dendroctonus ponderosae Hopkins. MPB transports its two main fungal associates, Grosmannia clavigera (Robinson-Jeffrey and Davidson) Zipfel, de Beer and Wingfield and Ophiostoma montium (Rumbold) von Arx, in sac-like mycangia on the maxillary cardines as well as on the exoskeleton. Although spores of both species of fungi were observed on MPB exoskeletons, often in pits, …

Emissions From Biomass Burning In The Yucatan, Robert J. Yokelson, J. D. Crounse, P. F. Decarlo, T. Karl, S. P. Urbanski, E. Atlas, T. Campos, Y. Shinozuka, V. Kasputin, A. D. Clarke, A. Weinheimer, D. J. Knapp, D. D. Montzka, J. Holloway, P. Weibring, F. Flocke, W. Zheng, D. Toohey, P. O. Wennberg, C. Wiedinmyer, L. Mauldin, A. Fried, D. Richter, J. Walega, J. L. Jimenez, K. Adachi, P. R. Buseck, S. R. Hall, R. Shetter

Chemistry and Biochemistry Faculty Publications

In March 2006 two instrumented aircraft made the first detailed field measurements of biomass burning (BB) emissions in the Northern Hemisphere tropics as part of the MILAGRO project. The aircraft were the National Center for Atmospheric Research C-130 and a University of Montana/US Forest Service Twin Otter. The initial emissions of up to 49 trace gas or particle species were measured from 20 deforestation and crop residue fires on the Yucatan peninsula. This included two trace gases useful as indicators of BB (HCN and acetonitrile) and several rarely, or never before, measured species: OH, peroxyacetic acid, propanoic acid, hydrogen peroxide, …

Biomass Burning And Urban Air Pollution Over The Central Mexican Plateau, J. D. Crounse, P. F. Decarlo, Donald R. Blake, L. K. Emmons, T. L. Campos, E. C. Apel, A. D. Clarke, A. J. Weinheimer, D. C. Mccabe, Robert J. Yokelson, J. L. Jimenez, P. O. Wennberg

Chemistry and Biochemistry Faculty Publications

Observations during the 2006 dry season of highly elevated concentrations of cyanides in the atmosphere above Mexico City (MC) and the surrounding plains demonstrate that biomass burning (BB) significantly impacted air quality in the region. We find that during the period of our measurements, fires contribute more than half of the organic aerosol mass and submicron aerosol scattering, and one third of the enhancement in benzene, reactive nitrogen, and carbon monoxide in the outflow from the plateau. The combination of biomass burning and anthropogenic emissions will affect ozone chemistry in the MC outflow.

Loop Dynamics Of The Extracellular Domain Of Human Tissue Factor And Activation Of Factor Viia, Agnese S. Minazzo, Reuben C. Darlington, J. B. A. Ross

Chemistry and Biochemistry Faculty Publications

In the crystal structure of the complex between the soluble extracellular domain of tissue factor (sTF) and activesite- inhibited VIIa, residues 91 and 92 in the Pro⁷⁹-Pro⁹² loop of sTF interact with the catalytic domain of VIIa. It is not known, however, whether this loop has a role in allosteric activation of VIIa. Time-resolved fluorescence anisotropy measurements of probes covalently bound to sTF mutants E84C and T121C show that binding uninhibited Factor VIIa affects segmental motions in sTF. Glu⁸⁴ resides in the Pro⁷⁹-Pro⁹² loop, and Thr¹²¹ resides in the turn between the …

Fluctuating Asymmetry In Elk Cervus Elaphus Antlers Is Unrelated To Environmental Conditions In The Greater Yellowstone Ecosystem, Scott L. Eggeman, Mark Hebblewhite, Julie Cunningham, Ken Hamlin

Biological Sciences Faculty Publications

Fluctuating asymmetry (FA) is a measure of the deviation from perfect bilateral symmetry, and has been used across mammals as a reliable indicator of environmental stress during growth and development. Antler size and symmetry can be an indicator of individual fitness and social rank among ungulates such as the North American elk Cervus elaphus. When environmental conditions are favourable, ungulates allocate additional resources to antler development to increase secondary sexual traits and enhance reproduction. We tested whether there was an appreciable change in antler length and the number of points as extreme climatic conditions (e.g. heavy snow and drought) …

Function, Regulation, And Transcriptional Organization Of The Hemin Utilization Locus Of Bartonella Quintana, Nermi L. Parrow, Jasmin Abbott, Amanda R. Lockwood, James M. Battisti, Michael F. Minnick

Biological Sciences Faculty Publications

Bartonella quintana is a gram-negative agent of trench fever, chronic bacteremia, endocarditis, and bacillary angiomatosis in humans. B. quintana has the highest known hemin requirement among bacteria, but the mechanisms of hemin acquisition are poorly defined. Genomic analyses revealed a potential locus dedicated to hemin utilization (hut) encoding a putative hemin receptor, HutA; a TonB-like energy transducer; an ABC transport system comprised of three proteins, HutB, HutC, and HmuV; and a hemin degradation/storage enzyme, HemS. Complementation analyses with Escherichia coli hemA show that HutA functions as a hemin receptor, and complementation analyses with E. coli hemA tonB indicate that HutA …

Arbuscular Mycorrhizal Fungi: Factors Affecting Soil Organic Matter Storage, Carl Lee Rosier

Graduate Student Theses, Dissertations, & Professional Papers

Arbuscular mycorrhizal fungi (AMF) are soil fungi forming symbiotic associations with majority of land plants. AMF alter soil organic matter (SOM) directly through stabilization of soil aggregates and indirectly providing a path in which plant fixed C02 is transferred below-ground. Understanding contributions of AMF to SOM via protein production and stabilization of soil aggregates will greatly aid our understanding of soil carbon sequestration, nutrient cycling and mitigation of soil erosion. The work presented in chapter 2 challenges the glomalin extraction process and assesses the accuracy of the Bradford and monoclonal-antibody ELISA detection methods. My results clarify the contribution of glomalin …