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Articles 1 - 28 of 28
Full-Text Articles in Science and Mathematics Education
Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia
Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia
Journal of Nonprofit Innovation
Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.
Imagine Doris, who is …
The Use Of Course-Based Research In Computational Analysis Of Genomes To Enhance Student Learning, Christopher Shaffer
The Use Of Course-Based Research In Computational Analysis Of Genomes To Enhance Student Learning, Christopher Shaffer
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Exploring The Use Of Free Bioinformatics Modules In An Introductory Biochemistry Course, Charlsey Dodgen, Uzezi Uwerosuo, Chulhee Kang, Cathy Lee
Exploring The Use Of Free Bioinformatics Modules In An Introductory Biochemistry Course, Charlsey Dodgen, Uzezi Uwerosuo, Chulhee Kang, Cathy Lee
Georgia Journal of Science
Although bioinformatics, the use of computational science to study biology, has become imperative in many areas of the biological sciences and related career paths, introductory biochemistry courses may disregard practical knowledge on bioinformatics. For this reason, we merged a hands-on activity module into an undergraduate biochemistry course in two ways. First, we incorporated bioinformatics modules for building phylogenetic trees by aligning the active sites of 10 chosen related α-amylase enzymes using freely available data. Secondly, we chose three of those 10 α-amylase enzymes to compare the 3D structure of their active sites. This module gives the students an opportunity to …
1. Types Of Alignment: Presentations & Demos Assignment, Sarah O'Leary-Driscoll
1. Types Of Alignment: Presentations & Demos Assignment, Sarah O'Leary-Driscoll
Sequence Alignments
Pairwise Alignment: DNA
Pairwise Alignment: Protein
Multiple Sequence Alignment: DNA
Multiple Sequence Alignment: Protein
Computational Modeling Intervention: Using Dynamical Models To Teach Complex Biological Processes, Audrey J. Crowther, Tomáš Helikar, Nicholas Galt, Joseph Dauer, Heather Berganr, Bryan Kowal
Computational Modeling Intervention: Using Dynamical Models To Teach Complex Biological Processes, Audrey J. Crowther, Tomáš Helikar, Nicholas Galt, Joseph Dauer, Heather Berganr, Bryan Kowal
UCARE Research Products
The Unites States, while being one of the richest countries in the world, ranks 17th in science proficiency out of 31 countries. New techniques for teaching are needed if the US wants to keep up with increasing global competition. Often the problem with traditional methods for teaching biological processes is that they present the material as linear or causal, when in fact there is a much wider network at play. For example, cellular respiration is often represented as a linear process that always starts with glucose and always ends with ATP and water. However, there are several entry and exit …
Sequencing Techniques: A Comparison Assignment, Sarah O'Leary-Driscoll
Sequencing Techniques: A Comparison Assignment, Sarah O'Leary-Driscoll
Sequencing & Genome Mining
With your partner, create some sort of visual (table, map, chart, other, ask me!) that compares the main types of sequencing that we discussed, as well as two of the techniques considered 'next generation'.
Discussion Questions: Genome Mining, Sarah O'Leary-Driscoll
Discussion Questions: Genome Mining, Sarah O'Leary-Driscoll
Sequencing & Genome Mining
No abstract provided.
Alignment Information, Sarah O'Leary-Driscoll
Alignment Information, Sarah O'Leary-Driscoll
Sequence Alignments
Pairwise DNA alignment is frequently used to identify similar regions that will show how two sequences have functional or structural similarities. It can also be used to show how exons and introns change between different sequences and whether they have an effect on the final structure of the RNA after the DNA is processed within a cell.
Alignment Outline, Sarah O'Leary-Driscoll
2: Sequence Alignment Practice Activity, Sarah O'Leary-Driscoll
2: Sequence Alignment Practice Activity, Sarah O'Leary-Driscoll
Sequence Alignments
Now that you have learned how to do the four basic sequence alignments (Pairwise and Multiple for both nucleotide and protein sequences) select a gene/protein, it may be one that you've used before, and run each of these alignments.
Pt. 2: Presentation / Paper Guidelines, Sarah O'Leary-Driscoll
Pt. 2: Presentation / Paper Guidelines, Sarah O'Leary-Driscoll
Research Project
The presentations for your project should follow the same format that the paper would, but in a much more abbreviated form, aim for 5-7 minutes.
Project Guidelines, Sarah O'Leary-Driscoll
Pt. 1: Research Question & Background, Sarah O'Leary-Driscoll
Pt. 1: Research Question & Background, Sarah O'Leary-Driscoll
Research Project
No abstract provided.
Primer Design Activity, Sarah O'Leary-Driscoll
Obtaining Genomic Sequence Practice, Sarah O'Leary-Driscoll
Obtaining Genomic Sequence Practice, Sarah O'Leary-Driscoll
Introduction to NCBI
No abstract provided.
Dna Timeline And Poster Project, Sarah O'Leary-Driscoll
Dna Timeline And Poster Project, Sarah O'Leary-Driscoll
Genomics: Past & Future
The DNA timeline goes through many of the major discoveries that have driven our understanding of genetics since Mendel. Pick two scientists and create a PowerPoint slide poster (to be printed out on regular printer sized paper) that covers the following:
3: Genomics: Past & Future Bibliography, Sarah O'Leary-Driscoll
3: Genomics: Past & Future Bibliography, Sarah O'Leary-Driscoll
Genomics: Past & Future
No abstract provided.
Future Of Genomics: Presentations, Sarah O'Leary-Driscoll
Future Of Genomics: Presentations, Sarah O'Leary-Driscoll
Genomics: Past & Future
In his testimony to a House of Representatives sub-committee on health, director of the National Human Genome Research Institute, Francis S. Collins, said that the future of genomics had three main focal points:
"Genomics to Biology: The human genome sequence provides foundational information that now will allow development of a comprehensive catalog of all of the genome's components, determination of the function of all human genes, and deciphering of how genes and proteins work together in pathways and networks.
Genomics to Health: Completion of the human genome sequence offers a unique opportunity to understand the role of genetic factors in …
Database/Resource Acronyms, Sarah O'Leary-Driscoll
Database/Resource Acronyms, Sarah O'Leary-Driscoll
Course Information
No abstract provided.
What Is Bioinformatics?, Sarah O'Leary-Driscoll
What Is Bioinformatics?, Sarah O'Leary-Driscoll
Course Information
Bioinformatics has evolved into a full-fledged multidisciplinary subject that integrates developments in information and computer technology as applied to Biotechnology and Biological Sciences. Bioinformatics uses computer software tools for database creation, data management, data warehousing, data mining and global communication networking. Bioinformatics is the recording, annotation, storage, analysis, and searching/retrieval of nucleic acid sequence (genes and RNAs), protein sequence and structural information. This includes databases of the sequences and structural information as well methods to access, search, visualize and retrieve the information. Bioinformatics concern the creation and maintenance of databases of biological information whereby researchers can both access existing information …
Comprehensive Course Syllabus, Sarah O'Leary-Driscoll
Comprehensive Course Syllabus, Sarah O'Leary-Driscoll
Course Information
The bioinformatics seminar is focused on developing an understanding of the principles behind genomic analyses, developing skills using the different available bioinformatics programs, and becoming aware of the past developments and current research avenues that are benefited by these types of analyses.
Glossary Of Bioinformatics Terms, National Human Genome Research Institute
Glossary Of Bioinformatics Terms, National Human Genome Research Institute
Course Information
No abstract provided.
A Course-Based Research Experience: How Benefits Change With Increased Investment In Instructional Time, Christopher D. Shaffer, Consuelo J. Alvarez, April E. Bednarski, David Dunbar, Anya L. Goodman, Catherine Reinke, Anne G. Rosenwald, Michael J. Wolyniak, Cheryl Bailey, Daron Barnard, Christopher Bazinet, Dale L. Beach, James E.J. Bedard, Satish Bhalla, John Braverman, Martin Burg, Vidya Chandrasekaran, Hui-Min Chung, Kari Clase, Randall J. Dejong, Justin R. Diangelo, Chunguang Du, Todd T. Eckdahl, Heather Eisler, Julia A. Emerson, Amy Frary, Donald Frohlich, Yuying Gosser, Shubha Govind, Adam Haberman, Amy T. Hark, Charles Hauser, Arlene Hoogewerf, Laura L.M. Hoopes, Carina E. Howell, Diana Johnson, Christopher J. Jones, Lisa Kadlec, Marian Kaehler, S. Catherine Silver Key, Adam Kleinschmit, Nighat P. Kokan, Olga Kopp, Gary Kuleck, Judith Leatherman, Jane Lopilato, Christy Mackinnon, Juan Carlos Martinez-Cruzado, Gerard Mcneil, Stephanie Mel, Hemlata Mistry, Alexis Nagengast, Paul Overvoorde, Don W. Paetkau, Susan Parrish, Celeste N. Peterson, Mary Preuss, Laura K. Reed, Dennis Revie, Srebrenka Robic, Jennifer Roecklein-Canfield, Michael R. Rubin, Kenneth Saville, Stephanie Schroeder, Karim Sharif, Mary Shaw, Gary Skuse, Christopher D. Smith, Mary A. Smith, Sheryl T. Smith, Eric Spana, Mary Spratt, Aparna Sreenivasan, Joyce Stamm, Paul Szauter, Jeffrey S. Thompson, Matthew Wawersik, James Youngblom, Leming Zhou, Elaine R. Mardis, Jeremy Buhler, Wilson Leung, David Lopatto, Sarah C.R. Elgin
A Course-Based Research Experience: How Benefits Change With Increased Investment In Instructional Time, Christopher D. Shaffer, Consuelo J. Alvarez, April E. Bednarski, David Dunbar, Anya L. Goodman, Catherine Reinke, Anne G. Rosenwald, Michael J. Wolyniak, Cheryl Bailey, Daron Barnard, Christopher Bazinet, Dale L. Beach, James E.J. Bedard, Satish Bhalla, John Braverman, Martin Burg, Vidya Chandrasekaran, Hui-Min Chung, Kari Clase, Randall J. Dejong, Justin R. Diangelo, Chunguang Du, Todd T. Eckdahl, Heather Eisler, Julia A. Emerson, Amy Frary, Donald Frohlich, Yuying Gosser, Shubha Govind, Adam Haberman, Amy T. Hark, Charles Hauser, Arlene Hoogewerf, Laura L.M. Hoopes, Carina E. Howell, Diana Johnson, Christopher J. Jones, Lisa Kadlec, Marian Kaehler, S. Catherine Silver Key, Adam Kleinschmit, Nighat P. Kokan, Olga Kopp, Gary Kuleck, Judith Leatherman, Jane Lopilato, Christy Mackinnon, Juan Carlos Martinez-Cruzado, Gerard Mcneil, Stephanie Mel, Hemlata Mistry, Alexis Nagengast, Paul Overvoorde, Don W. Paetkau, Susan Parrish, Celeste N. Peterson, Mary Preuss, Laura K. Reed, Dennis Revie, Srebrenka Robic, Jennifer Roecklein-Canfield, Michael R. Rubin, Kenneth Saville, Stephanie Schroeder, Karim Sharif, Mary Shaw, Gary Skuse, Christopher D. Smith, Mary A. Smith, Sheryl T. Smith, Eric Spana, Mary Spratt, Aparna Sreenivasan, Joyce Stamm, Paul Szauter, Jeffrey S. Thompson, Matthew Wawersik, James Youngblom, Leming Zhou, Elaine R. Mardis, Jeremy Buhler, Wilson Leung, David Lopatto, Sarah C.R. Elgin
Faculty Publications
There is widespread agreement that science, technology, engineering, and mathematics programs should provide undergraduates with research experience. Practical issues and limited resources, however, make this a challenge. We have developed a bioinformatics project that provides a course-based research experience for students at a diverse group of schools and offers the opportunity to tailor this experience to local curriculum and institution-specific student needs. We assessed both attitude and knowledge gains, looking for insights into how students respond given this wide range of curricular and institutional variables. While different approaches all appear to result in learning gains, we find that a significant …
Transfer Of The United States National Parasite Collection [Announcement], Eric P. Hoberg, Anna J. Phillips
Transfer Of The United States National Parasite Collection [Announcement], Eric P. Hoberg, Anna J. Phillips
Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications
In 2013, an agreement was articulated between the United States Department of Agriculture/Agricultural Research Service (ARS) and the Smithsonian Institution to transfer the United States National Parasite Collection in its entirety (fluid specimens, slide specimens, frozen tissues and reprints) to the National Museum of Natural History (NMNH) in Washington, D.C. Current collections staff, including senior curator Dr. Eric P. Hoberg and support scientists/managers from the ARS will be transferred with the collection and with adjunct appointments in the NMNH will provide continuity and assistance for curation and accessibility during and after the relocation. New curatorial controls will be established under …
Engaging Students In A Bioinformatics Activity To Introduce Gene Structure And Function, Barbara J. May
Engaging Students In A Bioinformatics Activity To Introduce Gene Structure And Function, Barbara J. May
Biology Faculty Publications
Bioinformatics spans many fields of biological research and plays a vital role in mining and analyzing data. Therefore, there is an ever-increasing need for students to understand not only what can be learned from this data, but also how to use basic bioinformatics tools. This activity is designed to provide secondary and undergraduate biology students to a hands-on activity meant to explore and understand gene structure with the use of basic bioinformatic tools. Students are provided an “unknown” sequence from which they are asked to use a free online gene finder program to identify the gene. Students then predict the …
1: "To Know Ourselves", The U.S. Department Of Energy, The Human Genome Project
1: "To Know Ourselves", The U.S. Department Of Energy, The Human Genome Project
Genomics: Past & Future
AT THE END OF THE ROAD in Little Cottonwood Canyon, near Salt Lake City, Alta is a place of near-mythic renown among skiers. In time it may well assume similar status among molecular geneticists. In December 1984, a conference there, co-sponsored by the U.S. Department of Energy, pondered a single question: Does modern DNA research offer a way of detecting tiny genetic mutations—and, in particular, of observing any increase in the mutation rate among the survivors of the Hiroshima and Nagasaki bombings and their descendants? In short the answer was, Not yet. But in an atmosphere of rare intellectual fertility, …
2: "The Mapping Of Chromosome 16", Norman A. Doggett, Raymond L. Stallings, Carl E. Hildebrand, Robert K. Moyzis
2: "The Mapping Of Chromosome 16", Norman A. Doggett, Raymond L. Stallings, Carl E. Hildebrand, Robert K. Moyzis
Genomics: Past & Future
Human chromosome 16 is the main focus of the mapping efforts at Los Alamos. The large photomicrograph on these opening pages illustrates the starting point for those mapping efforts, the evaluation of our chromosome-16-specific library of cloned fragments. Among the 23 pairs of human chromosomes, one pair, chromosome 16, is identified by fluorescence in-situ hybridization. Thousands of yellow fluorescent probes derived from the clone library have hybridized to both copies of chromosome 16. The high density and uniform coverage of the fluorescent signals were a strong indication that we could use the library to construct a map of overlapping cloned …
Control Of Insect Pests In Recent Mammal Collections, S. L. Williams, Hugh H. Genoways, D. A. Schlitter
Control Of Insect Pests In Recent Mammal Collections, S. L. Williams, Hugh H. Genoways, D. A. Schlitter
University of Nebraska State Museum: Mammalogy Papers
A review is made of numerous insecticides to determine their suitability for use in Recent mammal collections. Factors determining their value were based on human safety, ability to protect specimens without adverse effects, and other considerations. The more favorable insecticides to use in mammal collections include Dowfume 75, sulfuryl fluoride. dimethyldiclorovinyl phosphate, paradichlorobenzene, carbon dioxide, and naphthalene. Insecticides that are considered less favor able because of many limitations included aldrin, dieldrin, arsenic, borax, mitin, ethylene oxide, methoxychlor, methyl bromide, and pyrethrum. There are some insecticides that should never be used because of extreme health and/or fire hazards. These include carbon …