Life Sciences Commons^™

Linking Wildlife Populations With Ecosystem Change: State-Of-The-Art Satellite Ecology For National-Park Science, Mark Hebblewhite

Biological Sciences Faculty Publications

As human impacts increase in national parks and the greater ecosystems surrounding them, the National Park Service faces the difficulty of monitoring ecosystem changes and responses of key wildlife indicator species within parks. Responses of bison to trail grooming in Yellowstone National Park (Wyoming, Montana, and Idaho) and control of the animals once they leave the park (Bruggeman et al. 2007), migration of wildlife across park boundaries (Griffith et al. 2002; Berger 2004), effects of restored wolves on vegetation communities through trophic cascades (Hebblewhite et al. 2005), and responses of wildlife to the use of prescribed fires all represent problems …

Exercise-And Hypoxia-Induced Anaerobic Metabolism And Recovery: A Student Laboratory Exercise Using Teleost Fish, Bernard Rees

Biological Sciences Faculty Publications

Anaerobic metabolism is recruitedin vertebrates under conditions of intense exercise or lowered environmental oxygen availability (hypoxia), typically resulting in the accumulation of lactate in blood and tissues. Lactate will be cleared over time after the reoxygenation of tissues, eventually returning to control levels. Here, we present a laboratory exercise developed as part of an upper-level vertebrate physiology class that demonstrates the effects of exercise and hypoxia exposure on blood lactate in fish and the subsequent decrease in lactate during recovery. Typically, the results obtained by students demonstrate that both treatments cause significant increases in blood lactate concentrations (two to three …

Functional Differences Within A Guild Of Tropical Mammalian Frugivores, Jedidiah F. Brodie, Olga E. Helmy, Warren Y. Brockelman, John L. Maron

Biological Sciences Faculty Publications

Many plants interact with groups of mutualist pollinators and seed dispersers. A key issue for both basic ecology and conservation is whether the different species within these guilds of mutualist animals are functionally equivalent. Comparing the relative effects of sympatric mutualists is important for understanding the evolution of multispecies mutualisms and for predicting mutualism stability in the face of anthropogenic change. However, empirical comparisons of the population-level impacts of mutualist animals on their host plant are rare, particularly for seed dispersal mutualisms in species-rich ecosystems. We compared the influence of three seed-dispersing tropical mammals, lar gibbons (Hylobates lar), …

Landscape Genomics And Biased Fst Approaches Reveal Single Nucleotide Polymorphisms Under Selection In Goat Breeds Of North-East Mediterranean, Lorraine Pariset, Stephane Joost, Paolo Ajmone Marsan, Alessio Valentini, Econogene Consortium

Biological Sciences Faculty Publications

Background: In this study we compare outlier loci detected using a F_st based method with those identified by a recently described method based on spatial analysis (SAM). We tested a panel of single nucleotide polymorphisms (SNPs) previously genotyped in individuals of goat breeds of southern areas of the Mediterranean basin (Italy, Greece and Albania). We evaluate how the SAM method performs with SNPs, which are increasingly employed due to their high number, low cost and easy of scoring.

Results: The combined use of the two outlier detection approaches, never tested before using SNP polymorphisms, resulted in the …

A Preliminary Study Of The Diversity And Temporal Patterns Of Abundance Of Tachinidae In Southwestern Ohio, Diego J. Inclán, John O. Stireman Iii

Biological Sciences Faculty Publications

Although tachinids are one of the most diverse families of Diptera (Irwin et al. 2003) and represent the largest group of non-hymenopteran parasitoids (Belshaw 1994), the ecology of most species in the family is poorly known. Most of the studies that have focused on tachinids are related to taxonomic descriptions. Currently, our knowledge is very limited in terms of the diversity and distribution of populations across time and space, especially in the Nearctic and Neotropical Regions (Stireman 2008). There have been a number of recent studies focused on diversity and temporal distributions of tachinids in the Palaearctic Region such as …

Ecological Specialization In A Spatially Structured Population Of The Thermophilic Cyanobacterium Mastigocladus Laminosus, Scott R. Miller, Carin Williams, Aaron L. Strong, Darla Carvey

Biological Sciences Faculty Publications

Laboratory evolution experiments suggest the potential for microbial populations to contribute significant ecological variation to ecosystems, yet the functional importance of genetic diversity within natural populations of microorganisms is largely unknown. Here, we investigated the distribution of genetic and phenotypic variation for a population of the cyanobacterium Mastigocladus laminosus distributed along the temperature gradient of White Creek, Yellowstone NP. A total of 153 laboratory strains were directly isolated from five sites with mean annual temperatures ranging between 39 and 54 C. Genetic characterization at four nitrogen metabolism genes identified 15 closely related lineages in the population sample. These lineages were …

Randomization And In Vivo Selection Reveal A Ggrg Motif Essential For Packaging Human Immunodeficiency Virus Type 2 Rna, Tayyba T. Baig, Jean-Marc Lanchy, J. Stephen Lodmell

Biological Sciences Faculty Publications

The packaging signal (psi) of human immunodeficiency virus type 2 (HIV-2) is present in the 5' noncoding region of RNA and contains a 10-nucleotide palindrome (pal; 5'-392-GGAGUGCUCC) located upstream of the dimerization signal stem-loop 1 (SL1). pal has been shown to be functionally important in vitro and in vivo. We previously showed that the 3' side of pal (GCUCC-3') is involved in base-pairing interactions with a sequence downstream of SL1 to make an extended SL1, which is important for replication in vivo and the regulation of dimerization in vitro. However, the role of the 5' side of pal (5'-GGAGU) was …

Scientific Components Of Dna Evidence: Molecular Biology And Population Genetics, Dan E. Krane

Biological Sciences Faculty Publications

No abstract provided.

Isolation Of Fungi From Lake Vostok Accretion Ice, Scott O. Rogers, Tom D'Elia, Ram Veerapaneni, Vincent Theraisnathan

Biological Sciences Faculty Publications

Here we report the characterization of fungi from 10 accretion ice sections (3300-5100 y old) as well as two deep glacial ice sections that are close to the bottom of the glacier (1 000 000-2 000 000 y old) from the Vostok, Antarctica, 5G ice core. Fungi were characterized by fluorescence microscopy culturing and sequence analyses of ribosomal DNA internal transcribed spacers. A total of 270 fungal colonies were cultured from the accretion ice of subglacial Lake Vostok and an additional 14 from the glacial ice immediately above the accretion ice. Mean concentrations were 0-4.42 cells mL-1 ice meltwater of …

Water Availability Directly Determines Per Capita Consumption At Two Trophic Levels, Kevin E. Mccluney, John L. Sabo

Biological Sciences Faculty Publications

Community ecology has long focused on energy and nutrients as currencies of species interactions. Evidence from physiological ecology and recent studies suggest that in terrestrial systems, water may influence animal behavior and global patterns of species richness. Despite these observations, water has received little attention as a currency directly influencing animal species interactions. Here, we show that the per capita interaction strength between predatory wolf spiders and their primary prey, field crickets, is strong (0.266) when predators and prey are maintained in ambient dry conditions, but is near zero (0.001) when water is provided ad libitum. Moreover, crickets consume 31-fold …

Species Richness And Host Associations Of Lepidoptera-Attacking Tachinidae In The Northeast Ecuadorian Andes, John O. Stireman Iii, Harold F. Greeney, Lee A. Dyer

Biological Sciences Faculty Publications

Most of the unknown biological diversity of macro-organisms remaining to be discovered and described lies in the tropical regions of the world and consists primarily of insects. Those insects with parasitoid lifestyles constitute a significant portion of insect diversity, yet parasitoids are among the most poorly known of major insect guilds in the humid tropics. Here we describe and analyze the richness of one diverse taxon of parasitoids, flies in the family Tachinidae, reared from Lepidoptera as part of a biological survey of Lepidoptera and their parasitoids in one mid-elevation (2000 m) area in the northeast Ecuadorian Andes. One hundred …

Tthe Immature Stages And Natural History Of Antirrhea Adoptiva Porphyrosticta (Watkins, 1928) In Eastern Ecuador (Lepidoptera, Nymphalidae, Morphinae), Harold F. Greeney, Philip J. Devries, Carla M. Penz, Rafael B. Granizo-T, Heidi Connahs, John O. Stireman Iii, Thomas R. Walla, Lee A. Dyer

Biological Sciences Faculty Publications

Here we describe the immature stages and ecological associations of Antirrhea adoptiva porphyrosticta Watkins, 1928 (Lepidoptera:Nymphalidae:Morphinae). The cloud forest bamboo, Chusquea scandens Kunth (Bambusoidea: Poaceae), serves as the larval food plant for this butterfly in eastern Ecuador, the first hostplant record for Antirrhea outside the family Arecaceae. The larvae of A. adoptiva porphyrosticta are superficially similar to those of other Antirrhea species. We also provide observations on adult and larval behavior. Caterpillars of this butterfly species are parasitized by tachinid flies, as well as by Ichneumonidae and a newly described braconid wasp.

Habitat Variation Among Aquatic Gastropod Assemblages Of Indiana, U.S.A., Mark Pyron, Jayson Beugly, Matthew Spielman, Jennifer Pritchett, Stephen J. Jacquemin

Biological Sciences Faculty Publications

We collected aquatic gastropods at 137 sites in lakes and streams of Indiana and tested for patterns of assemblages with environmental variables. The survey resulted in 32 species with a mean of 2.8 species at each site, and a mean abundance at each site of 144 individuals. Nonmetric multidimensional scaling (NMS) multivariate analyses resulted in watershed drainage area, water conductivity, substrate category frequency, and dissolved oxygen as significant correlates of gastropod assemblage structure. Gastropod assemblages of lakes were not significantly different than assemblages of streams in the ordination. Prosobranch taxa occurred in higher abundances than pulmonate taxa at sites with …

Phytoplankton Blooms: Their Occurence And Composition Within Virginia's Tidal Tributaries, Harold G. Marshall, Todd A. Egerton

Biological Sciences Faculty Publications

Sporadic algal bloom development within a 10 year monitoring program in Virginia tidal tributaries of Chesapeake Bay is reviewed. These blooms were common events, characteristically producing a color signature to the surface water, typically short lived, occurring mainly from spring into autumn throughout different salinity regions of these rivers, and were produced primarily by dinoflagellates. The abundance threshold levels that would identify bloom status from a non-bloom presence were species specific, varied with the taxon's cell size, and ranged from ca. 10 to 10(4) cells mL(-1). Among the most consistent sporadic bloom producers were the dinoflagellates Akashiwo sanguinea, Cochlodinium …

Floral Thermogenesis Of Three Species Of Hydnora (Hydnoraceae) In Africa, Roger S. Seymour, Erika Maass, Jay F. Bolin

Biological Sciences Faculty Publications

Background and Aims: Floral thermogenesis occurs in at least 12 families of ancient seed plants. Some species show very high rates of respiration through the alternative pathway, and some are thermoregulatory, with increasing respiration at decreasing ambient temperature. This study assesses the intensity and regulation of respiration in three species of African Hydnora that represent the Hydnoraceae, an unusual family of holoparasitic plants from arid environments.

Methods: Long-term respirometry (CO₂ production) and thermometry were carried out on intact flowers of H. africana, H. abyssinica and H. esculenta in the field, and short-term measurements were made on floral parts …

Results From A Mathematical Model For Human Monocytic Ehrlichiosis, H. Gaff, L. Gross, E. Schaefer

Biological Sciences Faculty Publications

Human monocytic ehrlichiosis (Ehrlichia chaffeensis), HME, is a tick-transmitted, rickettsial disease that has recently increased substantially in the USA from 142 reported cases in 2001 to 506 reported cases in 2005 [1,2]. There have been increasing surveys of tick populations over the past 10 years that have in turn supported the development of models for tick-borne disease transmission. Resulting HME models [3] suggest the importance of metapopulation structures, landscape environment parameters and periodic climatic effects in predicting the dynamics of HME transmission and the efficacy of control efforts, such as the reduction of the tick population through acaricide …

Regional Characterisation Of Hard-Bottom Nursery Habitat For Juvenile Caribbean Spiny Lobster (Panulirus Argus) Using Rapid Assessment Techniques, Rodney D. Bertelsen, Mark J. Butler Iv, William F. Herrnkind, John H. Hunt

Biological Sciences Faculty Publications

Shallow, hard-bottom habitat constitutes approximately 30% of the coastal waters of south Florida, United States, yet it is a chronically understudied feature of the marine seascape in this region. In this study, we characterised the general biogeographic and structural features of shallow benthic hard-bottom communities in the Florida Keys, and related those to the abundance of juvenile Caribbean spiny lobster (Panulirus argus), the target of one of Florida's most economically valuable fisheries. We used rapid assessment techniques to survey more than 100 hard-bottom sites in the Florida Keys to estimate the percentage bottom coverage of vegetation (seagrass and …

Fluctuating Asymmetry In Elk Cervus Elaphus Antlers Is Unrelated To Environmental Conditions In The Greater Yellowstone Ecosystem, Scott L. Eggeman, Mark Hebblewhite, Julie Cunningham, Ken Hamlin

Biological Sciences Faculty Publications

Fluctuating asymmetry (FA) is a measure of the deviation from perfect bilateral symmetry, and has been used across mammals as a reliable indicator of environmental stress during growth and development. Antler size and symmetry can be an indicator of individual fitness and social rank among ungulates such as the North American elk Cervus elaphus. When environmental conditions are favourable, ungulates allocate additional resources to antler development to increase secondary sexual traits and enhance reproduction. We tested whether there was an appreciable change in antler length and the number of points as extreme climatic conditions (e.g. heavy snow and drought) …

Function, Regulation, And Transcriptional Organization Of The Hemin Utilization Locus Of Bartonella Quintana, Nermi L. Parrow, Jasmin Abbott, Amanda R. Lockwood, James M. Battisti, Michael F. Minnick

Biological Sciences Faculty Publications

Bartonella quintana is a gram-negative agent of trench fever, chronic bacteremia, endocarditis, and bacillary angiomatosis in humans. B. quintana has the highest known hemin requirement among bacteria, but the mechanisms of hemin acquisition are poorly defined. Genomic analyses revealed a potential locus dedicated to hemin utilization (hut) encoding a putative hemin receptor, HutA; a TonB-like energy transducer; an ABC transport system comprised of three proteins, HutB, HutC, and HmuV; and a hemin degradation/storage enzyme, HemS. Complementation analyses with Escherichia coli hemA show that HutA functions as a hemin receptor, and complementation analyses with E. coli hemA tonB indicate that HutA …

Potential Effects Of Catastrophic Cyanobacteria Blooms On Caribbean Spiny Lobster Population Dynamics In Florida Bay Usa, Donald C. Behringer, Mark J. Butler Iv

Biological Sciences Faculty Publications

No abstract provided.

Genetic Variation At Hair Length Candidate Genes In Elephants And The Extinct Woolly Mammoth, Alfred L. Roca, Yasuko Ishida, Nikolaidis Sergios, Sergios-Orestis Kolokotronis, Stephen Fratpietro, Kristin Stewardson, Shannon Hensley, Michele Tisdale, Gennady Boeskorov, Alex D. Greenwood

Biological Sciences Faculty Publications

Background: Like humans, the living elephants are unusual among mammals in being sparsely covered with hair. Relative to extant elephants, the extinct woolly mammoth, Mammuthus primigenius, had a dense hair cover and extremely long hair, which likely were adaptations to its subarctic habitat. The fibroblast growth factor 5 (FGF5) gene affects hair length in a diverse set of mammalian species. Mutations in FGF5 lead to recessive long hair phenotypes in mice, dogs, and cats; and the gene has been implicated in hair length variation in rabbits. Thus, FGF5 represents a leading candidate gene for the phenotypic differences in hair length …

Growth And Survival In A Northern Population Of Hispid Cotton Rats, Heather A. Green, Robert K. Rose

Biological Sciences Faculty Publications

Using data from a 28-month capture–mark–recapture study that included 3 winters, we compared rates of body growth and survival for a population of hispid cotton rats (Sigmodon hispidus) in eastern Virginia with another marginal population in eastern Kansas, and where possible, with southern populations in coastal Texas and central Florida. Patterns of seasonal growth were similar in Virginia and Kansas, being low, often near 0, in winter but moderate in other seasons, unlike the uniform seasonal growth rates in Texas. Survival rates were similar between the sexes in both Virginia and Kansas but the overall monthly survival rate …

Role Of Accelerated Segment Switch In Exons To Alter Targeting (Asset) In The Molecular Evolution Of Snake Venom Proteins, Robin Doley, Stephen P. Mackessy, R. Manjunatha Kini

Biological Sciences Faculty Publications

BACKGROUND: Snake venom toxins evolve more rapidly than other proteins through accelerated changes in the protein coding regions. Previously we have shown that accelerated segment switch in exons to alter targeting (ASSET) might play an important role in its functional evolution of viperid three-finger toxins. In this phenomenon, short sequences in exons are radically changed to unrelated sequences and hence affect the folding and functional properties of the toxins.

RESULTS: Here we analyzed other snake venom protein families to elucidate the role of ASSET in their functional evolution. ASSET appears to be involved in the functional evolution of three-finger toxins …

Patterns Of Spiny Lobster (Panulirus Argus) Postlarval Recruitment In The Carribbean: A Crtr Project, Mark J. Butler Iv, Angela M. Mojica, Eloy Sosa-Cordero, Marines Millet, Paul Sanchez-Navarro, Miguel A. Maldonado, Juan Posada, Bladimir Rodriguez, Carlos M. Rivas, Adrian Oviedo, Marcio Arrone, Martha Prada, Nick Bach, Nilda Jimenez, Maria Del Carmen Garcia-Rivas, Kirah Forman, Donald C. Behringer Jr., Thomas Matthews, Claire Paris, Robert Cowen

Biological Sciences Faculty Publications

As part of the Coral Reef Targeted Research (CRTR) Program, a partnership between the Global Environment Facility and the World Bank, our research team examined the recruitment patterns of Caribbean spiny lobster (Panulirus argus) postlarvae among regions in the Caribbean, with a particular focus on Mesoamerica. Our goal was to collect comparable information on postlarval supply among regions and to provide data to test predictions of connectivity generated from a coupled biophysical oceanographic model of lobster larval dispersal. Here we present the results of the postlarval recruitment monitoring program. We monitored the catch of postlarvae on Witham-style collectors …

Dc Electrokinetic Transport Of Cylindrical Cells In Straight Microchannels, Ye Ai, Ali Beskok, David T. Gauthier, Sang W. Joo, Shizhi Qian

Biological Sciences Faculty Publications

Electrokinetic transport of cylindrical cells under dc electric fields in a straight microfluidic channel is experimentally and numerically investigated with emphasis on the dielectrophoretic (DEP) effect on their orientation variations. A two-dimensional multiphysics model, composed of the Navier-Stokes equations for the fluid flow and the Laplace equation for the electric potential defined in an arbitrary Lagrangian-Eulerian framework, is employed to capture the transient electrokinetic motion of cylindrical cells. The numerical predictions of the particle transport are in quantitative agreement with the obtained experimental results, suggesting that the DEP effect should be taken into account to study the electrokinetic transport of …

Is Seagrass An Important Nursery Habitat For The Caribbean Spiny Lobster, Panulirus Argus, In Florida?, Donald C. Behringer, Mark J. Butler Iv, William Herrnkind, John H. Hunt, Charles A. Acosta, William C. Sharp

Biological Sciences Faculty Publications

Caribbean spiny lobster (Panulirus argus) settle preferentially in macroalgal-covered hard-bottom habitat, but seagrass is more prevalent in Florida (United States) and the Caribbean, so even low settlement of lobsters within seagrass could contribute substantially to recruitment if post-settlement survival and growth were high. We tested the role of seagrass and hard-bottom habitats for P. argus recruitment in three ways. We first explored possible density-dependent regulation of early benthic juvenile lobster survival within cages deployed in seagrass and hard-bottom habitats. Second, we compared settlement and survival of P. argus in both habitats, by comparing the recovery of microwire-tagged early …

Phylogeny, Adaptive Radiation, And Historical Biogeography In Bromeliaceae: Insights From An Eight-Locus Plastid Phylogeny, Thomas J. Givnish, Michael H. J. Barfuss, Benjamin Van Ee, Ricarda Riina, Katharina Schulte, Ralf Horres, Philip A. Gonsiska, Rachel S. Jabaily, Darren M. Crayn, J. Andrew Smith

Biological Sciences Faculty Publications

Premise: Bromeliaceae form a large, ecologically diverse family of angiosperms native to the New World. We use a bromeliad phylogeny based on eight plastid regions to analyze relationships within the family, test a new, eight-subfamily classification, infer the chronology of bromeliad evolution and invasion of different regions, and provide the basis for future analyses of trait evolution and rates of diversification.

Methods: We employed maximum-parsimony, maximum-likelihood, and Bayesian approaches to analyze 9341 aligned bases for four outgroups and 90 bromeliad species representing 46 of 58 described genera. We calibrate the resulting phylogeny against time using penalized likelihood applied …

Spatial And Temporal Dynamics Of Habitat Selection Across Canopy Gradients Generates Patterns Of Species Richness And Composition In Aquatic Beetles, Christopher A. Binkley, William J. Resetarits Jr.

Biological Sciences Faculty Publications

1. Colonisation is a critical ecological process influencing both population and community level dynamics by connecting spatially discrete habitat patches. How communities respond to both natural and anthropogenic disturbances, furthermore, requires a basic understanding of how any environmental change modifies colonisation rates. For example, disturbance-induced shifts in the quantity of forest cover surrounding aquatic habitats have been associated with the distribution and abundance of numerous aquatic taxa. However, the mechanisms generating these broad and repeatable field patterns are unclear.

2. Such patterns of diversity could result from differential spatial mortality post colonisation, or from colonisation alone if species select sites …

Peripheral Dendritic Cells Are Essential For Both The Innate And Adaptive Antiviral Immune Responses In The Central Nervous System, Christina D. Steel, Suzanna M. Hahto, Richard P. Ciavarra

Biological Sciences Faculty Publications

Intranasal application of vesicular stomatitis virus (VSV) causes acute infection of the central nervous system (CNS). However, VSV encephalitis is not invariably fatal, suggesting that the CNS may contain a professional antigen-presenting cell (APC) capable of inducing or propagating a protective antiviral immune response. To examine this possibility, we first characterized the cellular elements that infiltrate the brain as well as the activation status of resident microglia in the brains of normal and transgenic mice acutely ablated of peripheral dendritic cells (DCs) in vivo. VSV encephalitis was characterized by a pronounced infiltrate of myeloid cells (CD45^highCD11b^{+ …}

The Effects Of Climate Change On Biodiversity: Pressing Issues And Research Priorities, Friedhelm Krupp, Lytton J. Musselman, Mohammed M.A. Kotb, Ilka Weidig

Biological Sciences Faculty Publications

No abstract provided.