Life Sciences Commons^™

The Flora Of Greater San Quintín, Baja California, Mexico (2005–2010), Sula E. Vanderplank

Aliso: A Journal of Systematic and Floristic Botany

The plants of San Quintín (Baja California, Mexico) were documented through intensive fieldwork and collection of herbarium specimens to create a checklist of species. The region is located near the southernmost extent of the California Floristic Province, and the flora is influenced by the adjacent desert to the south. A total of 435 plant taxa were documented, of which 82% are native plants. Almost one in three native plant taxa in Greater San Quintín is a sensitive species, here documented as rare and/or locally endemic, and many taxa have yet to be evaluated fully for rarity and threats. Four major …

A New Variety Of Lomatium Ravenii (Apiaceae) From The Northern Great Basin And Adjacent Owyhee Region, Kimberly M. Carlson, Donald H. Mansfield, James F. Smith

Aliso: A Journal of Systematic and Floristic Botany

Variability in the group of Lomatium species comprising L. nevadense, L. ravenii, and L. foeniculaceum has led to conflicting classification schemes. While some taxonomists have treated L. ravenii as a distinct species made up of all the populations from California, Nevada, Idaho, and Oregon, others considered L. ravenii to be nothing more than a morphological extreme of L. nevadense. We examined morphological and phylogenetic data from across the range of L. ravenii, concluding that variation in the species warrants varietal distinction. Non-metric multidimensional scaling analysis of 29 populations shows two distinct groups—one from the vicinity of …

Cover Page

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

Index

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

Two Epiparasitic Species Of Phoradendron (Viscaceae) From Honduras: One New And For The Other A Range Extension And Host Determination, Delbert Wiens, Clyde L. Calvin

Aliso: A Journal of Systematic and Floristic Botany

A new species of Phoradendron, Ph. mathiasenii, is described, and a range extension and host are given for Ph. tikalense. Both species are from Honduras and grow as epiparasites, i.e., mistletoes parasitizing other mistletoes. The parasitic host for both epiparasitic species of Phoradendron is Psittacanthus angustifolius (Loranthaceae), which in turn is parasitic on the terrestrial host, Pinus oocarpa, a common forest tree in the collection area. Although the two species of Phoradendron parasitize the same parasitic host and co-occur in the area, they are distinct morphologically. Many plants of Ph. mathiasenii were observed at several collection …

Rediscovery Of Monotropastrum Sciaphilum (Andres) G.D.Wallace In China After 91 Years, Min Shen, Chang-Qin Zhang, Gary D. Wallace

Aliso: A Journal of Systematic and Floristic Botany

Monotropastrum sciaphilum (Ericaceae), a mycoheterotrophic member of subfamily Monotropoideae, was rediscovered at its type locality in Yunnan Province, China, 91 years after it was first collected. The type locality is the only locality from which it is known. Field observations in 2007–2010 indicated that inflorescences emerge from the soil between late April and early September. The restricted distribution of M. sciaphilum recommends its listing in the IUCN red book.

Evolution Of Spur-Length Diversity In Aquilegia Petals Is Achieved Solely Through Cell-Shape Anisotropy, Joshua R. Puzey, Sharon J. Gerbode, Scott A. Hodges, Elena M. Kramer, L. Mahadevan

All HMC Faculty Publications and Research

The role of petal spurs and specialized pollinator interactions has been studied since Darwin. Aquilegia petal spurs exhibit striking size and shape diversity, correlated with specialized pollinators ranging from bees to hawkmoths in a textbook example of adaptive radiation. Despite the evolutionary significance of spur length, remarkably little is known about Aquilegia spur morphogenesis and its evolution. Using experimental measurements, both at tissue and cellular levels, combined with numerical modelling, we have investigated the relative roles of cell divisions and cell shape in determining the morphology of the Aquilegia petal spur. Contrary to decades-old hypotheses implicating a discrete meristematic zone …

A Mathematician Weighs In On The Evolution Debate, Kris H. Green

Journal of Humanistic Mathematics

There are a variety of reasons underlying the lack of public acceptance for the theory of evolution in the United States. An overlooked cause is related to problems with the mathematics curriculum in the K-12 setting. In this essay, we examine this relationship and propose changes to the mathematics curriculum that could improve mathematical thinking while also providing a basis for understanding theories, like evolution, that are poorly understood.

Analytic And Numerical Studies Of A Simple Model Of Attractive-Repulsive Swarms, Andrew S. Ronan

HMC Senior Theses

We study the equilibrium solutions of an integrodifferential equation used to model one-dimensional biological swarms. We assume that the motion of the swarm is governed by pairwise interactions, or a convolution in the continuous setting, and derive a continuous model from conservation laws. The steady-state solution found for the model is compactly supported and is shown to be an attractive equilibrium solution via linear perturbation theory. Numerical simulations support that the steady-state solution is attractive for all initial swarm distributions. Some initial results for the model in higher dimensions are also presented.

Cover Page

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

Plants Of The Colonet Region, Baja California, Mexico, And A Vegetation Map Of Colonet Mesa, Alan B. Harper, Sula Vanderplank, Mark Dodero, Sergio Mata, Jorge Ochoa

Aliso: A Journal of Systematic and Floristic Botany

The Colonet region is located at the southern end of the California Floristic Province, in an area known to have the highest plant diversity in Baja California. A preliminary list of vouchered specimens is developed for the area, and a vegetation map for Colonet Mesa is presented. The Colonet region has at least 435 vascular plant taxa, of which 383 are native to Baja California, and 52 are endemic or nearly endemic. This list includes five local endemic taxa known only from the Colonet region, 18 taxa on the California Native Plant Society List 1B of taxa that are "rare, …

Sinker Structure Of Phoradendron Californicum (Viscaceae) Confounds Its Presumed Close Relationship To Other Acataphyllous Species, Rudolf Schmid, Clyde L. Calvin, Carol A. Wilson

Aliso: A Journal of Systematic and Floristic Botany

Phoradendron is the largest genus of New World mistletoes, with about 250 species in two subgenera, Boreales and Aequatoriales, corresponding, respectively, to northern acataphyllous and southern cataphyllous groups. The typically acataphyllous P. californicum of western North America is controversial because recent phylogenetic work has nested it in the southern cataphyllous clade. Seedling establishment, stem anatomy, and endophytic system structure of this species were studied. Seedling haustorial holdfasts have gland cavities, structures considered absent in the Viscaceae clade of Santalales. The stem epidermis has a thick cuticle, deeply sunken stomata, and branched multicellular trichomes. The stem has an outer cortex …

Phylogenetic Evaluation Of Series Delimitations In Section Palmata (Acer, Aceroideae, Sapindaceae) Based On Sequences Of Nuclear And Chloroplast Genes, Jianhua Li

Aliso: A Journal of Systematic and Floristic Botany

Acer section Palmata (Japanese maples) is the largest section within the genus; however, series delimitations within section Palmata have not been evaluated in a phylogenetic context. Both maximum parsimony and maximum likelihood analyses of DNA sequence data of nuclear rDNA ITS and chloroplast genes (ndhF, trnL-trnF, and psbA-trnH) from 23 species of Acer section Palmata show that traditional series do not form individual clades. Results from this study support the most recent taxonomic treatment of Acer that does not recognize any series in section Palmata. Nuclear and chloroplast phylogenies are significantly …

Nomenclatural Changes For Some Grasses In California. Ii., James P. Smith Jr., J. Travis Columbus

Aliso: A Journal of Systematic and Floristic Botany

Two additional nomenclatural changes are required for Poaceae treatments that will appear in the second edition of The Jepson Manual: Higher Plants of California. They are Elymus x gouldii and Festuca temulenta. The former corrects a violation of the rule in the International Code of Botanical Nomenclature involving the naming of hybrids, and the latter involves a widely occurring non-native grass in California traditionally assigned to Lolium.

Wood Anatomy Of Family Salvadoraceae From The Indian Subcontinent With Special Reference To The Ultrastructure Of The Vessel Wall, Vishakha Saxena, Sangeeta Gupta

Aliso: A Journal of Systematic and Floristic Botany

The present study describes the wood microstructure of Azima tetracantha, Salvadora oleoides, and S. persica, the members of family Salvadoraceae represented in the Indian Subcontinent. An identification key based on wood anatomical features has been developed for the separation of the species. SEM studies revealed the presence of vesturing in intervessel pits of Salvadora.

Ponderosa Pine Revisited, J. Robert Haller, Nancy J. Vivrette

Aliso: A Journal of Systematic and Floristic Botany

We here recognize a new variety, Pinus ponderosa var. pacifica, in the Pacific portion of the species' distribution and present a new combination for Washoe pine as a variety, Pinus ponderosa var. washoensis. In this treatment, we reject the neotype of Pinus ponderosa selected by Lauria and designate instead the branch collected by David Douglas with mistletoe (Arceuthobium campylopodum) as lectotype for Pinus ponderosa. Table 1 compares the distinguishing characters of the North Plateau (typical) variety, the Pacific variety, and the Washoe variety of Pinus ponderosa with a closely related species, Pinus jeffreyi. Figure …

Distribution And Regional Ecology Of Californian Palm Oases Interpreted From Google Earth Images, Richard A. Minnich, Ernesto Franco-Vizcaíno, Mario Salazar-Ceseña

Aliso: A Journal of Systematic and Floristic Botany

The native fan palms of the Baja California peninsula (Mexico) and neighboring southern California (USA) comprise two species each in Washingtonia and Brahea. While these are among the most familiar ornamental palms in the world, many features of their taxonomy, distribution, and environmental relationships remain unresolved. We utilized Google Earth Digital Globe imagery (and limited surveys by air and land) to develop the first map detailing the geographic distribution of palm populations in the Peninsular Range Province (PRP) and used these data to formulate new hypotheses on their biotic and abiotic relationships. We inventoried 15,216 populations covering an area …

Subaerial Freshwater Stromatolites In Deer Cave, Sarawak – A Unique Geobiological Cave Formation, Joyce Lundberg, Donald A. Mcfarlane

WM Keck Science Faculty Papers

A suite of distinctive freshwater subaerial phosphatic stromatolites is developed close to the northeastern entrance of Deer Cave, Gunung Mulu National Park, Sarawak, Borneo, in conditions of very low light but ample supply of nutrients from guano. These stromatolites are not particulate; they are composed of alternating layers of more porous and more dense amorphous hydroxylapatite. This biomineralization occurs as moulds of coccoid (the majority) and filamentous (less abundant) cyanobacteria. Mineralization occurs at a pH of ~ 7.0 in the extracellular sheaths and in micro-domains of varying carbonate content in the surrounding mucus of the biofilm. The most recent surfaces …

Effect Of Substrate Composition And Alignment On Corneal Cell Phenotype, Donna Phu '09, Lindsay S. Wray '08, Robert V. Warren '10, Richard C. Haskell, Elizabeth J. Orwin

All HMC Faculty Publications and Research

Corneal blindness is a significant problem treated primarily by corneal transplants. Donor tissue supply is low, creating a growing need for an alternative. A tissue-engineered cornea made from patient-derived cells and biopolymer scaffold materials would be widely accessible to all patients and would alleviate the need for donor sources. Previous work in this lab led to a method for electrospinning type I collagen scaffolds for culturing corneal fibroblasts ex vivo that mimics the microenvironment in the native cornea. This electrospun scaffold is composed of small-diameter, aligned collagen fibers. In this study, we investigate the effect of scaffold nanostructure and composition …

A New Genus Of Soft Coral Of The Family Alcyoniidae (Cnidaria, Octocorallia) With Re-Description Of A New Combination And Description Of A New Species, Catherine S. Mcfadden, Yehuda Benayahu

All HMC Faculty Publications and Research

A new genus, Aldersladum (family Alcyoniidae), is established to accommodate a previously described species, Effl atounaria sodwanae Benayahu, 1993 (family Xeniidae) from Sodwana Bay, South Africa that was wrongly assigned to the latter genus. Th is species is redescribed and a second new species, A. jengi from Penghu Is., Taiwan, is described. Th e diagnostic features of the new genus include the presence of only figure-eight shaped platelets in all parts of the colony, thus differentiating it from all known genera of the Alcyoniidae. Based on examination of additional material from other localities, the zoogeographical distribution of the genus is …

Do Longer Delays Matter? The Effect Of Prolonging Delay In Ctl Activation, Angela Gallegos, Ami E. Radunskaya

Pomona Faculty Publications and Research

The activation of a specific immune response takes place in the lymphoid organs such as the spleen. We present here a simplified model of the proliferation of specific immune cells in the form of a single delay equation. We show that the system can undergo switches in stability as the delay is increased, and we interpret these results in the context of sustaining an effective immune response to a dendritic cell vaccine.

Inter-Colony Comparison Of Diving Behavior Of An Arctic Top Predator: Implications For Warming In The Greenland Sea, Nina J. Karnovsky, Zachary W. Brown '07, Jorg Welcker, Ann M.A. Harding, Wojciech Walkusz, André Cavalcanti, Johanna S. Hardin, Alexander Kitaysky, Geir Gabrielsen, David Grémillet

Pomona Faculty Publications and Research

The goal of this study was to assess how diverse oceanographic conditions and prey communities affect the foraging behavior of little auks Alle alle. The Greenland Sea is characterized by 3 distinct water masses: (1) the East Greenland Current (EGC), which carries Arctic waters southward; (2) the Sørkapp Current (SC), which originates in the Arctic Ocean but flows north along the west coast of Spitsbergen; and (3) the West Spitsbergen Current (WSC), which carries warm Atlantic-derived water north. Each of these 3 water masses is characterized by a distinct mesozooplankton community. Little auks breeding adjacent to the EGC have …

Neural Responses To Vibration During Wobble Board Balancing, Michael Nguyentat

CMC Senior Theses

Falling, an epidemic most prevalently seen in the elderly population, accounts for the majority of injury-related cases seen by emergency departments across the United States. Unfortunately, with no large-scale institutionalization of a solution, the problem is only expected to exacerbate as our planet’s population approaches the 7 billion mark. In the wake of the recent surge of falls among the elderly, Japan has implemented a program to include unicycling in the physical education curriculum for elementary schools across the country. The goal for this program is to encourage children to establish strong fundamental balancing skills, which could potentially alleviate the …

Overcoming The Obstacles To Sustainability In Ghana, Ashley M. Scott

CMC Senior Theses

For several decades following its independence from Great Britain, Ghana’s policies continued to promote over-extraction of natural resources to the detriment of its economy and rural communities. Agricultural and forestry policy has gradually evolved to foster more sustainable and equitable practices, as in building partnerships with the private sector to fund infrastructure improvements. Policy has recently recognized the dire need to adopt agricultural practices and means of forest resource extraction that are compatible with ecological stewardship. However, many shortcomings are still apparent. Large logging operations completely disregard forestry regulations with impunity, whereas rural sustenance extractors are severely punished in the …

The Characterization Of Genes Involved In Response To The Phenol Derivative And Xenoestrogen Bisphenol-A In Saccharomyces Cerevisiae, Sasha N. Farina

CMC Senior Theses

Bisphenol A is an estrogenic compound that is found in polycarbonate plastics and epoxy resins; humans are continuously exposed to the compound and it is believed to possess the same carcinogenic effects as estrogen (Iso, 2006). In this study, I used Saccharomyces cerevisiae as a model organism to identify mechanisms by which BPA acts based on the genomic profiling of kinase genes from a Mat-α haploid deletion library. Kinases regulate many other proteins, so the identification of a single mutant could identify an entire affected pathway of genes. I conducted a systematic screen of these mutants using the phenotype of …

Forest Policy And Community-Based Conservation In Democratic Republic Of The Congo, Brittany N. Taylor

CMC Senior Theses

Review of forestry policy and deforestation in the Democratic Republic of the Congo, with a look at REDD, national parks, forest certification systems, non-timber forest products (NTFPs) and a focus on community-based conservation.

Preventing Mother-To-Child Transmission Of Human Immunodeficiency Virus-1 (Hiv-1): Effects Of Intrapartum And Neonatal Single-Dose Nevirapine Prophylaxis And Subsequent Hiv-1 Drug Resistance At Antiretroviral Treatment Initiation, Amanda L. Harmon

CMC Senior Theses

The prevention of mother-to-child transmission is one of the most powerful tools in human immunodeficiency virus type 1 (HIV-1) prevention and has huge potential to improve both maternal and child health. In the absence of any preventative measures, infants born to and breastfed by their HIV-positive mothers have roughly a one-in-three chance of acquiring the infection themselves. HIV can be passed on from mother-to-child during pregnancy, during labor and delivery, and even after during breastfeeding.

Intrapartum and neonatal single-dose nevirapine (sd-NVP) is the foundation of preventing mother-to-child transmission in lower resource settings where it has been used alone or as …