Engineering Commons^™

Interfacial Polymerization For Colorimetric Labeling Of Protein Expression In Cells, Jacob L. Lilly, Phillip R. Sheldon, Liv J. Hoversten, Gabriela Romero, Vivek Balasubramaniam, Brad J. Berron

Chemical and Materials Engineering Faculty Publications

Determining the location of rare proteins in cells typically requires the use of on-sample amplification. Antibody based recognition and enzymatic amplification is used to produce large amounts of visible label at the site of protein expression, but these techniques suffer from the presence of nonspecific reactivity in the biological sample and from poor spatial control over the label. Polymerization based amplification is a recently developed alternative means of creating an on-sample amplification for fluorescence applications, while not suffering from endogenous labels or loss of signal localization. This manuscript builds upon polymerization based amplification by developing a stable, archivable, and colorimetric …

First Proof Of Concept Of Sustainable Metabolite Production From High Solids Fermentation Of Lignocellulosic Biomass Using A Bacterial Co-Culture And Cycling Flush System, Wanying Yao, Sue E. Nokes

Biosystems and Agricultural Engineering Faculty Publications

To improve the lignocellulose conversion for ABE in high solids fermentation, this study explored the feasibility of cycling the process through the cellulolytic or/and solventogenic phases via intermittent flushing of the fermentation media. Five different flushing strategies (varying medium ingredients, inoculum supplement and cycling through phases) were investigated. Flushing regularly throughout the cellulolytic phase is necessary because re-incubation at 65 °C significantly improved glucose availability by at least 6-fold. The solvents accumulation was increased by 4-fold using corn stover (3-fold using miscanthus) over that produced by flushing only through the solventogenic phase. In addition, cycling process was simplified by re-incubating …

Methods To Expedite And Streamline Utility Relocations For Road Projects, Roy Sturgill, Timothy R.B. Taylor, Seyedmahdi Ghorashinezhad, Jiwen Zhang

Kentucky Transportation Center Research Report

Executive Summary This report describes best practices and tools to streamline and expedite utility relocations when they are required as part of road construction projects. As part of this effort, a research team from the Kentucky Transportation Center (KTC) conducted extensive qualitative research that involved mapping current practices at the Kentucky Transportation Cabinet (KYTC) and reviewing utility manuals from KYTC and other state transportation agencies. The KTC research team also conducted in-depth interviews with KYTC engineers and staff as well as representatives from utility companies (UCs). Based on the data from these investigations, KTC developed a number of recommendations to …

Railway/Highway At-Grade Crossing Surface Management: An Overview, Brett R. Malloy, Jerry G. Rose

Kentucky Transportation Center Research Report

This report draws on data from around the United States to describe the features of a successful railway/highway at-grade crossing management program; it emphasizes the highway/trackbed structures and crossing surfaces. Developing a structurally adequate crossing system is imperative, as this will produce a smooth surface and a stable highway/trackbed that prolongs crossings’ lifespans while keeping maintenance costs low and minimizing the number of disruptions encountered by highway and railway traffic. An overview of the guidance issued by several transportation agencies and organizations to facilitate the design and construction of railway/highway at-grade crossings is included here. Equally important to developing a …

Effect Of Enhanced Trackbed Support On Railway/Highway At-Grade Crossing Performance, Jerry G. Rose, Brett R. Malloy

Kentucky Transportation Center Research Report

This report documents the long-term performance of 89 railway/highway at-grade crossings in Kentucky and adjacent states that contain asphalt underlayment underneath the ballast. Asphalt underlayment increases load carrying capacity for trains and highway vehicles while enhancing the support structure’s waterproofing and confinement. The asphalt underlayment crossings studied were installed at sites that had historically exhibited poor performance and short service lives. Most of the crossing sites evaluated were 10-15 years old; however, their ages ranged up to 30 years. All of the crossings investigated have shown excellent performance since the installation of asphalt underlayments. No crossing failures, such as excessive …

Railway/Highway At-Grade Crossing Surface Rehabilitation Manual: Recommendations And Guides, Brett R. Malloy, Macy L. Purcell, Jerry G. Rose

Kentucky Transportation Center Research Report

This Railway/Highway At-Grade Crossing Surface Rehabilitation Manual offers guidance to engineers and project planners for designing, constructing, and managing railway/highway crossing rehabilitation projects. The manual includes information on pre-project administration, project execution, and post-project management and oversight. Suggestions are provided for determining the most cost-effective rehabilitation procedure, techniques to insure the appropriate installation procedures are followed onsite, and instructions for post-project administration and inspection procedures. The primary goal of this manual is to aid with the implementation of a crossing rehabilitation program; all of its guidance underscores the importance of achieving costeffective solutions through the use of best practices to …

Recommendations For Kytc’S Railway/Highway At-Grade Crossing Surface Management Practices, Brett R. Malloy, Jerry G. Rose, Macy L. Purcell

Kentucky Transportation Center Research Report

An ideal Railway/Highway At-Grade Crossing Management program involves selecting costeffective practices when designing new crossings and rehabilitating existing crossings. This report outlines two strategies to enhance KYTC’s existing program. First, it describes a process that uses decision-option diagrams to optimize the assessment and implementation of engineering solutions in order to restore desired smoothness, minimize settlement in the postconstruction phase, and foster acceptable long-term performance of crossings following their rehabilitation. Decision-option diagrams rely on assessments that are site-specific and based on historical performance, the present observed performance and condition, and the measureable parameters specific to particular crossings. To supplement this process, …

Catechol Oxidation By Ozone And Hydroxyl Radicals At The Air-Water Interface, Elizabeth A. Pillar, Robert C. Camm, Marcelo I. Guzman

Chemistry Faculty Publications

Anthropogenic emissions of aromatic hydrocarbons promptly react with hydroxyl radicals undergoing oxidation to form phenols and polyphenols (e.g., catechol) typically identified in the complex mixture of humic-like substances (HULIS). Because further processing of polyphenols in secondary organic aerosols (SOA) can continue mediated by a mechanism of ozonolysis at interfaces, a better understanding about how these reactions proceed at the air–water interface is needed. This work shows how catechol, a molecular probe of the oxygenated aromatic hydrocarbons present in SOA, can contribute interfacial reactive species that enhance the production of HULIS under atmospheric conditions. Reactive semiquinone radicals are quickly produced upon …

Field-Limited Migration Of Li-Ions In Li-Ion Battery, Fuqian Yang

Chemical and Materials Engineering Faculty Publications

The migration of Li-ions in lithium-ion battery cannot be simply described by Fick's second law; the interactions among ionic migration, field, and stress need to be taken into account when analyzing the migration of Li-ions. Using the theory of thermal activation process, the flux for ionic migration under concurrent action of electric field and mechanical stress is found to be a nonlinear function of the gradient of electric potential and the gradient of stress. Electric field can either accelerate or retard the growth of the lithiation layer, depending on polarity of the field.

Inland Waterway Operational Model & Simulation Along The Ohio River, Doug Kreis, Roy E. Sturgill, Brian K. Howell, Christopher W. Van Dyke, D. Stephen Voss

Kentucky Transportation Center Research Report

The inland waterway system of the U.S. is a vital network for transporting key goods and commodities from the point of production to manufacturers and consumers. Shipping materials via the inland waterways is arguably the most economical and environmentally friendly option (compared to hauling freight by trains or railways). Despite the advantages the inland waterways enjoys over competing modes, key infrastructure – such as locks and dams, which help to control water levels on a number of rivers and make navigation possible – is declining. Limited funds have been allocated to make the necessary repairs to lock and dam facilities. …

Audit Template For Inland Port Sustainability, Doug Kreis, Sarah Mccormack, Christopher Van Dyke, Bryan Gibson

Kentucky Transportation Center Research Report

This report serves as an assessment of port sustainability and its potential applications for the inland river ports of Kentucky and the surrounding region. The report discusses and defines sustainability, both generally as it relates to business and industry and specifically as it relates to the port industry. Given the unique nature of the inland port industry, the report reviews lessons learned from 11 port site visits conducted by Kentucky Transportation Center in 2012, primarily at major U.S. coastal ports but also representative inland ports. KTC’s analysis identifies the sustainability challenges facing various domestic and international ports, and what policy …

Inland Waterways Funding Mechanisms Synthesis, Doug Kreis, Bryan Gibson, Christopher W. Van Dyke, Candice Y. Wallace, Sarah M. Mccormack

Kentucky Transportation Center Research Report

The inland waterway system is a vital part of the nation’s multi-modal freight network. Although less visible than other modes, inland waterways allow shippers to transport bulk commodities in a relatively cheap and environmentally-friendly method. To ensure this transportation mode remains a feasible option and accommodates growth, it must continue to be safe, efficient, and functional. This synthesis provides comprehensive perspective on the financial prospects of the inland waterways system. It analyzes current funding levels, along with proposed funding changes and reforms.

Financial support for the inland waterways system comes from the Inland Waterways Trust Fund (IWTF). Historical data gathered …

The Stochastic Dynamics Of Tethered Microcantilevers In A Viscous Fluid, Brian A. Robbins, Milad Radiom, William A. Ducker, John Y. Walz, Mark R. Paul

Chemical and Materials Engineering Faculty Publications

We explore and quantify the coupled dynamics of a pair of micron scale cantilevers immersed in a viscous fluid that are also directly tethered to one another at their tips by a spring force. The spring force, for example, could represent the molecular stiffness or elasticity of a biomolecule or material tethered between the cantilevers. We use deterministic numerical simulations with the fluctuation-dissipation theorem to compute the stochastic dynamics of the cantilever pair for the conditions of experiment when driven only by Brownian motion. We validate our approach by comparing directly with experimental measurements in the absence of the tether …

Interactive Comment On “Iodine Oxide In The Global Marine Boundary Layer” By C. Prados-Roman Et Al., Marcelo I. Guzman

Chemistry Faculty Publications

No abstract provided.

Atomic Layer Deposition Of High Quality Hfo2 Using In-Situ Formed Hydrophilic Oxide As An Interfacial Layer, Lei Han, Jie Pan, Qinglin Zhang, Shibin Li, Zhi Chen

Electrical and Computer Engineering Faculty Publications

High-quality HfO₂ cannot be grown directly on Si substrate using atomic layer deposition (ALD), and an interfacial oxide layer is needed. Traditionally, interfacial oxide layer is formed either in SC1 solution (2 NH₄OH: 4 H₂O₂: 200 H₂O) or by ozonated water spraying. A highly hydrophilic SiO₂ interfacial layer was in-situ formed in the ALD chamber using 1 cycle of ozone and water. The HfO₂ deposited on this interfacial layer showed great growth linearity. The gate leakage current is comparable to that formed using chemical oxide as the interfacial layer. …

A NTh-Order Linear Algorithm For Extracting Diffuse Correlation Spectroscopy Blood Flow Indices In Heterogeneous Tissues, Yu Shang, Guoqiang Yu

Biomedical Engineering Faculty Publications

Conventional semi-infinite analytical solutions of correlation diffusion equation may lead to errors when calculating blood flow index (BFI) from diffuse correlation spectroscopy (DCS) measurements in tissues with irregular geometries. Very recently, we created an algorithm integrating a Nth-order linear model of autocorrelation function with the Monte Carlo simulation of photon migrations in homogenous tissues with arbitrary geometries for extraction of BFI (i.e., αD_B ). The purpose of this study is to extend the capability of the Nth-order linear algorithm for extracting BFI in heterogeneous tissues with arbitrary geometries. The previous linear algorithm was modified to extract BFIs …

Kentucky Traffic Collision Facts 2013, Kentucky Transportation Center, Kentucky State Police

Kentucky Transportation Center Research Report

KENTUCKY’S TRAFFIC COLLISION FACTS report for 2013 is based on collision reports submitted to the Kentucky State Police Records Branch. As required by Kentucky Revised Statutes 189.635, “every law enforcement agency whose officers investigate a vehicle accident of which a report must be made…shall file a report of the accident…within ten days after investigation of the accident upon forms supplied by the bureau.” The stated purpose of this requirement is to utilize data on traffic collisions for such purposes as will improve the traffic safety program in the Commonwealth. Data contained in this report are based solely on the observations …

Automating Deployment Of Several Gbrowse Instances, Neil Moore, Jerzy W. Jaromczyk, Christopher L. Schardl, Joedocei Hill, Devin Wright

Computer Science Presentations

Background

As part of the fungal endophyte genomes project, we maintain genome browsers for several dozen strains of fungi from the Clavicipitaceae and related families. These genome browsers are based on the GBrowse software, with a large collection of in-house software for visualization, analysis, and searching of genome features.

Although GBrowse supports serving multiple data sources, such as distinct genome assemblies, from a single GBrowse instance, there are advantages to maintaining separate instances for each genome. Besides permitting per-genome customizations of the software, page layout, and database schemas, our use of separate instances also allows us to maintain different security …

Liquid Metal Electrodes For Rechargeable Batteries, Rutooj Deshpande, Juchuan Li, Yang-Tse Cheng

Chemical and Materials Engineering Faculty Patents

An electrode for a lithium ion battery includes a liquid metal having a melting point that is below the operating temperature of the battery, which transforms from a liquid to a solid during lithiation, and wherein the liquid metal transforms from a solid to a liquid during delithiation.

Near-Infrared Optical Absorption Enhanced In Black Silicon Via Ag Nanoparticle-Induced Localized Surface Plasmon, Peng Zhang, Shibin Li, Chunhua Liu, Xiongbang Wei, Zhiming Wu, Yadong Jiang, Zhi Chen

Electrical and Computer Engineering Faculty Publications

Due to the localized surface plasmon (LSP) effect induced by Ag nanoparticles inside black silicon, the optical absorption of black silicon is enhanced dramatically in near-infrared range (1,100 to 2,500 nm). The black silicon with Ag nanoparticles shows much higher absorption than black silicon fabricated by chemical etching or reactive ion etching over ultraviolet to near-infrared (UV-VIS-NIR, 250 to 2,500 nm). The maximum absorption even increased up to 93.6% in the NIR range (820 to 2,500 nm). The high absorption in NIR range makes LSP-enhanced black silicon a potential material used for NIR-sensitive optoelectronic device.

PACS

78.67.Bf; 78.30.Fs; 78.40.-q; 42.70.Gi

Effect Of Soil Sampling Density And Landscape Features On Soil Test Phosphorus, Donald J. Stamper, Carmen T. Agouridis, Dwayne R. Edwards, Mark A. Purschwitz

Biosystems and Agricultural Engineering Faculty Publications

Organic and/or inorganic fertilizers are used to promote crop growth yet the rate of fertilizer application is often based on the nitrogen needs of the crop and not the phosphorus needs, especially when utilizing animal manures with low N-to-P ratios as compared to plant N:P uptake. Because of this, soil phosphorus levels in many areas of the world are in excess of crop needs. Excessive levels of phosphorus in water bodies such as streams and lakes can result in a condition known as eutrophication. With eutrophication, nutrients promote algal growth which in turn decreases dissolved oxygen levels in receiving water …

Analysis Of Traffic Crash Data In Kentucky (2009-2013), Eric R. Green, Kenneth R. Agent, Jerry G. Pigman, Michael A. Fields

Kentucky Transportation Center Research Report

This report documents an analysis of traffic crash data in Kentucky for the years of 2009 through 2013. A primary objective of this study was to determine average crash statistics for Kentucky highways. Rates were calculated for various types of highways and for counties and cities. Difference criteria were used for exposure.

Average and critical numbers and rates of crashes were calculated for various types of high ways in rural and urban areas. These rates used crashes identified on highways where traffic volumes were available. Improved methods of identifying crash locations have resulted in higher rates for the last couple …

Roadway Contributing Factors In Traffic Crashes, Kenneth R. Agent

Kentucky Transportation Center Research Report

This project involved an evaluation of the codes which relate to roadway contributing factors. This included a review of relevant codes used in other states. Crashes with related codes were summarized and analyzed. A sample of crash sites was inspected to evaluate the accuracy and consistency of the data being evaluated.

The results of the study are recommendations for a coding format to enable accurate and consistent data concerning the roadway as it affected the crash as well as examples of areas of training to improve the accuracy and consistency of the data.

Recommendations relating to coding of the police …

Applying Accelerator Mass Spectrometry For Low-Level Detection Of Complex Engineered Nanoparticles In Biological Media, Binghui Wang, George S. Jackson, Robert A. Yokel, Eric A. Grulke

Pharmaceutical Sciences Faculty Publications

Complex engineered nanoparticles (CENPs), which have different core and surface components, are being developed for medicinal, pharmaceutical and industrial applications. One of the key challenges for environmental health and safety assessments of CENPs is to identify and quantity their transformations in biological environments. This study reports the effects of in vivo exposure of citrate-coated nanoalumina with different rare isotope labels on each component. This CENP was dosed to the rat and accelerator mass spectrometry (AMS) was used to quantify ²⁶Al, ¹⁴C, and their ratio in the dosing material and tissue samples. For CENPs detected in the liver, the …

Racial Disparities In Access To Community Water Supply Service In Wake County, North Carolina, Jacqueline Macdonald Gibson, Nicholas Defelice, Daniel Sebastian, Hannah Leker

Frontiers in Public Health Services and Systems Research

Anecdotal evidence suggests that historically African American communities on the fringes of cities and towns in North Carolina have been systematically denied access to municipal drinking water service. This paper presents the first statistical analysis of the role of race in determining water access in these fringe areas, known as extraterritorial jurisdictions. Using publicly available property tax data, we quantified the percentage of residences with municipal water service in each census block in Wake County (the second-largest by population in North Carolina). Using the resulting water service maps plus 2010 U.S. Census data, we employed a logistic regression to assess …

Oxidation-Resistant, Solution-Processed Plasmonic Ni Nanochain-SioX (X < 2) Selective Solar Thermal Absorbers, Xiaobai Yu, Xiaoxin Wang, Qinglin Zhang, Juchuan Li, Jifeng Liu

Chemical and Materials Engineering Faculty Publications

Metal oxidation at high temperatures has long been a challenge in cermet solar thermal absorbers, which impedes the development of atmospherically stable, high-temperature, high-performance concentrated solar power (CSP) systems. In this work, we demonstrate solution-processed Ni nanochain-SiO_x (x < 2) and Ni nanochain-SiO₂ selective solar thermal absorbers that exhibit a strong anti-oxidation behavior up to 600 °C in air. The thermal stability is far superior to previously reported Ni nanoparticle-Al₂O₃ selective solar thermal absorbers, which readily oxidize at 450 °C. The SiO_x (x < 2) and SiO₂ matrices are derived from hydrogen silsesquioxane and tetraethyl orthosilicate precursors, respectively, which comprise Si-O cage-like …

Lipid Extraction From Scenedesmus Sp. Microalgae For Biodiesel Production Using Hot Compressed Hexane, Hee-Yong Shin, Jae-Hun Ryu, Seong-Youl Bae, Czarena L. Crofcheck, Mark Crocker

Center for Applied Energy Research Faculty and Staff Publications

Lipid extraction from Scenedesmus sp. microalgae using hot compressed hexane (HCH) was investigated. Extraction performance was evaluated near the critical point of hexane and was compared with that of hexane extraction performed at room temperature and pressure, and the Bligh and Dyer extraction method. Experimental data showed that HCH significantly improves the lipid yield and rate of lipid extraction compared to the use of hexane at ambient conditions. High yields of biodiesel-convertible lipid fractions were rapidly achieved at the critical point of hexane, at a level comparable to that of the Bligh and Dyer method.

A Non-Destructive Method For Measuring The Mechanical Properties Of Ultrathin Films Prepared By Atomic Layer Deposition, Qinglin Zhang, Xingcheng Xiao, Yang-Tse Cheng, Mark W. Verbrugge

Chemical and Materials Engineering Faculty Publications

The mechanical properties of ultrathin films synthesized by atomic layer deposition (ALD) are critical for the liability of their coated devices. However, it has been a challenge to reliably measure critical properties of ALD films due to the influence from the substrate. In this work, we use the laser acoustic wave (LAW) technique, a non-destructive method, to measure the elastic properties of ultrathin Al₂O₃ films by ALD. The measured properties are consistent with previous work using other approaches. The LAW method can be easily applied to measure the mechanical properties of various ALD thin films for multiple …

Persistent Hepatic Structural Alterations Following Nanoceria Vascular Infusion In The Rat, Michael T. Tseng, Qiang Fu, Khoua Lor, G. Rafael Fernandez-Botran, Zhong-Bin Deng, Uschi M. Graham, D. Allan Butterfield, Eric A. Grulke, Robert A. Yokel

Chemistry Faculty Publications

Understanding the long-term effects and possible toxicity of nanoceria, a widely utilized commercial metal oxide, is of particular importance as it is poised for development as a therapeutic agent based on its autocatalytic redox behavior. We show here evidence of acute and subacute adverse hepatic responses, after a single infusion of an aqueous dispersion of 85 mg/kg, 30 nm nanoceria into Sprague Dawley rats. Light and electron microscopic evidence of avid uptake of nanoceria by Kupffer cells was detected as early as 1 hr after infusion. Biopersistent nanoceria stimulated cluster of differentiation 3⁺ lymphocyte proliferation that intermingled with nanoceria-containing …

Commuter Rail, Timothy J. Brock, Reginald R. Souleyrette

Civil Engineering Faculty Publications

No abstract provided.