Life Sciences Commons^™

Case Analysis: A Tool For Teaching Research Ethics In Science And Engineering For Graduate Students, Didier Valdes, Erika Jaramillo Giraldo, Jorge Ferrer, William J. Frey

Ethics in Science and Engineering National Clearinghouse

No abstract provided.

Early Rearing Experience, Hypothalamic-Pituitary-Adrenal (Hpa) Activity, And Serotonin Transporter Genotype: Influences On The Development Of Anxiety In Infant Rhesus Monkeys (Macaca Mulatta), Amanda Dettmer

Open Access Dissertations

A gene x environment interaction exists in the expression of anxiety for both human and nonhuman primates, such that individuals who are carriers of the (s) allele of the serotonin transporter genotype ( 5-HTT LPR) and exposed to early life stress are more at risk for exhibiting anxiety. The hypothalamic-pituitary-adrenal (HPA) axis has also been implicated in anxiety disorders but the relationship between early life/genotype, HPA activity, and anxiety is not well understood. Further, studies linking the HPA axis to anxiety have relied on "point" samples (blood and salivary cortisol) which reflect moments in time rather than long-term activity. The …

Engineering The Nanoparticle Surface For Protein Recognition And Applications, Mrinmoy De

Open Access Dissertations

Proteins and nanoparticles (NPs) provide a promising platform for supramolecular interaction. We are currently exploring both fundamental and applied aspects of this interaction. On the fundamental side, we have fabricated a series of water-soluble anionic and cationic NPs to interact with cationic and anionic proteins respectively. A Varity of studies such as, activity assay, fluorescence titration, isothermal titration calorimetry etc. were carried out to quantify the binding properties of these functional NPs with those proteins. Those studies reveal the prospect of tuning the affinity between the nanoparticles and proteins by the surface modification. On the application side, we have used …

Delayed Anesthetic Preconditioning And Metallothioneins I+Ii: Novel Mediators Of Anesthetic-Induced Protection, Scott David Edmands

Open Access Dissertations

Ischemic injury is a common and debilitating outcome of natural illness and as a complication of commonly performed medical procedures. Whereas naturally occurring ischemic insults are often the result of unpredictable events, such as in the case of stroke or heart attack, the risk of operative and perioperative ischemia is somewhat better characterized in the clinical setting. Given the prevalence and severity of outcomes in ischemic injury, there is significant interest in developing better pharmacological and procedural approaches to improve patient outcomes. One approach that has shown significant promise in the laboratory setting, particularly in the context of planned medical …

Visuospatial Reasoning In Toddlers: A Correlational Study Of Door Task Performance, Iris Louella Price

Open Access Dissertations

Previous research using violation-of-expectation paradigms suggests that very young infants have a good understanding of unobserved physical events. Yet toddlers appear to lack this knowledge when confronted with the door task, a visuospatial reasoning task which parallels ones used in the habituation/looking time studies. Many studies have been conducted in an effort to determine why toddlers perform poorly on the door task yet the answer remains unclear. The current study used a correlational approach to investigate door task performance from both psychological (executive function), and neuroscience (prefrontal cortex) perspectives. Children between the ages of 2 ½ - 3 years were …

Spatial Ecology, Population Structure, And Conservation Of The Wood Turtle, Glyptemys Insculpta, In Central New England, Michael T. Jones

Open Access Dissertations

Abstract (Summary) Wood turtles ( Glyptemys insculpta ) are of conservation interest rangewide. Anecdotal accounts demonstrate that some populations have been decimated since 1850, and recent studies demonstrate that declines are still underway. From 2004-2008 I investigated the ecology of wood turtles in Massachusetts and New Hampshire. I obtained between one and five years of annual home range data for 150 turtles, and evaluated population structure at 31 sites in five major watersheds. Seasonal floods displaced 7% of wood turtles annually in one watershed, and accounted for elevated mortality. Twelve wood turtles were displaced < 16.8 km, and two were displaced over a 65-foot dam. Several turtles overwintered at their displacement site and two returned successfully, indicating that floods are a mechanism of population connectivity. Several homing turtles ended up in new areas. Turtles occupied stream segments with gradient < 1%, lower than generally available. Agricultural machinery accounted for most observed mortality, followed by automobiles and mammals. Female turtles exhibit smaller home ranges in agricultural areas. Older turtles move farther from the river than do young turtles, possibly reflecting their familiarity with a former landscape. Population density ranged from 0-40.4 turtles/river-kilometer. The highest densities occur in central New Hampshire and lower densities occur in the Housatonic watershed. Population density is negatively correlated with agriculture at both riparian and watershed scales, and responds unimodally to forest cover. Wood turtle populations in western Massachusetts are declining by 6.6-11.2% annually. I estimated ages of turtles by assessing shell-wear rates from photographs. Wood turtles regularly achieve ages over 80 years, and like related species, do not exhibit clear signs of senescence. Old wood turtles are reproductively dominant, and their survival rates are twice as high as young turtles. Carapace scutes appear to require 80 years to become worn. Population modeling indicates that wood turtle populations are declining in New England due to anthropogenic and natural factors. Conservation efforts must address the effects of agriculture on adult survival. Climate change may negatively affect northeastern wood turtles through increased flooding. Populations in mountainous areas may be likely candidates for conservation because they don't occupy prime agricultural land, but may be more susceptible to floods.

Modulation Of Macrophage Responses To Borrelia Burgdorferi In Acute Murine Lyme Carditis, Chris Martin Olson

Open Access Dissertations

The Lyme disease spirochete Borrelia burgdorferi is the only known human pathogen that directly activates invariant natural killer T (iNKT) cells. The number and activation kinetics of iNKT cells vary greatly among different strains of mice. Here, we report the role of the iNKT cell response in the pathogenesis of Lyme disease using C57BL/6 (B6) mice, a strain with optimal iNKT cell activation that is resistant to the development of spirochetal-induced inflammation. During experimental infection of B6 mice with B. burgdorferi , iNKT cells localize to the inflamed heart where they are activated by CD1d-expressing macrophages. Activation of iNKT cells …

The Conformational Gymnastics Of The Escherichia Coli Seca Molecular Machine And Its Interactions With Signal Sequences, Jenny Lynn Maki

Open Access Dissertations

Protein secretion is a selective and regulated process that is essential in all organisms. In bacteria the preprotein translocase SecA, either free in the cytosol or associated with the SecYEG translocon, recognizes and binds most post-translational secretory proteins containing an N-terminal signal sequence. In Gram-negative bacteria, the molecular chaperone SecB binds many of the preproteins to keep them in a translocation-competent state. Subsequently, SecB delivers the preproteins to the translocon-associated SecA, which binds the signal sequence and also interacts with mature regions of the preprotein. After the preprotein/SecA/SecYEG complex has formed, the energy derived from ATP hydrolysis by SecA coupled …

Leaf Herbivory Increases Floral Fragrance In Male But Not Female Cucurbita Peposubsp.Texana (Cucurbitaceae) Flowers, Nina Theis, Karen Kesler, Lynn Adler

Lynn Adler

Mutualisms are key interactions that affect population dynamics and structure communities, but the extent to which mutualists can attract potential partners may depend on community context. Many studies have shown that leaf herbivory reduces pollinator visitation and have focused on reduced fl oral visual display and rewards as potential mechanisms. However, olfactory display plays a critical role in mediating interactions between plants, herbivores, and pollinators. We simulated leaf damage in Cucurbita pepo subsp. texana and measured fragrance emission and other fl oral characters of both male and female fl owers. Contrary to our expectations, damage increased fragrance production, but only …

Role-Play Scenarios For Teaching Responsible Conduct Of Research: Assessment Of Outcomes, Stephanie N. Seiler, Michael C. Loui, Kerri L. Kristich, Kyoung Jin Kim, C. K. Gunsalus, Bradley J. Brummel

Ethics in Science and Engineering National Clearinghouse

No abstract provided.

Responsible Conduct Of Research Role-Plays: Conflict Of Interest, C. K. Gunsalus, M. C. Loui, C. K. Gunsalus, M. C. Loui, And Their Students At The University Of Illinois At Urbana-Champaign

Ethics in Science and Engineering National Clearinghouse

This faculty adviser in this role-play has a major conflict of interest, which puts the student in an awkward situation. If the conflict oversight committee hasn’t contacted the student already (an unfortunately common situation), they should have. In an ideal situation, every student affected by a potential conflict of interest should have some written guidance about what to expect and how to get advice if concerns arise.

One useful step is to find out if there are any written policies or guidelines about what students can expect in situations like this: for example, is there a meeting annually or every …

Genomic Organization And Classification Of The Bovine Wc1 Genes And Expression By Peripheral Blood Gamma Delta T Cells, Carolyn Ta Herzig, Cynthia Baldwin

Cynthia Baldwin

Background: WC1 co-receptors are group B scavenger receptor cysteine-rich molecules that are found exclusively on γδT cells and are thought to be encoded by a multi-gene family. Previous studies have shown γδT cells that respond to a particular stimulus have unique WC1 molecules expressed. Prior to the onset of the studies described here only one full-length WC1 nucleotide sequence was publicly available, though three WC1 molecules had been distinguished based on monoclonal antibody reactivity. Furthermore, the number of WC1 genes found in the bovine genome and their sequences had not yet been resolved. Results: By annotating the bovine genome Btau_3.1 …

A Toc159 Import Receptor Mutant, Defective In Hydrolysis Of Gtp, Supports Preprotein Import Into Chloroplasts, Birgit Agne, Sibylle Infanger, Fei Wang, Valère Hofstetter, Gwendoline Rahim, Meryll Martin, Dong Wook Lee, Inhwan Hwang, Danny Schnell, Felix Kessler

Danny Schnell

The heterotrimeric Toc core complex of the chloroplast protein import apparatus contains two GTPases, Toc159 and Toc34, together with the protein-conducting channel Toc75. Toc159 and Toc34 are exposed at the chloroplast surface and function in preprotein recognition. Together, they have been shown to facilitate the import of photosynthetic proteins into chloroplasts in Arabidopsis. Consequently, the ppi2 mutant lacking atToc159 has a non-photosynthetic albino phenotype. Previous mutations in the conserved G1 and G3 GTPase motifs abolished the function of Toc159 in vivo by disrupting targeting of the receptor to chloroplasts. Here, we demonstrate that a mutant in a conserved G1 lysine …

Evaluation Of Wintergreen Oil And D-Limonene For Controlling Nematodes In Golf Greens 2008, Robert L. Wick, D. Babineau

Robert L. Wick

No abstract provided.

Coupling A Genome-Scale Metabolic Model With A Reactive Transport Model To Describe In Situ Uranium Bioremediation, Derek Lovley, Timothy D. Scheibe, Radhakrishnan Mahadeven, Yilin Fang, Srinath Garg, Philip E. Long

Derek Lovley

The increasing availability of the genome sequences of microorganisms involved in important bioremediation processes makes it feasible to consider developing genome-scale models that can aid in predicting the likely outcome of potential subsurface bioremediation strategies. Previous studies of the in situ bioremediation of uranium-contaminated groundwater have demonstrated that Geobacter species are often the dominant members of the groundwater community during active bioremediation and the primary organisms catalysing U(VI) reduction. Therefore, a genome-scale, constraint-based model of the metabolism of Geobacter sulfurreducens was coupled with the reactive transport model HYDROGEOCHEM in an attempt to model in situ uranium bioremediation. In order to …

Future Shock From The Microbe Electric (In Crystal Ball), Derek Lovley

Derek Lovley

No abstract provided.

Beneficial Effect Of Young Oocytes For Rabbit Somatic Cell Nuclear Transfer, F. Du, J. Xu, J. Zhang, S. Gao, M.G. Carter, C. He, L.Y. Sung, S. Chaubal, Rafael Fissore, X.C. Tian, X. Yang, Y.E. Chen

Rafael Fissore

This study was designed to examine the effect of the age of rabbit oocytes on the developmental potential of cloned embryos. The metaphase II oocytes used for nuclear transfer (NT) were collected at 10, 12, 14, and 16 h post-hCG injection (hpi). The total number of oocytes collected per donor (21.4-23.7) at 12 to 16 hpi was similar, but significantly higher than that collected at 10 hpi (16.2). Additionally, a significant improvement in blastocyst development was achieved with embryos generated by electrically mediated cell fusion (56.0%), compared to those from nuclear injection (13.1 %) (Experiment 1). Markedly higher blastocyst development …

Evaluation Of Neo-Tec S.O.® For Controlling Nematodes In Golf Greens 2008, Robert L. Wick, D. Babineau

Robert L. Wick

No abstract provided.

Evaluation Of Naturecur® For Controlling Nematodes In Golf Greens 2008, Robert L. Wick, D. Babineau

Robert L. Wick

No abstract provided.

Evaluation Of Ditera For Controlling Nematodes In Golf Greens 2008, Robert L. Wick, D. Babineau

Robert L. Wick

No abstract provided.

Hey Congress! Newest Farmers Union Chapter Coming, Madeleine K. Charney

Madeleine K. Charney

New England farmers' needs are addressed through a new chapter of the National Farmers Union.

Hey Congress! Newest Farmers Union Chapter Coming, Madeleine K. Charney

University Libraries Publication Series

New England farmers' needs are addressed through a new chapter of the National Farmers Union.

Federal Register: National Science Foundation, Responsible Conduct Of Research, National Science Foundation

Ethics in Science and Engineering National Clearinghouse

The National Science Foundation (NSF) is soliciting public comment on the agency’s proposed implementation of Section 7009 of the America Creating Opportunities to Meaningfully Promote Excellence in Technology, Education, and Science (COMPETES) Act (42 U.S.C. 1862o–1). This section of the Act requires that ‘‘each institution that applies for financial assistance from the Foundation for science and engineering research or education describe in its grant proposal a plan to provide appropriate training and oversight in the responsible and ethical conduct of research to undergraduate students, graduate students, and postdoctoral researchers participating in the proposed research project.’’

[Abstract by author]

Ethical Issues In Peer Review Of Research, Michael C. Loui

Ethics in Science and Engineering National Clearinghouse

No abstract provided.

Exploring The Transcriptional Landscape Of Plant Circadian Rhythms Using Genome Tiling Arrays, Samuel P. Hazen, Felix Naef, Tom Quisel, Joshua M. Gendron, Huaming Chen, Joseph R. Ecker, Justin O. Borevitz, Steve A. Kay

Samuel P Hazen

Background - Organisms are able to anticipate changes in the daily environment with an internal oscillator know as the circadian clock. Transcription is an important mechanism in maintaining these oscillations. Here we explore, using whole genome tiling arrays, the extent of rhythmic expression patterns genome-wide, with an unbiased analysis of coding and noncoding regions of the Arabidopsis genome. Results - As in previous studies, we detected a circadian rhythm for approximately 25% of the protein coding genes in the genome. With an unbiased interrogation of the genome, extensive rhythmic introns were detected predominantly in phase with adjacent rhythmic exons, creating …

Annotation And Classification Of The Bovine T Cell Receptor Delta Genes, Carolyn Ta Herzig, Marie-Paule Lefranc, Cynthia Baldwin

Cynthia Baldwin

Abstract Background: gδ T cells differ from ab T cells with regard to the types of antigen with which their T cell receptors interact; gδ T cell antigens are not necessarily peptides nor are they presented on MHC. Cattle are considered a “gδ T cell high” species indicating they have an increased proportion of gδ T cells in circulation relative to that in “gδ T cell low” species such as humans and mice. Prior to the onset of the studies described here, there was limited information regarding the genes that code for the T cell receptor delta chains of this …

Factors Influencing The Stability Of Carotenoids In Oil-In-Water Emulsions, Caitlin Suzanne Boon

Doctoral Dissertations 1896 - February 2014

Lycopene has recently received interest as an antioxidant in human tissues. These same antioxidant properties present challenges in preventing oxidative degradation within food products. In this research, degradation of lycopene in model emulsion systems was examined to better understand the chemical stability of this potential functional food ingredient.

Lycopene in corn oil or hexadecane was used to make oil-in-water emulsions using small molecule surfactants. Emulsion color loss was used to estimate lycopene loss and was monitored using an integrating sphere. Lipid hydroperoxide and hexanal formation was used to monitor the development of lipid oxidation.

Oxidation and color loss were found …

Intrakinetochore Stretch Is Associated With Changes In Kinetochore Phosphorylation And Spindle Assembly Checkpoint Activity, Thomas J. Maresca, E. D. Salmon

Thomas J. Maresca

Cells have evolved a signaling pathway called the spindle assembly checkpoint (SAC) to increase the fidelity of chromosome segregation by generating a “wait anaphase” signal until all chromosomes are properly aligned within the mitotic spindle. It has been proposed that tension generated by the stretch of the centromeric chromatin of bioriented chromosomes stabilizes kinetochore microtubule attachments and turns off SAC activity. Although biorientation clearly causes stretching of the centromeric chromatin, it is unclear whether the kinetochore is also stretched. To test whether intrakinetochore stretch occurs and is involved in SAC regulation, we developed a Drosophila melanogaster S2 cell line expressing …

Responsible Conduct Of Research Role-Plays: Whistleblowing Data Management, C. K. Gunsalus, M. C. Loui, C. K. Gunsalus, M. C. Loui, And Their Students At The University Of Illinois At Urbana-Champaign

Ethics in Science and Engineering National Clearinghouse

This role-play involves data mismanagement in a research lab. The graduate students suspects that the post-doc fabricated experimental results, which is a form of research misconduct. The realization or suspicion that someone has engaged in research misconduct is one of the most difficult situations researchers face. However, someone who has witnessed misconduct has an obligation to act and report this behavior. Reporting the misconduct, which also known as whistle-blowing, should be done in a cautious and responsible way. Ideally, whistle-blowers should never be afraid to come forward with questions of misconduct, as they should be supported by their institutions and …

Responsible Conduct Of Research Role-Plays: Hazardous Substances, C. K. Gunsalus, M. C. Loui, C. K. Gunsalus, M. C. Loui, And Their Students At The University Of Illinois At Urbana-Champaign

Ethics in Science and Engineering National Clearinghouse

This role-play focuses on the dilemmas in balancing regulatory requirements, personal relationships and a natural reluctance to “cause trouble.” These dilemmas arise in many settings, and can be particularly acute in laboratories that handle hazardous substances because of the serious safety implications of violations. In addition, violations can carry fines and penalties for laboratories and universities where they occur. The worries of the graduate student in the role-play about potential laboratory shut-downs and corresponding research delays are all too real. Specifics of regulations vary according to the materials being handled. The underlying principles regarding human and environmental safety stay the …