Life Sciences Commons^™

An Integrated Neuroimaging Approach For The Prediction And Analysis Of Alzheimer’S Disease And Its Prodromal Stages, Qi Zhou

FIU Electronic Theses and Dissertations

This dissertation proposes to combine magnetic resonance imaging (MRI), positron emission tomography (PET) and a neuropsychological test, Mini-Mental State Examination (MMSE), as input to a multidimensional space for the classification of Alzheimer’s disease (AD) and it’s prodromal stages including amnestic MCI (aMCI) and non-amnestic MCI (naMCI). An assessment is provided on the effect of different MRI normalization techniques on the prediction of AD. Statistically significant variables selected for each combination model were used to construct the classification space using support vector machines. To combine MRI and PET, orthogonal partial least squares to latent structures is used as a multivariate analysis …

The New Man And The Sea: Climate Change Perceptions And Sustainable Seafood Preferences Of Florida Reef Anglers, James W. Harper

Department of Earth and Environment

Florida Reef stakeholders have downplayed the role of anthropogenic climate change while recognizing the reef system’s degradation. With an emphasis on recreational anglers, a survey using contingent valuation methods investigated stakeholders’ attitudes about the Florida Reef, climate change, and willingness to pay for sustainable and local seafood. Angst expressed about acidification and other climate change effects represents a recent shift of opinion. Supermajorities were willing to pay premiums for sustainably harvested and especially local seafood. Regression analysis revealed trust in seafood labels, travel to coral reefs, political orientation, place of birth, and motorboat use as strong, direct predictors of shopping …

Ap Endonuclease 1 Prevents Trinucleotide Repeat Expansion Via A Novel Mechanism During Base Excision Repair, Jill M. Beaver, Yanhao Lai, Meng Xu, Astrid H. Casin, Eduardo E. Laverde, Yuan Liu

Department of Chemistry and Biochemistry

Base excision repair (BER) of an oxidized base within a trinucleotide repeat (TNR) tract can lead to TNR expansions that are associated with over 40 human neurodegenerative diseases. This occurs as a result of DNA secondary structures such as hairpins formed during repair. We have previously shown that BER in a TNR hairpin loop can lead to removal of the hairpin, attenuating or preventing TNR expansions. Here, we further provide the first evidence that AP endonuclease 1 (APE1) prevented TNR expansions via its 3′-5′ exonuclease activity and stimulatory effect on DNA ligation during BER in a hairpin loop. Coordinating with …

Linking Old Librarianship To New: Aligning 5-Steps Of The Innovator's Dna In Creating Thematic Discovery Systems For The Everglades, L. Bryan Cooper, Margarita Perez Martinez

Works of the FIU Libraries

This poster presentation from the May 2015 Florida Library Association Conference, along with the Everglades Explorer discovery portal at http://ee.fiu.edu, demonstrates how traditional bibliographic and curatorial principles can be applied to: 1) selection, cross-walking and aggregation of metadata linking end-users to wide-spread digital resources from multiple silos; 2) harvesting of select PDFs, HTML and media for web archiving and access; 3) selection of CMS domains, sub-domains and folders for targeted searching using an API.

Choosing content for this discovery portal is comparable to past scholarly practice of creating and publishing subject bibliographies, except metadata and data are housed in …

The Transcription Factors Ets1 And Sox10 Interact During Murine Melanocyte Development, Amy Saldana-Caboverde, Erasmo M. Perera, Dawn E. Watkins-Chow, Nancy F. Hansen, Meghana Vemulapalli, James C. Mullikin, Nisc Compataive Sequencing Program, National Human Genome Research Institute, William J. Pavan, Lidia Kos

Biomolecular Sciences Institute: Faculty Publications

Melanocytes, the pigment-producing cells, arise from multipotent neural crest (NC) cells during embryogenesis. Many genes required for melanocyte development were identified using mouse pigmentation mutants. The variable spotting mouse pigmentation mutant arose spontaneously at the Jackson Laboratory. We identified a G-to-A nucleotide transition in exon 3 of the Ets1 gene in variable spotting, which results in a missense G102E mutation. Homozygous variable spotting mice exhibit sporadic white spotting. Similarly, mice carrying a targeted deletion of Ets1 exhibit hypopigmentation; nevertheless, the function of Ets1 in melanocyte development is unknown. The transcription factor Ets1 is widely expressed in developing organs and …

Oroxylin A Promotes Pten-Mediated Negative Regulation Of Mdm2 Transcription Via Sirt3-Mediated Deacetylation To Stabilize P53 And Inhibit Glycolysis In Wt-P53 Cancer Cells, Kai Zhao, Yuxin Zhou, Chen Qiao, Ting Ni, Zhiyu Li, Xiaotang Wang, Qinglong Guo, Na Lu, Libin Wei

Department of Chemistry and Biochemistry

Introduction

p53 plays important roles in regulating the metabolic reprogramming of cancer, such as aerobic glycolysis. Oroxylin A is a natural active flavonoid with strong anticancer effects both in vitro and in vivo.

Methods

wt-p53 (MCF-7 and HCT116 cells) cancer cells and p53-null H1299 cancer cells were used. The glucose uptake and lactate production were analyzed using Lactic Acid production Detection kit and the Amplex Red Glucose Assay Kit. Then, the protein levels and RNA levels of p53, mouse double minute 2 (MDM2), and p53-targeted glycolytic enzymes were quantified using Western blotting and quantitative polymerase chain reaction (PCR), respectively. …

The Effects Of Climate Warming On Plant-Herbivore Interactions, Nathan Lemoine

FIU Electronic Theses and Dissertations

Rising temperatures associated with climate change will alter the fundamental physiological processes of most ectothermic species. Drastic changes in catabolic and anabolic reaction rates exert strong effects on growth, reproduction, and consumption rates that cascade up through all levels of the biological hierarchy. This dissertation determined how climate warming might alter the important relationship between plants and insect herbivores, as mediated through changes in herbivore physiology. Consumption and fitness increased with temperature for almost all consumers. However, all consumers also exhibited a critical temperature, beyond which consumption declined rapidly through metabolism continued to increase. This mismatch in metabolic demands and …

Three New Species Of Tursiocola (Bacillariophyta) From The Skin Of The West Indian Manatee (Trichechus Manatus), Thomas A. Frankovich, Michael J. Sullivan, Nicole I. Stacy

Center for Coastal Oceans Research Faculty Publications

Three new species of Tursiocola are described from the skin of the West Indian manatee bringing the total number of known species in the genus to seven. The range of morphological diversity within the genus is greatly expanded. The number of poroid rows on the copulae is no longer a valid characteristic for the separation of Tursiocola from the ceticolous genus Epiphalaina. The presence of a butterfly-like structure in the central area of the former is at present the best criterion for separating the 2 genera. The 3 new Tursiocola species accounted for nearly 90% of all diatom valves on …

Changing Bacterial Growth Efficiencies Across A Natural Nutrient Gradient In An Oligotrophic Estuary, Amber A. Kiger

FIU Electronic Theses and Dissertations

Recent studies have characterized coastal estuarine systems as important components of the global carbon cycle. This study investigated carbon cycling through the microbial loop of Florida Bay by use of bacterial growth efficiency calculations. Bacterial production, bacterial respiration, and other environmental parameters were measured at three sites located along a historic phosphorus-limitation gradient in Florida Bay and compared to a relatively nutrient enriched site in Biscayne Bay. A new method for measuring bacterial respiration in oligotrophic waters involving tracing respiration of ¹³C-glucose was developed. The results of the study indicate that ¹³C tracer assays may provide a better …

Pollination, Herbivory, And Habitat Fragmentation: Their Effects On The Reproductive Fitness Of Angadenia Berteroi, A Native Perennial Plant Of The South Florida Pine Rocklands, Beyte Barrios Roque

FIU Electronic Theses and Dissertations

Angadenia berteroi is a tropical perennial subshrub of the pine rocklands with large yellow flowers that set very few fruits. My dissertation seeks to elucidate the factors that affect the reproductive fitness of Angadenia berteroi a native species of the south Florida pine rocklands. I provide novel information on the pollination biology of this native species. I also assess the effects of herbivory on growth and the reproductive success of A. berteroi. Finally, I elucidate how habitat fragmentation and quality are correlated with reproductive fitness of this native perennial plant.

Using a novel experimental approach, I determined the most effective …

Isaw: Integrating Structure, Actors, And Water To Study Socio-Hydro-Ecological Systems, Rebecca Hale, Andrea Armstrong, Michelle A. Baker, Sean Bedingfield, David Betts, Caleb Buahin, Martin Buchert, Todd Crowl, R. Ryan Dupont, James R. Ehleringer, Joanna Endter-Wada, Courtney Flint, Jacqualine Grant, Sarah Hinners, Jeffery S. Horsburgh, Douglas Jackson-Smith, Amber S. Jones, Carlos Licon, Sarah E. Null, Augustina Odame, Diane E. Pataki, David Rosenberg, Madlyn Runburg, Philip Stoker, Courtenay Strong

SERC Faculty Publications

Urbanization, climate, and ecosystem change represent major challenges for managing water resources. Although water systems are complex, a need exists for a generalized representation of these systems to identify important components and linkages to guide scientific inquiry and aid water management. We developed an integrated Structure-Actor-Water framework (iSAW) to facilitate the understanding of and transitions to sustainable water systems. Our goal was to produce an interdisciplinary framework for water resources research that could address management challenges across scales (e.g., plot to region) and domains (e.g., water supply and quality, transitioning, and urban landscapes). The framework was designed to be generalizable …

Intracranial Volume Estimation And Graph Theoretical Analysis Of Brain Functional Connectivity Networks, Saman Sargolzaei

FIU Electronic Theses and Dissertations

Understanding pathways of neurological disorders requires extensive research on both functional and structural characteristics of the brain. This dissertation introduced two interrelated research endeavors, describing (1) a novel integrated approach for constructing functional connectivity networks (FCNs) of brain using non-invasive scalp EEG recordings; and (2) a decision aid for estimating intracranial volume (ICV). The approach in (1) was developed to study the alterations of networks in patients with pediatric epilepsy. Results demonstrated the existence of statistically significant (p

Evaluation Of Some Statistical Methods For The Identification Of Differentially Expressed Genes, Andrew L. Haddon

FIU Electronic Theses and Dissertations

Microarray platforms have been around for many years and while there is a rise of new technologies in laboratories, microarrays are still prevalent. When it comes to the analysis of microarray data to identify differentially expressed (DE) genes, many methods have been proposed and modified for improvement. However, the most popular methods such as Significance Analysis of Microarrays (SAM), samroc, fold change, and rank product are far from perfect. When it comes down to choosing which method is most powerful, it comes down to the characteristics of the sample and distribution of the gene expressions. The most practiced method is …

Inhibition Of Zn(Ii) Binding Type Ia Topoisomerases By Organomercury Compounds And Hg(Ii), Bokun Cheng, Thirunavukkarasu Annamalai, Shayna Sandhaus, Priyanka Bansod, Yuk-Ching Tse-Dinh

Department of Chemistry and Biochemistry

Type IA topoisomerase activities are essential for resolving DNA topological barriers via an enzyme-mediated transient single strand DNA break. Accumulation of topoisomerase DNA cleavage product can lead to cell death or genomic rearrangement. Many antibacterial and anticancer drugs act as topoisomerase poison inhibitors that form stabilized ternary complexes with the topoisomerase covalent intermediate, so it is desirable to identify such inhibitors for type IA topoisomerases. Here we report that organomercury compounds were identified during a fluorescence based screening of the NIH diversity set of small molecules for topoisomerase inhibitors that can increase the DNA cleavage product of Yersinia pestis topoisomerase …

The Effect Of Sample And Sample Matrix On Dna Processing: Mechanisms For The Detection And Management Of Inhibition In Forensic Samples, Lilliana I. Moreno

FIU Electronic Theses and Dissertations

The presence of inhibitory substances in biological forensic samples has, and continues to affect the quality of the data generated following DNA typing processes. Although the chemistries used during the procedures have been enhanced to mitigate the effects of these deleterious compounds, some challenges remain. Inhibitors can be components of the samples, the substrate where samples were deposited or chemical(s) associated to the DNA purification step. Therefore, a thorough understanding of the extraction processes and their ability to handle the various types of inhibitory substances can help define the best analytical processing for any given sample. A series of experiments …

A Comparative Study Of Concurrent Acoustic And Diver Survey Data, And Fish Community Descriptions Of A High Latitude Coral Reef, Florida, Usa, Adam M. Zenone

FIU Electronic Theses and Dissertations

Fisheries independent data on relatively unstudied nekton communities were used to explore the efficacy of new tools to be applied in the investigation of shallow coastal coral reef habitats. These data obtained through concurrent diver visual and acoustic surveys provided descriptions of spatial community distribution patterns across seasonal temporal scales in a previously undocumented region. Fish density estimates by both diver and acoustic methodologies showed a general agreement in ability to detect distributional patterns across reef tracts, though magnitude of density estimates were different. Fish communities in southeastern Florida showed significant trends in spatial distribution and seasonal abundance, with higher …

Intracellular Signaling And Trafficking In Cancer: Role Of Rab5-Gtpase In Migration And Invasion Of Breast Cells, Nicole Porther

FIU Electronic Theses and Dissertations

Metastasis is characterized pathologically by uncontrolled cell invasion, proliferation, migration and angiogenesis. Steroid hormones, such as estrogen, and growth factors, which include insulin growth factor I/II (IGF-1/IGF-2) therapy has been associated with most if not all of the features of metastasis. It has been determined that IGF-1 increases cell survival of cancer cells and potentiate the effect of E2 and other ligand growth factors on breast cancer cells. However not much information is available that comprehensively expounds on the roles of insulin growth factor receptor (IGFR) and Rab GTPases may play in breast cancer. The latter, Rab GTPases, are small …

Characterization Of The Poxab Operon Encoding A Class D Carbapenemase In Pseudomonas Aeruginosa,, Diansy Zincke

FIU Electronic Theses and Dissertations

Pseudomonas aeruginosa is a dreaded opportunistic pathogen that causes severe and often intractable infections in immunocompromised and critically ill patients. This bacterium is also the primary cause of fatal lung infections in patients with cystic fibrosis and a leading nosocomial pathogen responsible for nearly 10% of all hospital-acquired infections. P. aeruginosa is intrinsically recalcitrant to most classes of antibiotics and has the ability to acquire additional resistance during treatment. In particular, resistance to the widely used β-lactam antibiotics is frequently mediated by the expression of AmpC, a chromosomally encoded β-lactamase that is ubiquitously found in P. aeruginosa strains. This dissertation …

Overweight/Obesity And Hiv Disease Progression In Hiv+ Adults In Botswana, Sabrina Sales Martinez

FIU Electronic Theses and Dissertations

Studies indicate that overweight and obesity protect against HIV-disease progression in antiretroviral therapy (ART)-naïve patients. We examined retrospectively the relationship of overweight/obesity with HIV-disease progression in ART-naïve HIV+ adults in Botswana in a case-control study with 18-month follow-up, which included 217 participants, 139 with BMI 18.0-24.9 kg/m² and 78 with BMI ≥25 kg/m². Archived plasma samples were used to determine inflammatory markers: leptin and bacterial endotoxin lipopolysaccharide (LPS), and genotype single nucleotide polymorphisms (SNPs) of the Fat Mass and Obesity Associated Gene (FTO).

At baseline, BMI was inversely associated with risk for AIDS-defining conditions (HR=0.218; 95%CI=0.068, 0.701, …

Redox Regulation Of Ras Proteins In Dictyostelium Discoideum, Boris Castillo Chabeco

FIU Electronic Theses and Dissertations

Reactive oxygen species are a normal consequence of life in an aerobic environment. However when they deviate from the narrow permissible range in cells, oxidative damage can occur. Dictyostelium discoideum is a model organism ideal for the study of cell signaling events such as those affected by oxidative stress. It was previously shown that Ras signaling in Dictyostelium is affected by genetic inactivation of the antioxidant enzyme Superoxide dismutase C (SodC) and in vitro data suggests that the NKCD motif of Ras is the redox target of superoxide.

The main objective of this project was to determine the mechanism of …

Proteomic Analysis Of Wolbachia Symbiosis Within The Drosophila, Ricardo Perez-Dulzaides

Undergraduate Research at FIU (URFIU) Conference

Wolbachia pipientis are bacterial endosymbionts of arthropods and in some filarial nematodes. Wolbachia are of particular interest because nematodeWolbachia have been shown to cause the diseases African river blindness and Lymphatic Filariasis. Doxycycline can be used to eliminate nematode Wolbachia, however, more efficient treatments are needed. Ideally, we would like to repurpose another FDA approved drug that helps to shorten treatment duration. Vitamins are one of the best classes of FDA approved compounds, generally recognized as safe. Interestingly, prior work by Serbus and colleagues found that dietary yeast, which is highly enriched in vitamins, dramatically reducesWolbachia titer …

Optimizing The Synthesis Of Azn, Grethel Miro

Undergraduate Research at FIU (URFIU) Conference

Azulenyl nitrone (AZN) is a bright green compound that can be used to stain different compounds, including plastics. When these stained plastics are irradiated, as they commonly are in the sterilization of medical devices, AZN changes color from green to red, constituting a permanent change. This would make obsolete the current methods of radioactive labeling and maintain the integrity of medical equipment. Although a method of synthesis is already in place, the aim was to improve the yield significantly and find a more efficient and cost-effective procedure. Last year, the procedure used resulted in 18 to 20% of AZN synthesized …

A Rapid And Sensitive High-Throughput Screening Method To Identify Compounds Targeting Protein–Nucleic Acids Interactions, Nicole Alonso, Roboan Guillen

Undergraduate Research at FIU (URFIU) Conference

DNA-binding and RNA-binding proteins are usually considered ‘undruggable’ partly due to the lack of an efficient method to identify inhibitors from existing small molecule repositories. Here we report a rapid and sensitive high-throughput screening approach to identify compounds targeting protein–nucleic acids interactions based on protein–DNA or protein–RNA interaction enzyme-linked immunosorbent assays (PDI-ELISA or PRI-ELISA). We validated the PDI-ELISA method using the mammalian highmobility- group protein AT-hook 2 (HMGA2) as the protein of interest and netropsin as the inhibitor of HMGA2–DNA interactions. With this method we successfully identified several inhibitors and an activator for HMGA2–DNA interactions from a collection of 29 …

Understanding The Role Of Dimethylsulfoniopropionate As A Potential Chemotactic Cue For Coral-Associated Bacteria, Leidy Gonzalez

Undergraduate Research at FIU (URFIU) Conference

Most reef-building corals are known to engage in symbiosis not only with unicellular dinoflagellates from the genus, Symbiodinium, but they also sustain highly complex symbiotic associations with other microscopic organisms such as bacteria, fungi, and viruses. The details of these non-pathogenic interactions remain largely unclear. The impetus of this study is to gain a better understanding of the symbiotic interaction between marine bacteria and a variety of coral species representative of differing morphologies. Studies have shown that certain bacterial orders associate specifically with certain coral species, thus making the symbiotic synergy a non-random consortium. Consequently both corals and bacteria may …

Genomic Studies Of Hla Region Gene Expression During Pseudomonas Aeruginosa Infection, Daniela Florit

Undergraduate Research at FIU (URFIU) Conference

The human leukocyte antigen (HLA) complex is an extensively studied region of genes that been found to have an immunoregulatory function. Pseudomonas aeruginosa, a pathogen commonly found in the environment, is capable of infecting individuals with weakened immune systems, and is considered the bacterium associated with the highest mortality rate. Previous genetic studies of the HLA region have found correlations between bacterial infection and its effect on regulating HLA genes’ expression to establish their infection. In this project we will analyze the expression classical HLA loci (A, B, C, DRA/B1-3-5, DQA1/B1) in human lung epithelial cells and human macrophage cells …

The Role Of Agriculture And Food Consumption In Tropical Conservation, Brian Machovina

FIU Electronic Theses and Dissertations

A growing human population, shifting human dietary habits, and climate change are negatively affecting global ecosystems on a massive scale. Expanding agricultural areas to feed a growing population drives extensive habitat loss, and climate change compounds stresses on both food security and ecosystems. Understanding the negative effects of human diet and climate change on agricultural and natural ecosystems provides a context within which potential technological and behavioral solutions can be proposed to help maximize conservation. The purpose of this research was to (1) examine the potential effects of climate change on the suitability of areas for commercial banana plantations in …

Allatotropin Neuropeptide Signaling, Juvenile Hormone Homeostasis And The Aedes Aegypti Gonotrophic Cycle, John S. Castillo, Brian Garcia-Rodriguez

Undergraduate Research at FIU (URFIU) Conference

Nutrient homeostasis is intrinsically linked to mosquito behavior. Female mosquitoes use vertebrate blood meals to nourish their eggs. After a female mosquito ingests a blood meal, she abruptly shifts her behavior. No longer does she seek human hosts, she now avoids them and rests away from predation while her eggs develop. Then, the female mosquito searches for standing water where she will lay her eggs. Only after the female deposits her eggs is attraction to host stimuli recovered and the gonotrophic cycle begins anew. The gonotrophic cycle in Aedes aegypti is clearly defined, but the molecular mechanism that links nutrient …

Conformational Kinetics Study Of Mp-11 Using Tims-Ms And Molecular Dynamics, Christopher Harrilal, Jaroslava Miksovska, Emily R. Schenk

Undergraduate Research at FIU (URFIU) Conference

In the present work, we studied the conformational kinetics of microperoxidase 11 (MP-11), a digest fragment of cytochrome C that contains 11 amino acids with a covalently attached heme group. In particular, a novel technique recently developed at FIU in collaboration with Bruker Daltonics Inc. combined with theoretical calculation was used for the characterization of MP- 11 conformational space [1-3]. Accurate ion-neutral collision cross sections were measured for all MP-11 generated charge states. Since MP-11 (like cytochrome C) undergoes conformational changes as a function of the solvent state, MP-11 ions were produced by electrospray ionization (ESI) in order to preserve …

Bat Species Identified At Fiu Mmc Campus Using Automated Echolocation Recording Systems, Barbara Mera, Jonathan Diaz, Jessica Samuel, Anna Quinones

Undergraduate Research at FIU (URFIU) Conference

No abstract provided.

Expression And Purification Of 15n, 13clabeled Hmga2 For Nmr Structural Studies, Ashley Tschiggfrie, Roboan Guillen

Undergraduate Research at FIU (URFIU) Conference

The mammalian high mobility group protein AT-hook 2 (HMGA2) is a nuclear oncoprotein, and its abnormal expression is directly linked to tumorigenesis. The HMGA2 gene is located on the chromosomal bands 12q13-15. Rearrangement of these bands disrupts the normal functions of HMGA2 and causes the formation of benign tumors, such as lipomas, and malignant tumors, such as lung cancer. In this study, our objective was to make sufficient amounts of 15N-, 13C-labeled HMGA2 for NMR studies to obtain a high-resolution structure of HMGA2-DNA complexes. In order to label this protein, E. coli strain BLR(DE3), containing a plasmid expressing HMGA2, was …