Life Sciences Commons^™

Can The Fut 2 Gene Variant Have An Effect On The Body Weight Of Patients Undergoing Bariatric Surgery? - Preliminary, Exploratory Study, Natalia Komorniak, Alexandra Martynova-Van Kley, Armen Nalian, Wiktoria Wardziukiewicz, Karolina Skoniecznaa-Zydecka, Daniel Styburski, Joanna Palma, Bartosz Kowalewski, Krzysztof Kaseja, Ewa Stachowska

Faculty Publications

Background: The FUT2 gene (Se gene) encoding the enzyme α-1,2-L-fucosyltransferase 2 seems to have a significant effect on the number and type of bacteria colonizing the intestines. Methods: In a group of 19 patients after bariatric surgery, the polymorphism (rs601338) of FUT2 gene was analyzed in combination with body mass reduction, intestinal microbiome (16S RNA sequencing), and short chain fatty acids (SCFA) measurements in stools. Results: Among the secretors (Se/Se polymorphism of the FUT2 gene rs601338, carriers of GG variant), correlations between waist-hip ratio (WHR) and propionate content and an increase in Prevotella, Escherichia, Shigella, and Bacteroides were observed. On …

Ground Contact Time Imbalances Strongly Related To Impaired Running Economy, Dustin P. Joubert, Nicholas A. Guerra, Eric J. Jones, Erica G. Knowles, Aaron D. Piper

Faculty Publications

Running economy (RE) is defined as the oxygen consumption (VO2) or caloric unit cost required to move at a specific velocity and is an important performance marker. Ground contact time (GCT) has been associated with RE; however, it has not been established how GCT imbalances between feet impact RE. Purpose: Determine the relationship between cadence, GCT, and GCT imbalances and RE. Methods: 11 NCAA Division I distance runners (7 male) completed a graded exercise test on a treadmill to determine lactate threshold (LT) and VO2max. Body composition was also assessed via DEXA. Subjects ran with a heart rate monitor capable …

Comparison Of Post-Activation Potentiating Stimuli On Jump And Sprint Performance, Aaron D. Piper, Dustin P. Joubert, Eric J. Jones, Malcom T. Whitehead

Faculty Publications

Post-activation potentiation (PAP) is a phenomenon characterized by improved muscle performance based on the previous contractile activity of the muscle. The purpose of this study was to determine the effect of different potentiating stimuli on jump and sprint performance in 13 resistance trained, college-aged men and women. After determining back squat 1 repetition max, subjects returned for testing on separate days to complete one of four interventions (dynamic resistance, weighted plyometric, isometric, or control) in a randomized order. A standardized warmup was performed, followed by a baseline countermovement jump (CMJ) and 20m sprint. Following warm-up and baseline measurements, subjects performed …

A Comparison Of The Trojan Y Chromosome Strategy To Harvesting Models For Eradication Of Non-Native Species, Jingjing Lyu, Pamela J. Schofield, Kristen M. Reaver, Matthew Beauregard, Rana D. Parshad

Faculty Publications

The Trojan Y Chromosome Strategy (TYC) is a promising eradication method for biological control of non-native species. The strategy works by manipulating the sex ratio of a population through the introduction of supermales that guarantee male offspring. In the current manuscript, we compare the TYC method with a pure harvesting strategy. We also analyze a hybrid harvesting model that mirrors the TYC strategy. The dynamic analysis leads to results on stability of solutions and bifurcations of the model. Several conclusions about the different strategies are established via optimal control methods. In particular, the results affirm that either a pure harvesting …

Large And Small Data Blow-Up Solutions In The Trojan Y Chromosome Model, Rana D. Parshad, Matthew Beauregard, Eric M. Takyi, Thomas Griffin, Landrey Bobo

Faculty Publications

The Trojan Y Chromosome Strategy (TYC) is an extremely well investigated biological control method for controlling invasive populations with an XX-XY sex determinism. In [35, 36] various dynamical properties of the system are analyzed, including well posedness, boundedness of solutions, and conditions for extinction or recovery. These results are derived under the assumption of positive solutions. In the current manuscript, we show that if the introduction rate of trojan fish is zero, under certain large data assumptions, negative solutions are possible for the male population, which in turn can lead to finite time blow-up in the female and male populations. …

Effectiveness Of Plant Species For Removing Atmospheric Ammonia, Marife B. Anunciado, Sheryll B. Jerez, Hans Williams, Joey Bray, Dean W. Coble, Rena Saito

Faculty Publications

Six plant species of Yaupon, Eastern red cedar, American holly, Arizona cypress, Arborvitae and Roughleaf dogwood were utilized to determine their effectiveness in the removal of atmospheric ammonia. All species were exposed to three ammonia levels (1, 5 and 10 ppm) in an environmental chamber. Foliar ammonia content was quantified using an enzymatic technique. The effects of exposure to ammonia on the physiological responses (e.g. photosynthetic activity, stomatal conductance, and transpiration rate) of plants in ambient condition were also determined using an open design photosynthetic gas exchange system. Foliar ammonia content was significantly different among the six plant species (p<0.0001) with Eastern red cedar exhibiting the highest content. The physiological responses differed significantly depending on the plant species and the ammonia treatment level. The photosynthetic response of plants to the presence of ammonia was mixed. At low exposure level, all species except Arborvitae had decreased photosynthetic activity, reducing by as much as 44.5% for Yaupon. At the highest concentration, however, Yaupon’s photosynthetic activity improved by about 10%. Exposure to ammonia caused increased stomatal conductance and transpiration rate on American holly and Arizona cypress, making them more susceptible to water loss.

Move It Or Lose It: Interspecific Variation In Risk Response Of Pond-Breeding Anurans, Philip Matich, Christopher M. Schalk

Faculty Publications

Changes in behavior are often the proximate response of animals to human disturbance, with variability in tolerance levels leading some species to exhibit striking shifts in life history, fitness, and/or survival. Thus, elucidating the effects of disturbance on animal behavior, and how this varies among taxonomically similar species with inherently different behaviors and life histories is of value for management and conservation. We evaluated the risk response of three anuran species—southern leopard frog (Lithobates sphenocephalus), Blanchard’s cricket frog (Acris blanchardi), and green tree frog (Hyla cinerea)—to determine how differences in microhabitat use (arboreal vs …

Positional Precision Analysis Of Orthomosaics Derived From Drone Captured Aerial Imagery, I-Kuai Hung, Daniel Unger, David Kulhavy, Yanli Zhang

Faculty Publications

The advancement of drones has revolutionized the production of aerial imagery. Using a drone with its associated flight control and image processing applications, a high resolution orthorectified mosaic from multiple individual aerial images can be produced within just a few hours. However, the positional precision and accuracy of any orthomosaic produced should not be overlooked. In this project, we flew a DJI Phantom drone once a month over a seven-month period over Oak Grove Cemetery in Nacogdoches, Texas, USA resulting in seven orthomosaics of the same location. We identified 30 ground control points (GCPs) based on permanent features in the …

Weed Control And Overstory Reduction Improve Survival And Growth Of Under‐Planted Oak And Hickory Seedlings, Luke B. Oliver, Jeremy Stovall, Chris E. Comer, Hans Williams, Matt E. Symmank

Faculty Publications

Weed control and overstory reduction are important silvicultural treatments for improving survival and growth of under‐planted oak and hickory seedlings. Mast‐producing trees in the bottomland forests of the blackland prairie and Post Oak Savannah ecoregions of Texas have declined in abundance. Oaks and hickories have been replaced by more shade‐tolerant species, including green ash (Fraxinus pennsylvanica Marshall) and sugarberry (Celtis laevigata Willd.), which do not produce significant hard mast for priority wildlife species. A split‐plot experiment design was installed on three sites at Richland Creek Wildlife Management Area in Freestone County, Texas, studying the effects of canopy coverage …

Variation In Carbon Concentrations And Allocations Among Larix Olgensis Populations Growing In Three Field Environments, Jiang Ying, Yuhi Weng, Brian P. Oswald, Hanguo Zhang

Faculty Publications

Key message Variation in carbon concentration among Larix olgensis A. Henry provenances and tree tissues was significant, suggesting importance of such variation to carbon stock calculation. Provenance variation in carbon allocation was only significant in allocations to some tissues, including stem wood, and was strongly site-specific. Some allocation patterns correlated significantly with provenance growth and were related to geographic/climatic variables at the provenance origins.

Context Understanding variation in carbon concentrations and allocations to tree tissues among genetic entries is important for assessing carbon sequestration and understanding differential growth rates among the entries. However, this topic is poorly understood, in particular …

Correlates Of Snake Entanglement In Erosion Control Blankets, Sarah E. Ebert, Kasey L. Jobe, Christopher M. Schalk, Daniel Saenz, Cory K. Adams, Christopher E. Comer

Faculty Publications

In road construction projects across the United States, erosion control methods (e.g., erosion control blankets [ECBs]), are mandated to stimulate seedbed regeneration and prevent soil loss. Previous reports have suggested that snakes are vulnerable to entanglement in ECBs. We conducted a literature review, field surveys, and an entanglement experiment to examine what factors increase a snake’s risk of ECB entanglement. Our literature review produced reports of 175 reptiles entangled in mesh products, 89.1% of which were snakes, with 43.6% of snake entanglements occurring in erosion control products. During our field surveys, we found 10 entangled snakes (n = 2 alive; …

Temporal Changes In Fruit Production Between Recurrent Prescribed Burns In Pine Woodlands Of The Ouachita Mountains, Tamara B. Wood, Christopher E. Comer, Roger W. Perry, Brian P. Oswald

Faculty Publications

The use of prescribed fire is integral to the restoration of open woodlands and savannas, including shortleaf pine (Pinus echinata) woodlands in the Ouachita Mountains of Oklahoma and Arkansas. Fire offers many potential benefits to numerous wildlife; however, short-term implications for understory fruit production are not fully understood, especially in stands subjected to frequent, recurrent burns. We examined the effects of dormant season prescribed burns on woody fruit production (kg ha−1) and fruit producing vegetative cover in the understory of restored pine woodlands. We inventoried 32 stands during four temporal periods after dormant season prescribed fires: 1, 2, …

Individual Tree And Stand-Level Carbon And Nutrient Contents Across One Rotation Of Loblolly Pine Plantations On A Reclaimed Surface Mine, Hannah Z. Angel, Jeremy S. Priest, Jeremy P. Stovall, Brian P. Oswald, Hans M. Williams

Faculty Publications

While reclaimed loblolly pine (Pinus taeda L.) plantations in east Texas, USA have demonstrated similar aboveground productivity levels relative to unmined forests, there is interest in assessing carbon (C) and nutrients in aboveground components of reclaimed trees. Numerous studies have previously documented aboveground biomass, C, and nutrient contents in loblolly pine plantations; however, similar data have not been collected on mined lands. We investigated C, N, P, K, Ca, and Mg aboveground contents for first-rotation loblolly pine growing on reclaimed mined lands in the Gulf Coastal Plain over a 32-year chronosequence and correlated elemental rates to stand age, stem …

Student Led Area Measurement Assessments Using Virtual Globes And Pictometry Web-Based Interface Within An Undergraduate Spatial Science Curriculum, David Kulhavy, I-Kuai Hung, Daniel Unger, Yanli Zhang

Faculty Publications

The use of Virtual Globes and Pictometry continues to expand and develop in undergraduate spatial science education. Spatial science undergraduates measured the area of 30 rectangles on the earth’s surface and compared them to Pictometry hyperspectral imagery measurements within a web-based interface and the Google Earth interface compared to ArcGIS Explorer, Map Developers and ArcMap using the ArcMap 10.5.2 interface. An analysis of variance of the absolute mean area errors (p-value of 0.009271) concluded the accuracy of the five area measurements were statistically different at the 95% confidence interval. A Tukey pair-wise test found that the Pictometry and Google Earth …

Forest Measurements, Yuhi Weng

Faculty Publications

Forest measurements, one of the cornerstones in the foundation of forestry, is the art and science of providing the quantitative information about trees and forest stands necessary for forest management, planning, and research. The updated edition (sixth edition) of this longstanding classic textbook, Forest Measurements, provides new and complete coverage of conventional and current measurement practices and technological applications that link the role of forest measurements with management of forest resources.

Resin Flow In Loblolly And Shortleaf Pines Used By Red-Cockaded Woodpeckers, David L. Kulhavy, W G. Ross, J H. Sun, Daniel Unger, I-Kuai Hung, Richard N. Conner

Faculty Publications

We measured resin flow in loblolly (Pinus taeda L.) and shortleaf (Pinus echinata Mill.) pines in stands used by red-cockaded woodpecker, Picoides borealis (Vieillot), in the Angelina and Davy Crockett National Forests in eastern Texas. We also measured resin flow in a mature loblolly pine stand not used by the woodpeckers. Resin flow varied by study area, species, and stand position. In woodpecker stands, pines experiencing low levels of competition seemed better able to tolerate the continual resin drainage associated with red-cockaded woodpecker resin well pecking. In the Angelina National Forest, all new cavity trees excavated during the study were …

Distribution Of Contaminants In The Environment And Wildlife Habitat Use: A Case Study With Lead And Waterfowl On The Upper Texas Coast, Brian Kearns, Stephen Mcdowell, Jena A. Moon, Elizabeth Rigby, Warren C. Conway, David A. Haukos

Faculty Publications

The magnitude and distribution of lead contamination remain unknown in wetland systems. Anthropogenic deposition of lead may be contributing to negative population-level effects in waterfowl and other organisms that depend on dynamic wetland habitats, particularly if they are unable to detect and differentiate levels of environmental contamination by lead. Detection of lead and behavioral response to elevated lead levels by waterfowl is poorly understood, but necessary to characterize the risk of lead-contaminated habitats. We measured the relationship between lead contamination of wetland soils and habitat use by mottled ducks (Anas fulvigula) on the Upper Texas Coast, USA. Mottled …

A New Site Index Model For Intensively Managed Loblolly Pine (Pinus Taeda) Plantations In The West Gulf Coastal Plain, Kynda R. Trim, Dean W. Coble, Yuhi Weng, Jeremy P. Stovall, I-Kuai Hung

Faculty Publications

Site index (SI) estimation for loblolly pine (Pinus taeda L.) plantations is important for the successful management of this important commercial tree species in the West Gulf Coastal Plain of the United States. This study evaluated various SI models for intensively managed loblolly plantations in the West Gulf Coastal Plain using data collected from permanent plots installed in intensively managed loblolly pine plantations across east Texas and western Louisiana. Six commonly used SI models (Cieszewski GADA model, both Chapman-Richards ADA and GADA models, both Schumacher ADA and GADA models, and McDill-Amateis GADA model) were fit to the data and compared. …

Associations Between Residual Feed Intake And Apparent Nutrient Digestibility, In Vitro Methane-Producing Activity, And Volatile Fatty Acid Concentrations In Growing Beef Cattle, Jocelyn R. Johnson, Gordon E. Carstens, Wimberly K. Krueger, Phillip A. Lancaster, Erin G. Brown, Luis O. Tedeschi, Robin C. Anderson, Kristen A. Johnson, Arieh Brosh

Faculty Publications

The objectives of this study were to examine the relationship between residual feed intake (RFI) and DM and nutrient digestibility, in vitro methane production, and volatile fatty acid (VFA) concentrations in growing beef cattle. Residual feed intake was measured in growing Santa Gertrudis steers (Study 1; n = 57; initial BW = 291.1 ± 33.8 kg) and Brangus heifers (Study 2; n = 468; initial BW = 271.4 ± 26.1 kg) fed a high-roughage-based diet (ME = 2.1 Mcal/kg DM) for 70 d in a Calan-gate feeding barn. Animals were ranked by RFI based on performance and feed intake measured …

Diversity And Shifts Of The Bacterial Community Associated With Baikal Sponge Mass Mortalities, Sergei Belikov, Natalia Belkova, Tatiana Butina, Lubov Chernogor, Alexandra Martynova-Van Kley, Armen Nalian, Colin Rorex, Igor Khanaev, Olga Maikova, Sergey Feranchuk

Faculty Publications

The disease of freshwater sponges was first discovered in 2011, when pink samples were found in the Central Basin of Lake Baikal. Subsequently, the visible signs of the disease have changed, and now sponges appear with various symptoms of damage to the body, such as discoloration, tissue necrosis, the formation of brown patches and dirty-purple biofilms on some branches. These signs of the disease are accompanied by the mass death of sponges. We identified differences in microbiomes by sequencing 16S rRNA genes and found changes in the consortium of microorganisms of freshwater Baikal sponges. We found that the observed imbalance …

Structural And Functional Determinants Of Rodent And Human Surfactant Protein A: A Synthesis Of Binding And Computational Data, Armen Nalian, Todd M. Umstead, Ching-Hui Yang, Patricia Silveyra, Neal J. Thomas, Joanna Floros, Francis X. Mccormack, Zissis C. Chroneos

Faculty Publications

Surfactant protein A (SP-A) provides surfactant stability, first line host defense, and lung homeostasis by binding surfactant phospholipids, pathogens, alveolar macrophages (AMs), and epithelial cells. Non-primates express one SP-A protein whereas humans express two: SP-A1 and SP-A2 with core intra- and inter-species differences in the collagen-like domain. Here, we used macrophages and solid phase binding assays to discern structural correlates of rat (r) and human (h) SP-A function. Binding assays using recombinant rSP-A expressed in insect cells showed that lack of proline hydroxylation, truncations of amino-terminal oligomerization domains, and site-directed serine (S) or alanine (A) mutagenesis of cysteine 6 (C6S), …

Whole Leaf Photosynthetic Light Response In A Carnivorous Plant Species Sarracenia Alata, K. A. Hopkins, Dennis A. Gravatt

Faculty Publications

Photosynthetic light-response curves of mature leaves of Sarracenia alata were generated and characterized using a custom built chamber (2.79 L) capable of accommodating whole leaves, or pitchers, coupled to a LI-COR 6400XT Portable Photosynthesis System. In addition to generating light-response curves, chlorophyll content, leaf area, and dry mass measurements were obtained for each pitcher. Gas-exchange variables from the light-response curves are reported on a leaf area and dry mass basis. Calculated light-saturated photosynthesis was found to be 2.09 µmol(CO₂) m^-2 s^-1 with a light-saturation point of 315.14 µmol(photon) m^-2 s^-1, light-compensation point of …

Arachidin-1 And Arachidin-3 Modulation Of Rotavirus-Infected Ma104 Cells, Caleb M. Witcher, Rebekah Napier-Jameson, Hannah N. Lockwood, Macie N. Mattila, Stormey B. Wisdom, Luanna L. Saade Ferreira, Josephine Taylor, Beatrice Clack, Fabricio Medina-Bolivar, Judith M. Ball, Rebecca D. Parr

Faculty Publications

Rotavirus (RV) causes severe life-threatening diarrhea in young children and immunocompromised individuals. There are several licensed attenuated vaccines for young children, but there are no vaccines or antiviral therapeutics for immunocompromised patients of any age. Previously, our laboratory demonstrated that arachidin 1 (A1) and arachidin 3 (A3) decreases the number of infectious simian RV particles and RV non-structural protein 4 (NSP4) in a human intestinal cell line which suggests effects on RV replication. This study examined the effects of the arachidins on the human RV (Wa)-infected African green monkey kidney cell line, MA104. The addition of either A1 or A3 …

A Validation Study Of A Noninvasive Lactate Threshold Device, Rebecca M. Mcmorries, Dustin P. Joubert, Eric J. Jones, Mark D. Faries

Faculty Publications

International Journal of Exercise Science 12(2): 221-232, 2019. The lactate threshold is considered a key marker of endurance exercise performance and identification of this threshold is important in writing an exercise training program. Unfortunately, assessment of the lactate threshold has traditionally required venous or capillary blood samples and a specialized meter to assess blood lactate concentrations. Recently, a consumer grade, non-invasive device was developed to determine muscle oxygenation and estimate the lactate threshold. Purpose: The aim of this study was to assess the validity of a noninvasive lactate threshold device (NID) to determine lactate threshold heart rate (LTHR). Methods: Twenty-one …

A Time Course Study Of Rotavirus-Infected Intestinal Cells Treated With Stilbenoids And The Regulation Of Apoptosis, Rebecca D. Parr, Caleb M. Witcher, Rebekah Napier-Jameson, Hannah L. Wilson, Stormey Wisdom, Macie N. Mattila, Essence B. Strange, Josephine Taylor, Beatrice Clack, Fabricio Medina-Bolivar, Judith M. Ball

Faculty Publications

This is a time course study of virus –host interactions that are modified with the addition of two small natural products. They appear to effect virus replication and the host response to the infection.

Integrating Drone Technology With Gps Data Collection To Enhance Forestry Students Interactive Hands-On Field Experiences, Daniel Unger, I-Kuai Hung, Yanli Zhang, David Kulhavy

Faculty Publications

Undergraduate students pursuing a Bachelor of Science in Forestry (BSF) at Stephen F. Austin State University (SFA) within the Arthur Temple College of Forestry and Agriculture (ATCOFA) attend an intensive 6-week hands-on instruction in applied field methods. The second week of field station is focused on land measurement activities to introduce students to practical, hands-on, and technology based ways to survey forest boundaries. On Monday of the second week students are introduced to the concepts of how to use a handheld compass to navigate from point to point, use a consumer-grade handheld Global Positioning System (GPS) unit for collecting the …

Site Factors Influence On Herbaceous Understory Diversity In East Texas Pinus Palustris Savannas, Brooke Mccalip, Brian Oswald, Kathryn R. Kidd, Yuhi Weng, Kenneth Farrish Phd

Faculty Publications

Longleaf pine (Pinus palustris) savannas were once dominant across the southeastern U.S., including East Texas and parts of western and central Louisiana. The diverse understory associated with these historical savannas may occasionally be seen today, but not often in longleaf pine ecosystems. This project aimed to define east Texas site characteristics that are necessary to support these ecosystems with a dense and diverse herbaceous understory with little to no midstory cover. Fifty-nine plots across three study sites were established to evaluate the influence of overstory cover, basal area, aspect, elevation, and slope on the number of plant genera present. Forest …

Integrating Unmanned Aircraft Systems To Measure Linear And Areal Features Into Undergraduate Forestry Education, Reid Viegut, David Kulhavy, Daniel Unger, I-Kuai Hung, Brian Humphreys

Faculty Publications

The use of Unmanned Aircraft Systems (UAS) in undergraduate forestry education continues to expand and develop. Accuracy of data collection is an important aspect of preparation for "society-ready" foresters to meet the complex sustainable environment managing for ecological, social and economic interests. Hands-on use of a DJI Phantom 4 Pro UAS by undergraduates to measure the length and area of 30 linear features and areal features on Earth's surface were estimated. These measurements were compared (measured within the ArcMap 10.5.2 interface) to hyperspectral Pictometry imagery measured on the web-based interface and the Google Earth Pro interface. Each remotely estimated measurement …

Accuracy Of Unmanned Aerial System (Drone) Height Measurements, Daniel Unger, I-Kuai Hung, David Kulhavy, Yanli Zhang, Kai Busch-Peterson

Faculty Publications

Vertical height estimates of earth surface features using an Unmanned Aerial System (UAS) are important in natural resource management quantitative assessments. An important research question concerns both the accuracy and precision of vertical height estimates acquired with a UAS and to determine if it is necessary to land a UAS between individual height measurements or if GPS derived height versus barometric pressure derived height while using a DJI Phantom 3 would affect height accuracy and precision. To examine this question, height along a telescopic height pole on the campus of Stephen F. Austin State University (SFASU) were estimated at 2, …

Surface And Subsurface Tillage Effects On Mine Soil Properties And Vegetative Response, H. Z. Angel, Jeremy Stovall, Hans Michael Williams, Kenneth W. Farrish, Brian P. Oswald, J. L. Young

Faculty Publications

Soil compaction is an important concern for surface mine operations that require heavy equipment for land reclamation. Excessive use of rubber-tired equipment, such as scraper pans, may cause mine soil compaction and hinder the success of revegetation efforts. However, information is limited on management strategies for ameliorating the potential compacting effects of scraper pans, particularly during site preparation for loblolly pine (Pinus taeda L.) plantations. Three forms of tillage and one control were replicated five times on surface mined land in the west Gulf Coastal Plain: no tillage (NT), disking (D), single-ripping + disking (R+D), and cross-ripping + disking …