Other Computer Engineering Commons^™

Insights Into Cellular Evolution: Temporal Deep Learning Models And Analysis For Cell Image Classification, Xinran Zhao

Master's Theses

Understanding the temporal evolution of cells poses a significant challenge in developmental biology. This study embarks on a comparative analysis of various machine-learning techniques to classify cell colony images across different timestamps, thereby aiming to capture dynamic transitions of cellular states. By performing Transfer Learning with state-of-the-art classification networks, we achieve high accuracy in categorizing single-timestamp images. Furthermore, this research introduces the integration of temporal models, notably LSTM (Long Short Term Memory Network), R-Transformer (Recurrent Neural Network enhanced Transformer) and ViViT (Video Vision Transformer), to undertake this classification task to verify the effectiveness of incorporating temporal features into the classification …

A Study Of Random Partitions Vs. Patient-Based Partitions In Breast Cancer Tumor Detection Using Convolutional Neural Networks, Joshua N. Ramos

Master's Theses

Breast cancer is one of the deadliest cancers for women. In the US, 1 in 8 women will be diagnosed with breast cancer within their lifetimes. Detection and diagnosis play an important role in saving lives. To this end, many classifiers with varying structures have been designed to classify breast cancer histopathological images. However, randomly partitioning data, like many previous works have done, can lead to artificially inflated accuracies and classifiers that do not generalize. Data leakage occurs when researchers assume that every image in a dataset is independent of each other, which is often not the case for medical …

Decentralized Machine Learning On Blockchain: Developing A Federated Learning Based System, Nikhil Sridhar

Master's Theses

Traditional Machine Learning (ML) methods usually rely on a central server to per-
form ML tasks. However, these methods have problems like security risks, data
storage issues, and high computational demands. Federated Learning (FL), on the
other hand, spreads out the ML process. It trains models on local devices and then
combines them centrally. While FL improves computing and customization, it still
faces the same challenges as centralized ML in security and data storage.

This thesis introduces a new approach combining Federated Learning and Decen-
tralized Machine Learning (DML), which operates on an Ethereum Virtual Machine
(EVM) compatible blockchain. The …

Contextually Dynamic Quest Generation Using In-Session Player Information In Mmorpg, Shangwei Lin

Master's Theses

Massively multiplayer online role-playing games (MMORPGs) are one of the most

popular genres in video games that combine massively multiplayer online genres with

role-playing gameplay. MMORPGs’ featured social interaction and forms of level pro-

gression through quest completion are the core for gaining players’ attention. Varied

and challenging quests play an essential part in retaining that attention. However,

well-crafted content takes much longer to develop with human efforts than it does to

consume, and the dominant procedural content generation models for quests suffer

from the drawback of being incompatible with dynamic world changes and the feeling

of repetition over time. …

Strainer: State Transcript Rating For Informed News Entity Retrieval, Thomas M. Gerrity

Master's Theses

Over the past two decades there has been a rapid decline in public oversight of state and local governments. From 2003 to 2014, the number of journalists assigned to cover the proceedings in state houses has declined by more than 30\%. During the same time period, non-profit projects such as Digital Democracy sought to collect and store legislative bill and hearing information on behalf of the public. More recently, AI4Reporters, an offshoot of Digital Democracy, seeks to actively summarize interesting legislative data.

This thesis presents STRAINER, a parallel project with AI4Reporters, as an active data retrieval and filtering system for …

Improving Relation Extraction From Unstructured Genealogical Texts Using Fine-Tuned Transformers, Carloangello Parrolivelli

Master's Theses

Though exploring one’s family lineage through genealogical family trees can be insightful to developing one’s identity, this knowledge is typically held behind closed doors by private companies or require expensive technologies, such as DNA testing, to uncover. With the ever-booming explosion of data on the world wide web, many unstructured text documents, both old and new, are being discovered, written, and processed which contain rich genealogical information. With access to this immense amount of data, however, entails a costly process whereby people, typically volunteers, have to read large amounts of text to find relationships between people. This delays having genealogical …

A Research Framework And Initial Study Of Browser Security For The Visually Impaired, Elaine Lau, Zachary Peterson

Master's Theses

The growth of web-based malware and phishing attacks has catalyzed significant advances in the research and use of interstitial warning pages and modals by a browser prior to loading the content of a suspect site. These warnings commonly use visual cues to attract users' attention, including specialized iconography, color, and an absence of buttons to communicate the importance of the scenario. While the efficacy of visual techniques has improved safety for sighted users, these techniques are unsuitable for blind and visually impaired users. This is likely not due to a lack of interest or technical capability by browser manufactures, where …

An Analysis Of Camera Configurations And Depth Estimation Algorithms For Triple-Camera Computer Vision Systems, Jared Peter-Contesse

Master's Theses

The ability to accurately map and localize relevant objects surrounding a vehicle is an important task for autonomous vehicle systems. Currently, many of the environmental mapping approaches rely on the expensive LiDAR sensor. Researchers have been attempting to transition to cheaper sensors like the camera, but so far, the mapping accuracy of single-camera and dual-camera systems has not matched the accuracy of LiDAR systems. This thesis examines depth estimation algorithms and camera configurations of a triple-camera system to determine if sensor data from an additional perspective will improve the accuracy of camera-based systems. Using a synthetic dataset, the performance of …

Using Pitch Tipping For Baseball Pitch Prediction, Brian Ishii

Master's Theses

Data Analytics and technology have changed baseball as we know it. From the increase in defensive shifts to teams using cameras in the outfield to steal signs, teams will try anything to win. One way to gain an edge in baseball is to figure out what pitches a pitcher will pitch. Pitch prediction is a popular task to try to accomplish with all the data that baseball provides. Most methods involve using situational data like the ball and strike count. In this paper, we try a different method of predicting pitch type by only looking at the pitcher's pose in …

Automating Deep-Sea Video Annotation, Hanson Egbert

Master's Theses

As the world explores opportunities to develop offshore renewable energy capacity, there will be a growing need for pre-construction biological surveys and post-construction monitoring in the challenging marine environment. Underwater video is a powerful tool to facilitate such surveys, but the interpretation of the imagery is costly and time-consuming. Emerging technologies have improved automated analysis of underwater video, but these technologies are not yet accurate or accessible enough for widespread adoption in the scientific community or industries that might benefit from these tools.

To address these challenges, prior research developed a website that allows to: (1) Quickly play and annotate …

Dependencyvis: Helping Developers Visualize Software Dependency Information, Nathan Lui

Master's Theses

The use of dependencies have been increasing in popularity over the past decade, especially as package managers such as JavaScript's npm has made getting these packages a simple command to run. However, while incidents such as the left-pad incident has increased awareness of how vulnerable relying on these packages are, there is still some work to be done when it comes to getting developers to take the extra research step to determine if a package is up to standards. Finding metrics of different packages and comparing them is always a difficult and time consuming task, especially since potential vulnerabilities are …

Bootstrapping Massively Multiplayer Online Role Playing Games, Mitchell Miller

Master's Theses

Massively Multiplayer Online Role Playing Games (MMORPGs) are a prominent genre in today's video game industry with the most popular MMORPGs generating billions of dollars in revenue and attracting millions of players. As they have grown, they have become a major target for both technological research and sociological research. In such research, it is nearly impossible to reach the same player scale from any self-made technology or sociological experiments. This greatly limits the amount of control and topics that can be explored. In an effort to make up a lacking or non-existent player-base for custom-made MMORPG research scenarios A.I. agents, …

Dynamic Procedural Music Generation From Npc Attributes, Megan E. Washburn

Master's Theses

Procedural content generation for video games (PCGG) has seen a steep increase in the past decade, aiming to foster emergent gameplay as well as to address the challenge of producing large amounts of engaging content quickly. Most work in PCGG has been focused on generating art and assets such as levels, textures, and models, or on narrative design to generate storylines and progression paths. Given the difficulty of generating harmonically pleasing and interesting music, procedural music generation for games (PMGG) has not seen as much attention during this time.

Music in video games is essential for establishing developers' intended mood …

Evaluating Creative Choice In K-12 Computer Science Curriculum, Kirsten L. Mork

Master's Theses

Computer Science is an increasingly important topic in K-12 education. Ever since the "computing crisis" of the early 2000s, where enrollment in CS dropped by over half in a five year span, increasing research has gone into improving and broadening enrollment in CS courses. Research shows the importance of introducing CS at a young age and the need for more exposure for younger children and young adults alike in order to work towards equity in the field. While there are many reasons for disinterest in CS courses, studies found one reason young adults do not want to study CS is …

Logging, Visualization, And Analysis Of Network And Power Data Of Iot Devices, Neal Huynh Nguyen

Master's Theses

There are approximately 23.14 billion IoT(Internet of Things) devices currently in use worldwide. This number is projected to grow to over 75 billion by 2025. Despite their ubiquity little is known about the security and privacy implications of IoT devices. Several large-scale attacks against IoT devices have already been recorded.

To help address this knowledge gap, we have collected a year’s worth of network traffic and power data from 16 common IoT devices. From this data, we show that we can identify different smart speakers, like the Echo Dot, from analyzing one minute of power data on a shared power …

Funqual: User-Defined, Statically-Checked Call Graph Constraints In C++, Andrew P. Nelson

Master's Theses

Static analysis tools can aid programmers by reporting potential programming mistakes prior to the execution of a program. Funqual is a static analysis tool that reads C++17 code ``in the wild'' and checks that the function call graph follows a set of rules which can be defined by the user. This sort of analysis can help the programmer to avoid errors such as accidentally calling blocking functions in time-sensitive contexts or accidentally allocating memory in heap-sensitive environments. To accomplish this, we create a type system whereby functions can be given user-defined type qualifiers and where users can define their own …

Towards Autonomous Localization Of An Underwater Drone, Nathan Sfard

Master's Theses

Autonomous vehicle navigation is a complex and challenging task. Land and aerial vehicles often use highly accurate GPS sensors to localize themselves in their environments. These sensors are ineffective in underwater environments due to signal attenuation. Autonomous underwater vehicles utilize one or more of the following approaches for successful localization and navigation: inertial/dead-reckoning, acoustic signals, and geophysical data. This thesis examines autonomous localization in a simulated environment for an OpenROV Underwater Drone using a Kalman Filter. This filter performs state estimation for a dead reckoning system exhibiting an additive error in location measurements. We evaluate the accuracy of this Kalman …

Developing, Evaluating, And Demonstrating An Open Source Gateway And Mobile Application For The Smartfarm Decision Support System, Caleb D. Fink

Master's Theses

The purpose of this research is to design, develop, evaluate, and demonstrate an open source gateway and mobile application for the SmartFarm open source decision support system to improve agricultural stewardship, environmental conservation, and provide farmers with a system that they own. There are very limited options for an open source gateway for collecting data on the farm. The options available are: expensive, require professional maintenance, are not portable between systems, improvements are made only by the manufacturer, limited in customization options, difficult to operate, and data is owned by the company rather than the farmer. The gateway is designed …

Leave The Features: Take The Cannoli, Jonathan Joseph Catanio

Master's Theses

Programming languages like Python, JavaScript, and Ruby are becoming increasingly popular due to their dynamic capabilities. These languages are often much easier to learn than other, statically type checked, languages such as C++ or Rust. Unfortunately, these dynamic languages come at the cost of losing compile-time optimizations. Python is arguably the most popular language for data scientists and researchers in the artificial intelligence and machine learning communities. As this research becomes increasingly popular, and the problems these researchers face become increasingly computationally expensive, questions are being raised about the performance of languages like Python. Language features found in Python, more …

Polycommit: Building Better Habits Through Gamification, Elliot Fiske

Master's Theses

Computer-assisted learning is older than Turing machines, and constantly evolves as technology improves. While some teachers are resistant to using technology in the classroom, “e-learning” techniques are becoming more common in almost every school, from K-12 to universities. As technology becomes more widespread, it becomes crucial to examine the various methodologies of computer-assisted learning and find the techniques that are most effective.

This paper explores the effectiveness of one such methodology, spaced repetition. This technique applies to homework assignments available to students online. We include an exploration of several existing apps that use this technique, and introduce our own novel …

Vehicle Pseudonym Association Attack Model, Pierson Yieh

Master's Theses

With recent advances in technology, Vehicular Ad-hoc Networks (VANETs) have grown in application. One of these areas of application is Vehicle Safety Communication (VSC) technology. VSC technology allows for vehicle-to-vehicle (V2V) and vehicle-to-infrastructure (V2I) communications that enhance vehicle safety and driving experience. However, these newly developing technologies bring with them a concern for the vehicular privacy of drivers. Vehicles already employ the use of pseudonyms, unique identifiers used with signal messages for a limited period of time, to prevent long term tracking. But can attackers still attack vehicular privacy even when vehicles employ a pseudonym change strategy? The major contribution …

Mastering The Game Of Gomoku Without Human Knowledge, Yuan Wang

Master's Theses

Gomoku, also called Five in a row, is one of the earliest checkerboard games invented by humans. For a long time, it has brought countless pleasures to us. We humans, as players, also created a lot of skills in playing it. Scientists normalize and enter these skills into the computer so that the computer knows how to play Gomoku. However, the computer just plays following the pre-entered skills, it doesn’t know how to develop these skills by itself. Inspired by Google’s AlphaGo Zero, in this thesis, by combining the technologies of Monte Carlo Tree Search, Deep Neural Networks, and Reinforcement …

Predicting The Vote Using Legislative Speech, Aditya Budhwar

Master's Theses

As most dedicated observers of voting bodies like the U.S. Supreme Court can attest, it is possible to guess vote outcomes based on statements made during deliberations or questioning by the voting members. In most forms of representative democracy, citizens can actively petition or lobby their representatives, and that often means understanding their intentions to vote for or against an issue of interest. In some U.S. state legislators, professional lobby groups and dedicated press members are highly informed and engaged, but the process is basically closed to ordinary citizens because they do not have enough background and familiarity with the …

Corgi: Compute Oriented Recumbent Generation Infrastructure, Christopher Allen Hunt

Master's Theses

Creating a bicycle with a rideable geometry is more complicated than it may appear, with today’s mainstay designs having evolved through years of iteration. This slow evolution coupled with the bicycle’s intricate mechanical system has lead most builders to base their new geometries off of previous work rather than expand into new design spaces. This crutch can lead to slow bicycle iteration rates, often causing bicycles to all look about the same. To combat this, several bicycle design models have been created over the years, with each attempting to define a bicycle’s handling characteristics given its physical geometry. However, these …

Normalizer: Augmenting Code Clone Detectors Using Source Code Normalization, Kevin Ly

Master's Theses

Code clones are duplicate fragments of code that perform the same task. As software code bases increase in size, the number of code clones also tends to increase. These code clones, possibly created through copy-and-paste methods or unintentional duplication of effort, increase maintenance cost over the lifespan of the software. Code clone detection tools exist to identify clones where a human search would prove unfeasible, however the quality of the clones found may vary. I demonstrate that the performance of such tools can be improved by normalizing the source code before usage. I developed Normalizer, a tool to transform C …

Encouraging Development Of Mobile Applications As A Service To The Community, Vanessa Marie Forney

Master's Theses

The convenience of mobile applications combined with the efficiency and effectiveness provided by technology has contributed to an increased interest in mobile applications. Local groups and non-profit organizations often utilize outdated, manual processes and don’t have the resources or time to look into improving these systems. For Cal Poly students and other members of the community, this means there is an opportunity to apply technical skills and school projects to address these inefficiencies. This work explores whether a better system can be developed to provide the functionality of the existing system and enhance the experience of users through technology, data …

Inducing Emotional Response In Interactive Media, Keenan M. Reimer

Master's Theses

Video games, and entertainment media have been developed for many years, and eliciting emotional experiences is an integral part of that process. Producing and editing game content in order to affect desired emotional experiences can be expensive and cumbersome to developers. This paper presents a study intended to show that such experiences can be affected with simple after-the-fact audio-visual effects. As subjects of the study, participants experience three different emotional states, fear, peace, and none, over three rounds and in three different game environments. They are given a simple narrative in each environment that directs them to gather various objects. …

The Effects Of Latency On 3d Interactive Data Visualizations, Allen Korenevsky

Master's Theses

Interactive data visualizations must respond fluidly to user input to be effective, or so we assume. In fact it is unknown exactly how fast a visualization must run to present every facet within a dataset. An engineering team with limited resources is left with intuition and estimates to determine if their application performs sufficiently well.

This thesis studies how latency affects users' comprehension of data visualizations, specifically 3D geospatial visualizations with large data sets. Subjects used a climate visualization showing temperatures spanning from the 19th to the 21st century to answer multiple choice questions. Metrics like their eye movements, time …

Graph-Based Data Visualization In Virtual Reality: A Comparison Of User Experiences, Paul Andrew Sullivan

Master's Theses

Virtual reality is currently in the spotlight, attracting intense scrutiny by the press, technology companies, and consumers. After twenty years of dormancy, the technology has experienced a renaissance following advancements in both hardware and software. Most of these developments, and thus press attention, have been centered on entertainment. However, if the technology is going to continue to grow, it must be useful in a wide variety of situations. This paper explores the effectiveness of visualizing data in virtual reality in comparison to traditional presentations.

In this thesis, we present an approach to displaying data in a virtual reality environment. We …

Polyfs Visualizer, Paul Martin Fallon

Master's Theses

One of the most important operating system topics, file systems, control how we store and access data and form a key point in a computer scientists understanding of the underlying mechanisms of a computer. However, file systems, with their abstract concepts and lack of concrete learning aids, is a confusing subjects for students. Historically at Cal Poly, the CPE 453 Introduction to Operating Systems has been on of the most failed classes in the computing majors, leading to the need for better teaching and learning tools. Tools allowing students to gain concrete examples of abstract concepts could be used to …