Engineering Commons^™

Acceleration Of The Maturation Of Tissue Engineered Grafts By Dynamic Force Stimulation Or Gene Therapy, Shila Taylor

All Theses

Over 16 million people suffer from osteoarthritis (OA). As the body ages OA and other cartilage diseases create an imbalance of anabolic and catabolic cell activities in cartilage and or over time the cartilage is damaged and wears away which creates lesion that resulting in pain. Most clinical surgeries are either temporary or have not gone through trials to test their success. For a long term solution researchers have been looking at replacing cartilage with a tissue engineered graft. One of the major problems to date has been is the strength of the scaffold.
Natural cartilage needs loading for its …

N-Glycan Modification In Aspergillus Species, Elke Kainz, Andreas Gallmetzer, Christian Hatzl, Juergen H. Nett, Huijuan Li, Thorsten Schinko, Robert Pachlinger, Harald Berger, Yazmid Reyes-Dominguez, Andreas Bernreiter, Tillmann Gerngross, Stefan Wildt, Joseph Strauss

Dartmouth Scholarship

The production by filamentous fungi of therapeutic glycoproteins intended for use in mammals is held back by the inherent difference in protein N-glycosylation and by the inability of the fungal cell to modify proteins with mammalian glycosylation structures. Here, we report protein N-glycan engineering in two Aspergillus species. We functionally expressed in the fungal hosts heterologous chimeric fusion proteins containing different localization peptides and catalytic domains. . This strategy allowed the isolation of a strain with a functional -1,2-mannosidase producing increased amounts of N-glycans of the Man 5 GlcNAc 2 type. This strain was further engineered by the introduction of …

Optical Force Based Cancer Cell Identification, Justin Roman

All Theses

We present the basis of a novel, non-invasive technique for cell diagnostics which utilizes the optical force generated by a weakly focused laser beam to distinguish cells based on their size, structure, composition, and membrane properties. Cell populations of different types, biological states or with different treatments can be studied. This research focuses on two particular instances where other methods of cell sorting, such as those that require fluorescent markers, are not ideal. What's more, this research emphasizes the ability to sort morphologically similar cells that are identical to the naked eye, but phenotypically different on the molecular level. The …

Development Of An In Vitro Test System For Breast Cancer Research, Chih-Chao Yang

All Dissertations

In the United States, breast cancer is the third most common cause of cancer death (after lung cancer and colon cancer). In 2007, breast cancer is expected to cause 40,910 deaths (7% of cancer deaths; almost 2% of all deaths) in the U.S. The long term goal of this project is to develop an in vitro test system that can be used to develop breast cancer vaccine or screen breast cancer chemotherapy. This dissertation was driven by four objectives and it can be thought as a toolbox that provides practical experimental design and lab work for the development of an …

Laminar Flow In Mini-Fluidics Channels Assembly And Its Application In Zebra Fish Embryo Research, Radek Glaser

Radek Glaser

A Mini-Fluidics system was designed to facilitate the muscle growth of the Zebra Fish embryos. This experimental device is made of peristaltic pump, inflow/outflow manifolds, fluid storage tank, series of valves and flexible pipes and the main plate with six mini channels. These closed channels provide pathways for an extremely laminar flow. The Zebra Fish embryos are placed in the channels and exposed to the forces present in the fluid.

Adipocyte Response To Injectable Beads Engineered For Breast Tissue Reconstruction, Katherine Neser

All Theses

It is estimated that over 150,000 patients will be diagnosed with invasive breast cancer in 2007. Patients must undergo a mastectomy or a lumpectomy to remove the cancerous tissue, but only a mastectomy allows breast reconstructive surgery. Due to the limitations of current reconstruction options, new alternatives are being explored. Injectable materials have been suggested for breast tissue reconstruction because of their versatility. Cells cultured on injectable beads form cell carriers that may be mixed with a hydrogel, resulting in a construct that may be injected through a syringe to restore normal tissue mass. This solution offers breast cancer patients …

Angular Momentum In Human Walking, Marko Popovic, Hugh Herr

Marko B. Popovic

Angular momentum is a conserved physical quantity for isolated systems where no external moments act about a bodyʼs center of mass (CM). However, in the case of legged locomotion, where the body interacts with the environment (ground reaction forces), there is no a priori reason for this relationship to hold. A key hypothesis in this paper is that angular momentum is highly regulated throughout the walking cycle about all three spatial directions [ (t) ≈0], and therefore horizontal ground reaction forces and the center of pressure trajectory can be explained predominantly through an analysis that assumes zero net moment about …

Mems Capacitive Strain Sensing Elements For Integrated Total Knee Arthroplasty Prosthesis Monitoring, Boyd Mccutchen Evans Iii

Doctoral Dissertations

Measuring the in vivo load state of Total Knee Arthroplasty (TKA) components is required to understand the structural environment and wear characteristics of the devices. The ability to acquire this information gives tremendous insight into the mechanics of the joint replacement prosthesis. Data corresponding to normal loads, in-plane loads, shear loads, load center, contact area, and the rate of loading is needed to fully understand the kinematics and kinetics of the orthopedic implant. In this research, a novel sensing system has been developed which is capable of fully characterizing three-dimensional strain and stress at a single location.

Capacitance-based sensors were …

Theoretical Modeling And Experimental Validation Of In Vivo Mechanics For Subjects Having Variable Cervical Spine Conditions, Fei Liu

Doctoral Dissertations

The objective of this study was to use the state-of-art 3D-to-2D registration technologies including fluoroscopic, CT and MRI methods to analyze 2D and 3D in vivo kinematics of the whole cervical spine under variable conditions; and use inverse dynamic model based on Kane’s dynamics to predict their 2D and 3D in vivo interactive contact and muscular forces. Totally, forty patients (ten having normal cervical spines, ten having degenerative cervical spines, ten having anterior cervical decompression and fusion (ACDF), and ten having cervical artificial disc replacement (CADR)) were enrolled into 2D study and three patients (one having normal cervical spines, one …

Characterization Of A Biomimetic Calcium-Deficient Hydroxyapatite-Bacterial Cellulose Composite, Stacy Hutchens

Doctoral Dissertations

Bone is the second most implanted tissue next to blood causing approximately 2.2 million people to receive bone grafts each year. Developing safe synthetic bone grafts allows quick and safe restoration of bone function while avoiding the surgical risks associated with bone autografting (self donation), and risks of disease transmission and immunogenic response associated with allografts (bone donated from other humans) and xenografts (grafts derived from animal tissue). This dissertation entails the study and development of a novel potential synthetic bone graft consisting of a composite of calcium-deficient hydroxyapatite (CdHAP) biomimetically deposited in a bacterial cellulose (BC) hydrogel.

To determine …

Prolonged Quadriceps Activity Following Imposed Hip Extension: A Neurophysiological Mechanism For Stiff-Knee Gait?, Michael D. Lewek, T. George Hornby, Yasin Y. Dhaher, Brian D. Schmit

Biomedical Engineering Faculty Research and Publications

The biomechanical characteristics of stiff knee gait following neurological injury include decreased knee flexion velocity at toe-off, which may be due to exaggerated quadriceps activity. The neuromuscular mechanism underlying this abnormal activity is unclear, although hyperexcitable heteronymous reflexes may be a source of impaired coordination. The present study examines the contribution of reflex activity from hip flexors on knee extensors following stroke and its association with reduced swing-phase knee flexion during walking. Twelve individuals poststroke and six control subjects were positioned in supine on a Biodex dynamometer with the ankle and knee held in a static position. Isolated hip extension …

A Coupled Fluid-Structure Model Of A Therapeutic Ultrasound Angioplasty Wire Waveguide, Graham Gavin, Finbar Dolan, M.S. Hashmi, Garrett Mcguinness

Articles

Ultrasonic longitudinal displacements, delivered to the distal tips of small diameter wire waveguides, have been shown to be capable of disrupting complicated atherosclerotic plaques during vascular interventions. These ultrasonic displacements can disrupt plaques by direct contact ablation but also by pressure waves, associated cavitation and acoustic streaming developed in the surrounding blood and tissue cavities. The pressure waves developed within the arterial lumen appear to play a major role but are complex to predict as they are determined by the distal tip output of the wire waveguide (both displacement and frequency), the geometric features of the waveguide tip and the …

Department Of Biological Systems Engineering Newsletter, Issue 3, Vol. 2, December 2007

BSE Department Magazine

Contents:
New Tractor Test Track Dedication
From the Department Head
Awards
Meet the Faculty
Alumni News
Student News
Summer Graduations
Quarter-scale Tractor Competition
ASABE Student Branch
ASABE International Preprofessional Council
Distinguished Fellowship Awards
John and Louise Skala Fellowships
Researching Plant Sterols
Milton E. Mohr Fellowship in Agriculture
Scholarships and Ice Cream
100 YEARS As a University of Nebraska Department
Alumnus Profile
Career opportunities in food engineering
Congratulations
Comings and Goings

A Computer Model Of Gluconeogenesis And Lipid Metabolism In The Perfused Liver, Elie Chalhoub, Richard W. Hanson, Joanne M. Belovich

Chemical & Biomedical Engineering Faculty Publications

A mathematical model of the perfused rat liver was developed to predict intermediate metabolite concentrations and fluxes in response to changes in various substrate concentrations in the perfusion medium. The model simulates gluconeogenesis in the liver perfused separately with lactate and pyruvate and the combination of these substrates with fatty acids (oleate). The model consists of key reactions representing gluconeogenesis, glycolysis, fatty acid metabolism, tricarboxylic acid cycle, oxidative phosphorylation, and ketogenesis. Michaelis-Menten-type kinetic expressions, with control by ATP/ADP, are used for many of the reactions. For key regulated reactions (fructose-1,6-bisphosphatase, phosphofructokinase, pyruvate carboxylase, pyruvate dehydrogenase complex, and pyruvate kinase), rate …

Separate Adaptive Mechanisms For Controlling Trajectory And Final Position In Reaching, Robert A. Scheidt, Claude Ghez

Biomedical Engineering Faculty Research and Publications

We examined control of the hand's trajectory (direction and shape) and final equilibrium position in horizontal planar arm movements by quantifying transfer of learned visuomotor rotations between two tasks that required aiming the hand to the same spatial targets. In a trajectory-reversal task (“slicing”), the hand reversed direction within the target and returned to the origin. In a positioning task (“reaching”), subjects moved the hand to the target and held it there; cursor feedback was provided only after movement ended to isolate learning of final position from trajectory direction. We asked whether learning acquired in one task would transfer to …

Applied Fourier Transform Near-Infrared Techniques For Biomass Compositional Analysis, Lu Liu

Masters Theses

A new method for rapid chemical analysis of lignocellulosic biomass was developed using Fourier transform near-infrared (FT-NIR) spectroscopic techniques. The new method is less time-consuming and expensive than traditional wet chemistry. A mathematical model correlated FT-NIR spectra with concentrations determined by wet chemistry. Chemical compositions of corn stover and switchgrass were evaluated in terms of glucose, xylose, galactose, arabinose, mannose, lignin, and ash. Model development evaluated multivariate regressions, spectral transform algorithms, and spectral pretreatments and selected partial least squares regression, log(1/R), and extended multiplicative signal correction, respectively. Chemical composition results indicated greater variability in corn stover than switchgrass, especially among …

Image And Sieve Analysis Of Biomass Particle Sizes And Separation After Size Reduction, Yuechuan Yang

Masters Theses

Improved physical separation of biomass concentrates higher-value components, returns unused plant components to the soil, and provides a more efficient platform for downstream industrial users. Sieving and Image Analysis (IA) were studied to evaluate biomass particle sizes, particle size distribution, and potential separation of biomass materials. Switchgrass, wheat straw, and corn stover were used in the study. Particles prepared by a knife mill equipped with various screen sizes were subject to sieving test and IA. Results showed that all three biomass materials would be analyzed using the fast, easy and accurate IA. Biomass particle physical properties, such as length, width, …

Glycosaminoglycan Stabilization In Bovine Pericardium, Lauren Browne

All Theses

Glutaraldehyde crosslinked bovine pericardium has been used for fabrication of bioprosthetic heart valves as well as cardiac patches for soft tissue repair. However, calcification and limited mechanical stability result in shortened life for the prostheses. Previous research has shown that glutaraldehyde crosslinking does not stabilize glycosaminoglycans (GAGs) and that GAGs are lost from porcine bioprosthetic heart valves[1]. Bovine pericardial tissue is composed of an amorphous network of collagen and elastin fibers, proteoglycans, and GAGs. The GAGs of bovine pericardium include dermatan sulfate, chondroitin sulfate, and hyaluronan [2].
It is hypothesized that Glut does not stabilize GAGs in pericardium and loss …

Development Of The Telemetrical Intraoperative Soft Tissue Tension Monitoring System In Total Knee Replacement With Mems And Asic Technologies, Gary To

Masters Theses

The alignment of the femoral and tibial components of the Total Knee Arthoplasty (TKA) is one of the most important factors to implant survivorship. Hence, numerous ligament balancing techniques and devices have been developed in order to accurately balance the knee intra-operatively. Spacer block, tensioner and tram adapter are instruments that allow surgeons to qualitatively balance the flexion and extension gaps during TKA. However, even with these instruments, the surgical procedure still relies on the skill and experience of the surgeon. The objective of this thesis is to develop a computerized surgical instrument that can acquire intra-operative data telemetrically for …

Different Learned Coordinate Frames For Planning Trajectories And Final Positions In Reaching, Claude Ghez, Robert A. Scheidt, Hank Heijink

Biomedical Engineering Faculty Research and Publications

We previously reported that the kinematics of reaching movements reflect the superimposition of two separate control mechanisms specifying the hand's spatial trajectory and its final equilibrium position. We now asked whether the brain maintains separate representations of the spatial goals for planning hand trajectory and final position. One group of subjects learned a 30° visuomotor rotation about the hand's starting point while performing a movement reversal task (“slicing”) in which they reversed direction at one target and terminated movement at another. This task required accuracy in acquiring a target mid-movement. A second group adapted while moving to—and stabilizing at—a single …

Mechanical Behavior And Failure Analysis Of Prosthetic Retaining Screws After Long‐Term Use In Vivo. Part 1: Characterization Of Adhesive Wear And Structure Of Retaining Screws, Youssef S. Al Jabbari, Raymond Fournelle, Gerald J. Ziebert, Jeffrey M. Toth, Anthony Iacopino

Biomedical Engineering Faculty Research and Publications

Purpose: The general aim of this study and those presented in Parts 2–4 of this series was to characterize the structure, properties, wear, and fracture of prosthetic retaining screws in fixed detachable hybrid prostheses after long‐term use in vivo. This part of the overall investigation addresses whether there are differences in thread wear between the screws closest to the fulcrum and those that are farthest from the fulcrum in fixed detachable hybrid prostheses.

Materials and Methods: The total number of prosthetic retaining screws used in this study was 100 (10 new and 90 used). New screws (controls) from Nobel Biocare …

Mechanical Behavior And Failure Analysis Of Prosthetic Retaining Screws After Long‐Term Use In Vivo. Part 2: Metallurgical And Microhardness Analysis, Youssef S. Al Jabbari, Raymond Fournelle, Gerald J. Ziebert, Jeffrey M. Toth, Anthony Iacopino

Biomedical Engineering Faculty Research and Publications

Abstract

Purpose: This study involved testing and analyzing multiple retrieved prosthetic retaining screws after long‐term use in vivo to: (1) detect manufacturing defects that could affect in‐service behavior; (2) characterize the microstructure and alloy composition; and (3) further characterize the wear mechanism of the screw threads.

Materials and Methods: Two new (control) screws from Nobel Biocare (NB) and 18 used (in service 18–120 months) retaining screws [12 from NB and 6 from Sterngold (SG)] were: (1) metallographically examined by light microscopy and scanning electron microscopy (SEM) to determine the microstructure; (2) analyzed by energy dispersive X‐ray (EDX) microanalysis to determine …

Assessment Of Human Trabecular Architecture In The Pubis By Three Radiographic Modalities, Andrew D. Wade, Andrew J. Nelson, Gregory J. Garvin, David W. Holdsworth

Anthropology Presentations

This poster discusses technical aspects of an investigation into the use of non-destructive radiological analyses of pubic cancellous bone structure to estimate age-at-death from human skeletal remains. This study stems from findings, in X-ray plain films, of increased rarification and orientation of trabeculae with age [1]; likely in concert with the macroscopic remodelling of the symphyseal surface currently used in estimation of age-at-death.

The study uses three non-destructive X-ray imaging modalities: plain film radiography, computed tomography (CT), and micro-CT (μCT). Plain film radiography has greater spatial resolution than CT [2] and is relatively inexpensive, widely available, and, with portable X-ray …

Transfected Cell Arrays For The High-Throughput Analysis Of Transcription Factor Activity, Abigail D. Bellis, Angela K. Pannier, Lonnie D Shea

Department of Biological Systems Engineering: Conference Presentations and White Papers

Transfected cell arrays offer a high-throughput method that allows for the parallel analysis of multiple pathways or genes within a physiological context. We have developed a transfected cell array that employs a dual-plasmid system that gives the ability to normalize for spot-to-spot variation in transfection efficiency. Each spot within the array contains a constitutively active normalization plasmid encoding for renilla luciferase as well as a functional plasmid that contains transcription factor specific binding elements driving the expression of firefly luciferase. Dual bioluminescent imaging provides highly sensitive analysis while limiting post-transfectional processing. Adequate transfection poses a significant challenge in extending this …

Genetic Engineering Of Syringyl-Enriched Lignin In Plants, Vincent Lee C. Chiang, Laigeng Li

Michigan Tech Patents

The present invention relates to a novel DNA sequence, which encodes a previously unidentified lignin biosynthetic pathway enzyme, sinapyl alcohol dehydrogenase (SAD) that regulates the biosynthesis of syringyl lignin in plants. Also provided are methods for incorporating this novel SAD gene sequence or substantially similar sequences into a plant genome for genetic engineering of syringyl-enriched lignin in plants.

Linear Tactile Nanodevice With Resolution On Par With Human Finger, Ravi F. Saraf, Vivek C. Maheshwari, Chieu Nguyen

Ravi Saraf Publications

A large area thin-film nanodevice made by self-assembly containing electroluminescent nanoparticles is reported. The ~100 nm thick device on application of potential across the top and bottom surface of the film converts local pressure to light. The intensity of the electroluminescent light is linearly proportional to the applied local compressive stress. By imaging the light, the stress distribution over the area of contact is obtained at resolution on par with human finger.

Airway Strain During Mechanical Ventilation In An Intact Animal Model, Scott W. Sinclair, Robert C. Molthen, Steven Thomas Haworth, Christopher A. Dawson, Christopher M. Waters

Biomedical Engineering Faculty Research and Publications

Rationale: Mechanical ventilation with large tidal volumes causes ventilator-induced lung injury in animal models. Little direct evidence exists regarding the deformation of airways in vivo during mechanical ventilation, or in the presence of positive end-expiratory pressure (PEEP).

Objectives: To measure airway strain and to estimate airway wall tension during mechanical ventilation in an intact animal model.

Methods: Sprague-Dawley rats were anesthetized and mechanically ventilated with tidal volumes of 6, 12, and 25 cm³/kg with and without 10–cm H₂O PEEP. Real-time tantalum bronchograms were obtained for each condition, using microfocal X-ray imaging. Images were …

Understanding Prediction Systems For Hla-Binding Peptides And T-Cell Epitope Identification, L. You, P. Zhang, M. Boden, V. Brusic

Ping Zhang

Peptide binding to HLA molecules is a critical step in induction and regulation of T-cell mediated immune responses. Because of combinatorial complexity of immune responses, systematic studies require combination of computational methods and experimentation. Most of available computational predictions are based on discriminating binders from non-binders based on use of suitable prediction thresholds. We compared four state-of-the-art binding affinity prediction models and found that nonlinear models show better performance than linear models. A comprehensive analysis of HLA binders (A*0101, A*0201, A*0301, A*1101, A*2402, B*0702, B*0801 and B*1501) showed that non-linear predictors predict peptide binding affinity with high accuracy. The analysis …

Gold Nanorods Mediate Tumor Cell Death By Compromising Membrane Integrity, Ling Tong, Yan Zhao, Terry B. Huff, Matthew N. Hansen, Alexander Wei, Ji-Xin Cheng

Other Nanotechnology Publications

Folate-conjugated gold nanorods targeted to tumor cell surfaces produced severe membrane damage upon near-infrared irradiation. Photoinduced injury to the plasma membrane resulted in a rapid increase in intracellular calcium (shown in green) with subsequent disruption of the actin network, featured prominently by the formation of membrane blebs.

Phase Transformations Of Calcium Phosphates Formed In Wet Field Environments, O. M. Clarkin, Mark R. Towler, G. M. Insley, M. E. Murphy

Chemical and Biochemical Engineering Faculty Research & Creative Works

The crystal phase and morphology of calcium phosphate salts precipitated in a wet field environment at temperatures between 30 and 70 °C and pHs between 3 and 8 were examined. Dicalcium Phosphate Dihydrate (DCPD) was the most prevalent phase precipitated. Using accelerated ageing study techniques, precipitates studied were aged, under dry conditions at 50 °C for 8 and 16 days, before being re-examined using XRD, FTIR and SEM techniques. DCPD was found to be most stable when precipitated at 40 °C and 5 pH. Considerably more phase transformation to Octacalcium Phosphate (OCP), Amorphous Calcium Phosphate (ACP) and Hydroxyapatite (HA) was …