Digital Commons Network^™

Reply To: Contribution Of Carbon Inputs To Soil Carbon Accumulation Cannot Be Neglected, Feng Tao, Benjamin Z. Houlton, Serita D. Frey, Johannes Lehmann, Stefano Manzoni, Yuanyuan Huang, Lifen Jiang, Umakant Mishra, Bruce A. Hungate, Michael W. I. Schmidt, Markus Reichstein, Nuno Carvalhais, Philippe Ciais, Ying-Ping Wang, Bernhard Ahrens, Gustaf Hugelius, Toby D. Hocking, Xingjie Lu, Zheng Shi, Kostiantyn Viatkin, Ronald Vargas, Yusuf Yigini, Christian Omuto, Ashish A. Malik, Guillermo Peralta, Rosa Cuevas-Corona, Luciano E. Di Paolo, Isabel Luotto, Cuijuan Liao, Yi-Shuang Liang, Vinisa S. Saynes, Xiaomeng Huang, Yiqi Luo

Faculty Publications

In the accompanying Comment1, He et al. argue that the determinant role of microbial carbon use efficiency in global soil organic carbon (SOC) storage shown in Tao et al. (2023)2 was overestimated because carbon inputs were neglected in our data analysis while they suggest that our model-based analysis could be biased and model-dependent. Their argument is based on a different choice of independent variables in the data analysis and a sensitivity analysis of two process-based models other than that used in our study. We agree that both carbon inputs and outputs (as mediated by microbial processes) matter when predicting SOC …

The Upper Ocean At The End Of An Ice Age: Using Proxies In Benthic Foraminifera To Investigate Intermediate Water Changes During The Last Glacial Termination, Cassandre R. Stirpe

Electronic Theses and Dissertations

The ocean is an important component of the global climate system and plays a key role as a storage reservoir for heat and carbon. Under glacial conditions, the ocean sequestered carbon from the atmosphere, contributing to a cooler global climate. During the last glacial termination, that carbon was released back into the atmosphere, but the exact timing and mechanisms of this transfer are still not fully understood. This study examines waters from the intermediate depths of the Southern Ocean to gain insight into deglacial processes. Intermediate waters are capable of reacting to climate change on decadal timescales, making them a …

Season, Not Long-Term Warming, Affects The Relationship Between Ecosystem Function And Microbial Diversity, Melissa S. Shinfuku, Luiz A. Domeignoz-Horta, Mallory J. Choudoir, Serita D. Frey, Kristen M. Deangelis

Faculty Publications

Across biomes, soil biodiversity promotes ecosystem functions. However, whether this relationship will be maintained under climate change is uncertain. Here, using two long-term warming experiments, we investigated how warming affects the relationship between ecosystem functions and microbial diversity across seasons, soil horizons, and warming duration. The soils in these warming experiments were heated +5 °C above ambient for 13 or 28 years. We measured seven different ecosystem functions representative of soil carbon cycling, soil nitrogen cycling, or nutrient pools. We also surveyed bacterial and fungal community diversity. We found that the relationship between ecosystem function and bacterial diversity and the …

Design Of Stormwater Bmps For Surface And Groundwater Protection Based On Site-Scale Soil Properties: Phase I, Kelly Kibler, Lisa Chambers, Melanie Beazley

Florida DOT

Much of Earth’s nutrient cycling takes place in soils. Characteristics of soils control physical, chemical, and biological processes that determine rates of nutrient fluxes, storage, or transformation. As remediation of excess nutrients in stormwater runoff is one function of stormwater Best Management Practices (BMPs), the soil profile constitutes one of the most important factors of BMP design. Variation observed in BMP effectiveness (e.g., why one BMP design works effectively in one place and not another) can often be explained by variations in the soil profile, either through direct means or by a soil’s influence on hydraulics of stormwater flow through …

Metagenomic Investigation Of Microbial Dark Carbon Fixation, Viral Interactions, And Horizonal Gene Transfer Within A Convergent Margin Subsurface Ecosystem, Timothy Joseph Rogers

Doctoral Dissertations

Convergent margins are geological regions where two or more tectonic plates collide, and the denser “subducting slab” is pushed beneath the less dense overriding plate. As the slab descends, it devolatilizes under higher temperatures and pressures, allowing dissolved inorganic carbon (DIC) and redox active volatile rich fluids to cycle between the upper crust and Earth’s mantle. These fluids migrate through cracks and fissures in the upper mantle and crust, fueling chemolithoautotrophy-based microbial ecosystems in the subsurface before they are expelled on the surface in the form of hydrothermal seeps and springs. Chemolithoautotrophic ecosystems, such as those in the Costa Rican …

Nutrient Dynamics Of Freshwater Estuarine Sediments Disturbed By Dredging, Ryan Allan John Roekle

Theses and Dissertations

This study examined the nutrient environment of sediments in the Milwaukee River estuary and the dynamics of those nutrients during simulated disturbance experiments within the context of large-scale dredging remediation. Surface sediments were collected from throughout the Milwaukee estuary (including river, harbor, and nearshore stations) by PONAR, centrifuged to separate porewater (interstitial water) from solid material, and filtered to further isolate and stabilize dissolved material. Porewaters were analyzed for dissolved nutrients including ammoniacal nitrogen (AN), nitrate, nitrite, and soluble reactive phosphorus (SRP). Surface sediment porewaters within the estuary were often highly enriched in AN and SRP, which were often 10-2000x …

The Ecological Effects Of Nitrogen Enrichment In Aridlands, Jennifer Holguin

Open Access Theses & Dissertations

Anthropogenic nitrogen (N) deposition is one of the most prominent factors driving global change. Across the globe, N deposition has driven major changes in terrestrial ecosystems, such as declines in plant biodiversity, enhanced exotic plant growth, and changes to biogeochemical processes involved in carbon and nutrient cycling. While noteworthy effort has been put forth to investigate the effects of N deposition on terrestrial ecosystems, a disproportionate number of N addition studies have been conducted in temperate mesic systems. Thus, we lack a holistic and mechanistic understanding of how N deposition impact aridland ecosystems. Additionally, our predictions of the effects of …

High-Energy Storm Events And Their Impacts On Carbon Storage In Tidal Wetlands Of South Carolina, Gavin Gleasman

All Dissertations

Atmospheric carbon dioxide (CO₂) concentrations have been increasing at an accelerating rate for the past two centuries, profoundly impacting global climate change. Atmospheric CO₂ concentrations are influenced by the global carbon cycle through physical and biogeochemical pathways. Tidal wetland environments play a vital role in the global carbon cycle by offsetting atmospheric CO₂ concentrations through their natural physiochemical processes of high autotrophic productivity, allochthonous organic matter deposition, anoxic soils, and continuous accretion which promotes carbon sequestration with long-term storage at the land-ocean margin. The Intergovernmental Panel on Climate Change (IPCC) and United States Global Change Research …

Nitrogen Cycling In The Lower Chesapeake Bay And Mid- And South Atlantic Bight, Yifan Zhu

OES Theses and Dissertations

Nitrogen (N) is central to marine primary production; its availability often limits the capacity and rates of primary productivity in most of the world’s oceans. Contrastingly, estuaries frequently receive anthropogenic N loading, oftentimes resulting in eutrophication, harmful algal blooms (HABs), and substantially degraded water quality. Nutrient variability in both estuaries and oceanic regimes results from meteorological forcing and physical processes, including wind-induced, tidal, and mesoscale mixing and upwelling. In this dissertation, a comprehensive investigation of N variability and cycling and its links to physical-biogeochemical processes was conducted using time-series monitoring approaches, flux estimations, satellite imaging, biogeochemical measurements, and molecular analyses. …

The Emergence Of Convergence, Shana M. Sundstrom, David G. Angeler, Jessica G. Ernakovich, Jorge H. Garcia, Joseph A. Hamm, Orville Huntington, Craig R. Allen

Faculty Publications

Science is increasingly a collaborative pursuit. Although the modern scientific enterprise owes much to individuals working at the core of their field, humanity is increasingly confronted by highly complex problems that require the integration of a variety of disciplinary and methodological expertise. In 2016, the U.S. National Science Foundation launched an initiative prioritizing support for convergence research as a means of “solving vexing research problems, in particular, complex problems focusing on societal needs.” We discuss our understanding of the objectives of convergence research and describe in detail the conditions and processes likely to generate successful convergence research. We use our …

Short-Term Responses Of Soil Carbon, Nitrogen, And Microbial Biomass To Cover Crop Mixtures And Monocultures, Igor Alexandre De Souza, Amanda B. Daly, Jorg Schnecker, Nicholas D. Warren, Adalfredo Rocha Lobo Jr., Richard G. Smith, Andre Fonseca Brito, A. Stuart Grandy

Faculty Publications

Increasingly, cover crops are being adopted for the purpose of improving soil health, yet the timescale and magnitude by which living annual cover crops might modify soil chemical and biological aspects of soil health is not well understood. At the same time, there is growing interest among farmers in cover crop mixtures due to perceptions that species-rich cover crop communities will enhance soil health relative to monocultures. In a field experiment in southeast New Hampshire, we investigated how groups of cover crops grown as monocultures and mixtures for specific seasonal niches (winter/spring, summer, and fall) influenced levels of soil nitrogen …

Environmental Chemical Analysis Method Optimization And Application To Northwest Cuban Marine Sediment, Thea R. Bartlett

USF Tampa Graduate Theses and Dissertations

A method for gas chromatography tandem mass spectrometry (GC-MS/MS) in selected reaction monitoring (SRM) mode has been optimized to quantify 250 compounds of a variety of compound classes such as polycyclic aromatic hydrocarbons (PAHs), oxidized PAHs, organochlorinated pesticides, polychlorinated biphenyls, biomarkers (hopanes, steranes, tri-aromatic steroids, and fecal sterols), aliphatic hydrocarbons, and plastic additives. This method was validated based on available QA/QC standards using several environmental samples, both sediment and biota, and standard reference materials. This contaminant-focused method can be used as a forensic geochemistry tool to evaluate oil contamination and other contaminant histories in future research studies. When applied to …

Microbial Carbon Use Efficiency Promotes Global Soil Carbon Storage, Feng Tao, Yuanyuan Huang, Bruce A. Hungate, Stefano Manzoni, Serita D. Frey, Michael W. I. Schmidt, Markus Reichstein, Nuno Carvalhais, Philippe Ciais, Lifen Jiang, Johannes Lehmann, Ying-Ping Wang, Benjamin Z. Houlton, Bernhard Ahrens, Umakant Mishra, Gustaf Hugelius, Toby D. Hocking, Xingjie Lu, Zheng Shi, Kostiantyn Viatkin, Ronald Vargas, Yusuf Yigini, Christian Omuto, Ashish A. Malik, Guillermo Peralta, Rosa Cuevas-Corona, Luciano E. Di Paolo, Isabel Luotto, Cuijuan Liao, Yi-Shuang Liang, Vinisa S. Saynes, Xiaomeng Huang, Yiqi Luo

Faculty Publications

Soils store more carbon than other terrestrial ecosystems1,2. How soil organic carbon (SOC) forms and persists remains uncertain1,3, which makes it challenging to understand how it will respond to climatic change3,4. It has been suggested that soil microorganisms play an important role in SOC formation, preservation and loss5,6,7. Although microorganisms affect the accumulation and loss of soil organic matter through many pathways4,6,8,9,10,11, microbial carbon use efficiency (CUE) is an integrative metric that can capture the balance of these processes12,13. Although CUE has the potential to act as a predictor of variation in SOC storage, the role of CUE in SOC …

Small Community Water Systems Have The Highest Prevalence Of Mn In Drinking Water In California, Usa, Miranda Aiken, Samantha C. Ying

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Manganese (Mn) is currently regulated as a secondary contaminant in California, USA; however, recent revisions of the World Health Organization drinking water guidelines have increased regulatory attention of Mn in drinking water due to increasing reports of neurotoxic effects in infants and children. In this study, Mn concentrations reported to California’s Safe Drinking Water Information System were used to estimate the potentially exposed population within California based on system size. We estimate that between 2011 and 2021, over 525,000 users in areas with reported Mn data are potentially exposed to Mn concentrations exceeding the WHO health-based guideline (80 μg L …

The Dynamics Of Sedimentary Chlorophyll Α At A High-Energy Beach, Sarah (Gray) Abel

Honors Theses

Productive sandy beaches are one of the most crucial areas serving our ecosystem today. While often overlooked in scientific research, productive beaches have many essential functions that lead to the preservation and protection of many different species as well as ecological wellness and stability. A key factor that is linked to this productivity is the presence of chlorophyll in the sediments. Piston cores of the sediments at the low-tide mark at Waties Island, South Carolina, were collected across multiple years and subsequently analyzed for chlorophyll concentrations through fluorometry after acetone extraction and acidification. Each core profile was processed to calculate …

Investigation Of A Possible Switch Of Benthic Photosynthetic Organisms And Phytoplanktonic Organisms In White Point Swash, South Carolina, Nathan Easterling

Honors Theses

This research study examined the possible switch from benthic photosynthetic organisms to phytoplankton in the water column at White Point Swash, Long Bay, South Carolina, and what is causing this switch to occur. During Dr. Hannides’ and his group’s studies at this and other swashes in the past, they noticed this phenomenon of the benthic photosynthetic organisms taking over during a certain time and then the phytoplankton in the water column taking over during a different time. In this study, I measured the relative benthic macroalgal area coverage and sedimentary chlorophyll a concentration as measures of the abundance of benthic …

Suboxic And Anaerobic Respiration Across A Sandy-Shore-To-Estuarine Gradient, Jacey Ballard

Honors Theses

Sulfate is an inorganic ion that is one of the major ions of seawater. Sulfate is also an essential reactant in microbially mediated anaerobic respiration that produces sulfide, an energy source during chemosynthesis. Sulfide is widely found in sediment, and water rich in decaying organic material, as well as hydrothermal vents. While sulfate reduction occurs extensively in muds, such as those of marshes, it is not expected to occur in sand which is much better aerated. Recent research in our group documented extensive sub aerobic respiration in coastal sands which suggests that sulfate reduction may have also been happening. This …

Dissolved Copper Distributions In The Western Mississippi Sound: Characterizing An Unrecognized Endmember, Megan Hansen

Honors Theses

This study examined the distribution of dissolved copper (Cu) in the western Mississippi Sound, as the element can be beneficial or harmful to organisms depending on its concentration and its chemical form. A mixing experiment eliminated flocculation as a control on Cu distributions during estuarine mixing in both dissolved and colloidal fractions. Field sampling of the western Mississippi Sound occurred during a low river discharge period, and distributions of Cu indicated conservative mixing between fresh ([Cu] ≈ 17 nM) and saline ([Cu] ≈ 2 nM) sources in mid-to-high salinities. Storm outfalls were sampled after rain events to evaluate the impact …

Linking Decomposition Reactions In Arctic Soils To Microbial Enzyme Production, Jane Karen Martinez

Open Access Theses & Dissertations

Microbial processes such as soil enzyme production are a major driver of decomposition and a current topic of interest in arctic soils due to the effects of climate warming. Despite the advances in understanding soil enzymes, there are still knowledge gaps regarding the role of enzymes in decomposition. In this dissertation, I addressed three of those gaps in the following chapters: (Ch.2) to explore the location of enzymes within the soil matrix, (Ch.3) to identify peptides matched to soil enzymes produced by microorganisms for organic matter decomposition, and (Ch.4) understand the longevity of enzymes in the soil after microbial production. …

The Terroir Of Swiss Cheese: A Temporal And Geomorphological Investigation Of The Martian Co2 Sublimation Pits, Racine D. Cleveland

Graduate Theses and Dissertations

Observations by NASA Mars Global Surveyor showed evidence of rough topography on the South Pole of Mars. The topography is the result of CO2 sublimation processes that occur through the changing seasons on the red planet. These sublimation areas are known to scientists as Swiss Cheese Features (SCF). SCF are erosional degradation pits that have been studied for over two decades. Studies show that these SCF increase in area over time, but these values are collected by hand on a per feature basis. Models for the pit evolution have also played a part in understanding these SCF. This work is …

Evaluating Bulk Carbon And Nitrogen Isotope Compositions Of Acidic Hydrothermal Sediments On Earth– Implications For Mars Astrobiology, Chance Sturrup

Masters Theses

Carbon isotopes have been widely used as unique biosignatures because biologic processes commonly result in distinctive negative delta ¹³C values (-35 to -10 ‰) within organic material on Earth. However, the bulk delta ¹³C analysis in Gale crater sediments on Mars revealed a wider range of values, from -25 to +56 ‰ (Franz et al., 2020), which suggests a more complex origin. To determine if bulk isotope analysis can be successfully used to detect a microbial signature in a martian analog environment, we analyzed concentrations and isotope compositions of C within hydrothermal sediments in Iceland (Námafjall, Krýsuvík, Hveragerdi) …

The Impact Of Glacial Proximity On The Elemental Composition Of Leachate Derived From Sediment Weathering, Karoline Ford

Theses/Capstones/Creative Projects

This study assesses chemical weathering trends as they relate to glacial retreat. The chemical environment of surfaces exposed to the atmosphere differs significantly from beneath a glacier. As a glacier melts, changes to the biogeochemical processes generate environmental gradients. This study analyzed chemical weathering signals at different distances from a glacial front by comparing the elemental composition of leachate derived from sediments in southeastern Greenland. Samples from proglacial, nonglacial, and moraine locations were weathered in a laboratory setting, and ion chromatography was used to determine the elemental composition of the products. Divergent trends in leachate composition were observed as distance …

Molecular Evidence For The Export Of Terrigenous Organic Matter To The North Gulf Of Mexico By Solid-State 13C Nmr And Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Of Humic Acids, Sarah Ann Ware

Chemistry & Biochemistry Theses & Dissertations

Marine organic matter is mainly believed to originate from autochthonous organic matter, while terrigenous organic matter is assumed to be largely degraded prior to reaching the open ocean or more recently replaced by marine organic matter via a stripping process. Sediment samples along a transect extending from the Mississippi River Birdsfoot Delta to the Mississippi Canyon on the Louisiana continental shelf were examined by advanced analytical techniques, electrospray ionization coupled to a 12T Fourier transform ion cyclotron resonance mass spectrometer (ESI-FTICR-MS) and quantitative solid-state multiple cross polarization magic angle spinning (multi-CPMAS) ¹³C NMR in an effort to understand the …

The Phosphorus Puzzle: Why Metal Phosphites Could Be The Missing Piece, Eleanor Boyle, Thomas J. Leyden Iii

Symposium of Student Scholars

It is well understood that phosphorylation of organic molecules is a keystone mechanism toward developing early cell function. However, the source of phosphorous in prebiotic chemistry is under debate. Phosphate minerals were abundant on the early Earth, but they are highly insoluble. In comparison, metal phosphites are significantly more soluble. While they may not have been preserved in the geological record, there are several plausible pathways for their formation under prebiotic conditions. We hypothesize that metal phosphites were a major source of phosphorus. To test our hypothesis, we synthesized and characterized metal phosphites, containing the most abundant cations on the …

Trait-Based Assembly Of Arbuscular Mycorrhizal Fungal Communities Determines Soil Carbon Formation And Retention, Caitlyn C. A. Horsch, Pedro M. Antunes, Catherine Fahey, A. Stuart Grandy, Cynthia M. Kallenbach

Faculty Publications

Fungi are crucial for soil organic carbon (SOC) formation, especially for the more persistent mineral-associated organic C (MAOC) pool. Yet, evidence for this often overlooks arbuscular mycorrhizal fungi (AMF) communities and how their composition and traits impact SOC accumulation.

We grew sudangrass with AMF communities representing different traits conserved at the family level: competitors, from the Gigasporaceae family; ruderals, from the Glomeraceae family; or both families combined. We labeled sudangrass with 13C-CO2 to assess AMF contributions to SOC, impacts on SOC priming, and fungal biomass persistence in MAOC.

Single-family AMF communities decreased total SOC by 13.8%, likely due to fungal …

Strategies For Achieving Agriculture Carbon Peak And Carbon Neutrality In China Based On View Of Biogeochemical Cycle, Shiqi Yang, Xin Yan

Bulletin of Chinese Academy of Sciences (Chinese Version)

Biogeochemical cycle is the basic theory of matter (elements) flow among atmosphere, hydrosphere, biosphere and lithosphere, which provides important guidance to achieving the national goal of agriculture carbon peak (ACP) and agriculture carbon neutrality (ACN). As a basic industry, agriculture has large-scale temporal and spatial influence on the greenhouse effect, hence great importance should be attached to ACP and ACN in order to assist the overall strategy of achieving national carbon peak and neutrality. Based on the view of biogeochemical cycle and connotations of ACP and ACN, this article analyzes the paths to achieve ACP and ACN, and discusses the …

Meridional Survey Of The Central Pacific Reveals Iodide Accumulation In Equatorial Surface Waters And Benthic Sources In The Abyssal Plain, Rintaro Moriyasu, Kenneth M. Bolster, Dalton S. Hardisty, David C. Kadko, Mark P. Stephens, James W. Moffett

Faculty Publications

The distributions of iodate and iodide were measured along the GEOTRACES GP15 meridional transect at 152°W from the shelf of Alaska to Papeete, Tahiti. The transect included oxygenated waters near the shelf of Alaska, the full water column in the central basin in the North Pacific Basin, the upper water column spanning across seasonally mixed regimes in the north, oligotrophic regimes in the central gyre, and the equatorial upwelling. Iodide concentrations are highest in the permanently stratified tropical mixed layers, which reflect accumulation due to light-dependent biological processes, and decline rapidly below the euphotic zone. Vertical mixing coefficients (K …

Soil Microbial Legacies Influence Freeze–Thaw Responses Of Soil, Melissa A. Pastore, Aimee T. Classen, Marie E. English, Serita D. Frey, Melissa A. Knorr, Karin Rand, E. Carol Adair

Faculty Publications

Warmer winters with less snowfall are increasing the frequency of soil freeze–thaw cycles across temperate regions. Soil microbial responses to freeze–thaw cycles vary and some of this variation may be explained by microbial conditioning to prior winter conditions, yet such linkages remain largely unexplored. We investigated how differences in temperature history influenced microbial community composition and activity in response to freeze–thaw cycles.

We collected soil microbial communities that developed under colder (high elevation) and warmer (low elevation) temperature regimes in spruce-fir forests, then added each of these soil microbial communities to a sterile bulk-soil in a laboratory microcosm experiment. The …

An Analysis Of Tidal Mixing Front Dynamics And Frontal Biophysical Interaction In The Harpswell Sound Shelf Sea, Lemona Yingzhuo Niu

Honors Projects

Tidal Mixing Fronts (TMFs) are prominent hydrographic features of tidally energetic shallow shelf seas, representing the transition from mixed to stratified waters. These frontal boundaries often host enhanced phytoplankton primary productivity, as complete vertical mixing exhumes nutrients from depth to the light-lit surface. Existing observational programs for locating TMFs include infra-red satellite imagery of sea surface temperature (SST) and vertical profiling of temperature and density. However, challenges in observationally distinguishing mixed from mixing using only conservatively mixed hydrographic properties persist. A novel approach based on phytoplankton in-situ oxygen production response to light is proposed in this paper to distinguish stable …

Dust Deposition To The Bermuda Region: A Comparison Of Estimates Using Seasonally-Resolved Measurements Of Aluminum In Water-Column, Aerosol, And Rain Samples, Tara Williams, Peter Sedwick, Bettina Sohst, Joe Resing, Kristen Buck, Salvatore Caprara, Rod Johnson, Dan Ohnemus, Ben Twining, Alessandro Tagliabue

College of Sciences Posters

Dust deposition is a major source of bioactive trace elements to the surface ocean, yet this flux remains difficult to constrain. Previously, time-averaged dust flux has been estimated using surface ocean dissolved aluminum (DAl) concentrations, assumed values for aerosol aluminum solubility (%Al_S), and the residence time of DAl in the surface mixed layer (SML). We apply this method to estimate dust deposition in the Bermuda Atlantic Time-series Study (BATS) region using water-column DAl data from cruises in 2019, which is compared with direct flux estimates from contemporaneous measurements of aluminum in aerosols and rain collected on Bermuda. Seasonal …