Open Access. Powered by Scholars. Published by Universities.®

Computer Engineering Commons

Open Access. Powered by Scholars. Published by Universities.®

FPGA

All Theses

Publication Year

Articles 1 - 2 of 2

Full-Text Articles in Computer Engineering

Towards Securing Virtualization Using A Reconfigurable Platform, Tushar Janefalkar May 2011

Towards Securing Virtualization Using A Reconfigurable Platform, Tushar Janefalkar

All Theses

Virtualization is no longer limited to main stream processors and servers. Virtualization software for General Purpose Processors (GPP) that allow one Operating System (OS) to run as an application in another OS have become commonplace. To exploit the full potential of the available hardware, virtualization is now prevalent across all systems big and small. Besides GPPs, state-of-the-art embedded processors are now capable of running rich operating systems and their virtualization is now a hot topic of research. However, this technological progress also opens doors for attackers to snoop on data that is not only confined to storage servers but also …


Acceleration Of Biomolecular Simulations Using Fpga-Based Reconfigurable Computing, Ananth Nallamuthu May 2010

Acceleration Of Biomolecular Simulations Using Fpga-Based Reconfigurable Computing, Ananth Nallamuthu

All Theses

A paradigm shift is occurring in the way compute-intensive scientific applications are developed. Thanks to advancements in commercially viable hybrid architectures for High-Performance Computing (HPC), the focus has shifted from improving performance by merely scaling algorithms on von Neumann computing nodes to fully exploiting additional computational capabilities provided by accelerators such as FPGAs (Field Programmable Gate Arrays) and GPGPUs (General Purpose Graphical Processing Units).
Computational chemists use Molecular Dynamics (MD) simulations like LAMMPS (Large Scale Atomic Molecular Massively Parallel Systems) and NAMD (NAnoscale Molecular Dynamics) to simulate biomolecular behaviour such as protein folding and small molecule docking to proteins. MD …