Life Sciences Commons^™

Short Term Effectiveness Of High Density Large Woody Debris In Asotin Creek As A Cheap And Cheerful Restoration Action, Reid Camp

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In response to human impacts, river restoration and rehabilitation actions have become a priority in the United States. In the Pacific Northwest, most restoration actions are focused on repairing degraded freshwater habitat to increase or improve Pacific salmonid production. However, traditional river restoration actions remained largely unchanged for over 100 years despite a lack of definitive evidence that the actions were effective. More recently, there has been a surge in process-based restoration actions, which aim to reestablish the physical and biological processes that maintain fluvial and floodplain environments by targeting the root causes of degradation in a watershed. Cheap and …

Examining The Association Between Children's Fruit And Vegetable Intake At And Away From School, Velarie Yaa Ankrah Ansu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Several school-based interventions aimed at increasing fruit and vegetables (FV) intake among children have demonstrated success in short-term interventions. The Fit Game is a school-based intervention aimed at encouraging children to consume increasing amounts of FV during a game, which is a narrative. Just as children are being encouraged to eat FV at school, so is it equally important for them to eat FV at home. Parents strongly influence the amount of FV children consume at home. The aim of this thesis is to examine associations between factors that influence consumption of fruits and vegetables at and away from school …

A Century Of Geomorphic Change Of The San Rafael River And Implications For River Rehabilitation, Stephen T. Fortney

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Suspended-load rivers are subject to rapid geomorphic changes. In particular during the Holocene Epoch, arroyos of the Colorado Plateau experienced several periods of rapid erosion and aggradation. The most recent period of entrenchment occurred around the turn of the 20th century. The mechanisms responsible for the modern period of aggradation that has followed the most recent period of entrenchment have not been well documented. The research presented in this thesis reveals the mechanisms responsible for modern alluviation of the San Rafael River, which drains the Colorado Plateau

The lower 87 km of the San Rafael River, which enters the Green …

Ecology, Behavior And Taxonomy Of Anurans From Brazil's Atlantic Forest, Rodrigio Barbosa Ferreira

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Anura is a diverse group with more than 7382 species described, which represents 88% of the species belonging to the Class Amphibia. Anurans are among the first organisms to be affected by environmental stressors, so when they show decline in the wild, it is a warning to other species, including humans. It is alarming that one-third of the world’s anurans are facing extinction. Following the same trend, a substantive portion of the 988 recognized species of the Atlantic Forest have suffered population declines and local extinctions, attributed primarily to habitat changes.

Despite the unique life history characteristics that make amphibians …

Matching Watershed And Otolith Chemistry To Establish Natal Origin Of An Endangered Desert Lake Sucker, Deanna Strohm

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Like many native endemic desert freshwater fish species, the June Sucker (Chasmistes liorus) is currently listed as endangered. Managers have increasingly turned to habitat restoration as a key component to recovery plans. For endangered species, one of the primary outcomes of habitat restoration is that it should result in successful reproduction and recruitment of individuals into the adult population. Confirmation of natural recruitment as a function of habitat restoration can only be achieved by establishing natal origins.

Recent research has proven the validity of otolith microchemistry, a technique that analyzes small quantities of elements, to trace potamodromous fish …

Modeling The Ecological Consequences Of Visitor Behavior In Off-Trail Areas Of Dispersed Recreation Use, Ashley L. D'Antonio

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Parks and protected areas are often created to protect important social, ecological, or cultural resources from impairment. In the United States, a large majority of these parks and protected areas are also public land where recreational activities such as hiking or scenic driving are allowed. Managers of many parks and protected areas must therefore try to protect resources while also allowing for recreation use that may put these resources at risk for damage. The field of recreation ecology is interested in understanding how recreation use in parks and protected areas can sometimes cause ecological impacts to vegetation, soil, wildlife, water, …

Virulence Evolution Of Fungal Pathogens In Social And Solitary Bees With An Emphasis On Multiple Infections, Ellen G. Klinger

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The health of pollinators, especially bees, is of the utmost importance to success of many agricultural ecosystems. Microorganisms can cause diseases in bees; such microbes are pathogenic. The ability of a pathogen to cause harm to its host (such as a bee) is termed its virulence. Studying the evolution of different levels of virulence can lead researchers to a better understanding of pathogens, and potentially predict how much harm a pathogen can cause in the future. We studied the evolution of virulence levels for a fungal disease of bees. This group of fungi is composed of 28 species, and some …

Participant Perceptions Of Range Rider Programs Used To Mitigate Wolf-Livestock Conflicts In The Western United States, Molly Parks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Range Rider Programs (RRPs) are one example of a proactive non-lethal tool that has been implemented in western United States to mitigate gray wolf (Canis lupus) and livestock conflicts. Because RRPs are an emerging non-lethal tool that little is known about, I selected a qualitative research approach to examine participant perceptions to further contemporary understanding of how these efforts are implemented and potential benefits. I surveyed 51 participants from 17 Range Rider Programs (RRPs) in Montana, Washington, and Oregon to determine participant perceptions regarding effectiveness of RRPs as a non-lethal approach to mitigate wolf-conflicts.

I developed a RRPs typology based …

Structural And Compositional Patterns In Forest Communities In The Intermountain West Across Multiple Scales, Marcella A. Windmuller-Campione

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The United States Department of Agriculture (USDA) strives to use science-based research to both protect and enhance the management of natural resources. From this overarching goal, the USDA has a specific objective to protect the health and sustainability of forest and rangeland ecosystems. Based on this specific objective, an Advisory Board of natural resource scientists within the Quinney College of Natural Resources (QCNR) was awarded a National Institute of Food and Agricultural (NIFA) grant to train two PhD and two MS students. Their research would focus on managing for resilient forest ecosystem in the Intermountain West.

With input from the …

The Impact Of The Updated National School Lunch Program Meal Standards On Fruit And Vegetable Consumption Among Elementary School Students In Cache County Utah, Jillian C. Fox

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Due to the short time the updated National School Lunch Program standards have been in place since fall of 2012, few research studies have explored what effect these new standards have had on fruit and vegetable (F/V) consumption, particularly among elementary school students. Because the new standards require schools to offer students more F/V than before, researchers are interested to know if F/V consumption has indeed increased.

The participants in the study were enrolled in a program to motivate students to eat more F/V – the Food Dudes program. The results of the data analysis found that most students, regardless …

Economic Assessment Of Organic, Eco-Friendly, And Conventional Peach Production Methods In Northern Utah, Trevor D. Knudsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Fruit producers in Northern Utah face several challenges to their production, urbanization, decreased availability of agricultural land, and competition from domestic producers and imports. As consumers are willing to pay premiums for foods differentiated by production method, such as eco-friendly and organic, conversion to these methods may increase the profitability of fruit growing operations.

This study found that consumers in Northern Utah are willing to pay a premium for peaches grown using organic and eco-friendly production practices over conventionally grown peaches. The study also found that of the three methods of peach production examined (conventional, eco-friendly, and organic), organic had …

Beef Average Daily Gain And Enteric Methane Emissions On Birdsfoot Trefoil, Cicer Milkvetch And Meadow Brome Pastures, Lance R. Pitcher

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Conventional production of meat products from ruminant animals in the United States requires inputs including the cultivation and nitrogen fertilization of annual grains such as corn and barley, and transportation of cattle and grain to feedlots. Consumers have concerns about the impact of feedlot conditions on animal health, and about the implications of pharmaceutical inputs such as growth hormones and antibiotics on the environment and human health. These concerns have led to a growing interest in pasture-finished meat production by consumers. Such smaller-scale livestock production systems can be healthier and lower-stress for animals, are integrated into local food systems and …

Investigation Of Sugar/Polyols As Weakly Interacting Cosolvents And Their Influence On Hardening Of High-Protein Nutrition Bars, Sami Kadhim Hassan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Western Dairy Center (WDC) at Utah State University demonstrated opportunities to improve the quality of high-protein snack foods that becoming more prevalent in western diets. Previously, such high-protein nutrition bars became too hard during storage and they had a limited shelf life, resulting in disappointment by consumers or loss of product as older products needed to be discarded.

With sponsorship as a doctoral student by the Iraq Ministry of Higher Education and Scientific Research and in conjunction with WDC researchers, an investigation was conducted into the chemistry of high-protein nutrition bars and how the various components (protein, carbohydrate and …

Binding Interactions Of (R)- And (S)-Hydroxypropyl-Com Dehydrogenases And The Zinc Knuckle Proteins Air1 And Air2, Jeremy W. Bakelar

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A thorough understanding of protein function requires knowledge of how proteins interact with their substrates and with other proteins. The work entailed in this dissertation describes the binding interactions of proteins from two different model systems: (1) the dehydrogenase enzymes R- and S-HPCDH and (2) the zinc knuckle proteins Air1 and Air2.

R- and S-HPCDH are highly similar enzymes (42% identical) that function in a unique metabolic pathway found in the soil bacterium Xanthobacter autotrophicus. The bacterium produces R- and S-HPCDH simultaneously to facilitate the transformation of two different forms of the organic …

Effects Of Beef Finishing Diets And Muscle Type On Meat Quality, Fatty Acids And Volatile Compounds, Arkopriya Chail

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Consumer evaluation, proximate data, Warner-Bratzler shear force (WBSF), fatty acid (FA) composition and volatile compounds were analyzed from the ribeye steaks (LT) finished on conventional feedlot (FL) and forages, including a perennial legume, birdsfoot trefoil (BFT; Lotus corniculatus), and a grass, meadow brome (Bromus riparius Rehmann, Grass). Representative retail forage (USDA Certified Organic Grass-fed, COGF) and conventional beef (USDA Top Choice, TC) were investigated (n = 6) for LT. Additionally, the effects of diet on round (GM) and chuck (TB) muscles FL, BFT and Grass were explored. Forage-finished beef was less liked in most of the affected …

Effects Of Blue And Green Light On Plant Growth And Development At Low And High Photosynthetic Photon Flux, Michael Chase Snowden

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Research in photobiology dates back over 200 years with studies using primitive light sources. This early research identified photoreceptors and action spectra for specific regions of the light spectrum that are paramount for photosynthesis as well as growth and development that are still topics of interest today.

Photobiological research has become an area of increasing interest since the introduction of light-emitting diodes which allow for evaluating endless combinations of light spectra. Red light-light emitting diodes were the first to be introduced that had an electrical efficiency comparable to existing light sources. The research found that red light alone was not …

Groundwater And Surface Water Contributions To Metals Loading In Bayhorse Creek At The Abandoned Ramshorn Mine Site Near Bayhorse, Idaho, Hannah L. Mcdonough

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The U.S. Forest Service (USFS) and the Idaho Department of Environmental Quality (IDEQ) purchased property encompassing the abandoned Ramshorn mine to develop a state park. Because the abandoned copper-lead-silver mine was a potential hazard to the local creek and sediment, the IDEQ conducted several assessments to identify environmental risks. Between 2003 and 2006, the IDEQ completed a number of basic soil and water investigations in the location of mine waste. The IDEQ received investigation and cleanup funds through the EPA Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) program.

The USFS allocated $10,000 toward a two-year master’s level project to …

Water Decision-Making Under Uncertainty, Augustina Yaa Oye Odame

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This dissertation is made up of three separate studies under the unifying theme of “Water Decision-Making under Uncertainty.” The first study analyzed a farmer’s decision to invest in a more efficient irrigation system given uncertainty about future water supplies and his post-investment efficiency. It found the price at which farmers would no longer produce to be a bigger consideration in irrigation investment than previously thought. It also found support for a careful identification and consideration of all significant sources of uncertainty in order to create better policy incentives for irrigation technology investments.

The second study extended the first to allow …

Contribution Of A Novel Obligatory Heterofermentative Nonstarter Lactobacillus Species To Late Gassy Defect In Cheddar Cheese, Fatih Ortakci

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Cheddar cheese is usually aged for 3 to 24 months at temperatures ranging from 5 to 13°C. Ripening at elevated temperatures hastens the process, reducing manufacturing costs and enabling manufacturers to bring the product to market more quickly. However, cheeses ripened at elevated temperatures sometimes exhibit late gassy defect that may cause a textural defect, commonly referred to as slit defect. This results in crumbling and
losses during cutting of as much as 50%, making slit defect a major economic issue in the cheese industry. Moreover, loose or blown cheese packages are unsuitable for sale in the supermarkets due to …

Validation Of A Noninvasive Technique For The Assessment Of Physiological Stress In Coyotes (Canis Latrans), Erika T. Stevenson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Quantifying physiological stress may aid in a better understanding of how animals survive various environmental conditions. One noninvasive technique for assessing physiological stress in animals is to extract steroid hormones from fecal samples. This technique has the potential to aid in wildlife conservation by providing a better understanding of behavior and welfare for a variety of species. The objectives of the study were to (1) determine responses in plasma and fecal steroid hormone concentrations for coyotes (Canis latrans), (2) determine which steroid hormone (cortisol or corticosterone) was better for examining physiological stress responses for coyotes, and (3) determine …

Postharvest Degradation Of Microalgae: Effect Of Temperature And Water Activity, Jacob A. Nelson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Though usually a nuisance in swimming pools and ponds, algae has the potential to be a valuable commodity for use as food and fuel. But before algae butter and biofuel become commonplace, issues with harvesting and storing this new crop need to be overcome. Though there has been ample research into how to grow and use algae, scientists have spent little time figuring out what to do after you pull it out of the water and before you eat it (or turn it into biodiesel). Algae, like all food products, starts to spoil as soon as it is harvested.

This …

Improvement Of Nutrient Utilization Efficiency, Ruminal Fermentation And Lactational Performance Of Dairy Cows By Feeding Birdsfoot Trefoil, Rachael G. Christensen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Condensed tannins (CT) are compounds that have shown potential to reduce the environmental impact of dairy farming waste products. In two live animal studies and a continuous culture study, it was hypothesized that feeding birdsfoot trefoil (Lotus corniculatus, BFT), a CT-containing legume, would improve nutrient utilization, milk, and component yield of dairy cows compared with feeding alfalfa hay or grass pasture in two studies, while feeding BFT forage would decrease methane production and improve rumen fermentation in addition to concentrate supplementation was the hypothesis of the third study. Reduction in milk urea nitrogen (MUN) and …

Factors Contributing To The Conservation Of Phacelia Submutica (Boraginaceae), A Threatened Species In Western Colorado: Reproductive Biology And Seed Ecology, Alicia M. Langton

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Conservation and recovery plans for rare species require biological and ecological information to discern how they may be susceptible to human disturbances. Phacelia submutica is a threatened annual species in western Colorado. Human activities including energy development, recreation, and livestock grazing are occurring within the species’ range. To provide conservation practitioners with a scientific basis for management, this research aimed to elucidate elements of the species’ ecology. Chapter 2 describes the reproductive biology of P. submutica. Potential insect pollinators were not observed during two years of observations. Floral traits and development ensure self-pollination and reduce the likelihood that insects …

The Effects Of Social Norms Feedback On Fruit And Vegetable Consumption And Skin Carotenoids Among College Students, Troy A. Bailey

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Fruit and vegetable consumption, which has been shown to have a protective effect against chronic diseases, often decreases during the first few years of college. Implementing public health interventions to improve consumption of these foods may be time-consuming, costly and burdensome. The aim of this study was to determine if a social norms intervention, examining the effects of normative and manipulated feedback of participants’ carotenoid scores compared to a no-norm control, could increase fruit and vegetable consumption among college students. Such a strategy could be a cost-effective method for promoting healthy diets in this population.

While self-reported increases in fruit …

Ecology And Behavior Of Coyotes In Urban Environments At Varying Spatial Scales, Sharon A. Poessel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As urban development continues to increase throughout the world, wildlife species, including carnivores, will be affected either positively or negatively. Coyotes (Canis latrans) have learned to efficiently adapt to highly developed areas, and conflicts between humans and coyotes, such as attacks on humans and pets, are increasing. We conducted three studies of urban coyotes to understand the factors affecting habitat use by coyotes so that wildlife managers can reduce human-coyote conflicts. Each study was conducted at progressively larger scales, with the first study at a fine scale using captive coyotes, the second study at a local scale in the …

Scalable Bio-Production Of High Value Products In Bacteria, Yukie Kawasaki

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Natural products are structurally and chemically diverse bioactive compounds produced by living organisms. The complex structures of natural products are often difficult to duplicate synthetically and thus industrial production of natural products most often depends on use of the host organisms. In this dissertation research, scalable production of natural products was pursued in bacterial platforms.

Biliverdin IXα is a natural anti-inflammatory compound which is emerging as a potent cytoprotectant in the medical field. Syringomycin E is a natural fungicide expected to be an effective agrofungicide in organic farming. Both biliverdin IXα and syringomycin E have limited supplies in the market. …

Salt And The Rough-Skinned Newt (Taricha Granulosa): Evolutionary Investigations Of Local Adaptation To An Anthropogenic And Natural Stressor, Gareth Rowland Hopkins

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Amphibians are osmotically-challenged due to their highly permeable skin and egg membranes. As such, biologists have mostly ignored their occurrence in saline habitats. The goal of this dissertation was to investigate the ability of amphibians to adapt to inhabit these osmotically-stressful environments. As freshwater resources are increasingly salinized due to a combination of anthropogenic and natural stressors, including road-deicing salt application, coastal storm events, and sea-level rise, it is important to understand the abilities and constraints of sensitive organisms, like amphibians, to persist in these environments. I began by exploring what is known about amphibians inhabiting saline habitats around the …

Annotation Tools For Multivariate Gene Set Testing Of Non-Model Organisms, Russell K. Banks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Microarray chip technology enables researchers to obtain measures of gene activity for essentially all genes in an organism. After grouping genes into biologically meaningful sets, researchers employ certain statistical tests to identify which gene sets (biological processes) show different levels of activity across different treatment groups. The idea is to identify which biological processes are significantly affected by a certain treatment/condition in a given organism.

Non-model organisms (such as sheep) are not widely studied so gene set membership information is not always readily accessible. This thesis work utilizes two microarray studies involving sheep to provide researchers with working examples of …

Microhabitat Selection By Greater Sage-Grouse Hens In Southern Wyoming, Scott T. Mabray

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Greater sage-grouse (Centrocercus urophasianus) populations have been declining throughout the western United States over the past 3 decades. Habitat loss within the range sagebrush steppe ecosystem is a major factor leading to sage-grouse population decline. Understanding the use of microhabitats by hen sage-grouse may provide data that will allow managers to reduce the decline in the sage-grouse population.

My objective was to determine the factors lead to site selection by hen sage-grouse hens. This was accomplished by addressing several questions regarding the interactions of habitat selection and predator avoidance among sage-grouse hens. I examined if (1) sites occupied …

Growth Performance, Ruminal Fermentation Characteristics, And Economic Returns Of Growing Beef Steers Fed Brown Midrib, Corn, Silage-Based Diet, Christopher Scott Saunders

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Sustainable beef production is extremely important to the beef cattle industry. Sustainability influences the environment, overall profits, and public concerns. One
factor that influences sustainability is the composition of cattle feed. This study compared conventional corn silage (CCS), which is most commonly used in beef steer feed, to brown midrib corn silage (BMR). Steers fed the two different diets were compared to determine differences in the areas of growth/animal performance, ruminal fermentation (digestion), and economic returns. The study included 24 beef steers randomly assigned to one of two treatment groups. Treatment groups were a total mixed feed ration that included …