Digital Commons Network^™

Exploring The Role Of Organic Matter Accumulation On Delta Evolution, Jorge Lorenzo Trueba, Vaughan Voller, Chris Paola, Robert Twilley, Azure Bevington

Jorge Lorenzo-Trueba

We explore the role of plant matter accumulation in the sediment column in determining the response of fluvial-deltas to base-level rise and simple subsidence profiles. Making the assumption that delta building processes operate to preserve the geometry of the delta plain, we model organic sedimentation in terms of the plant matter accumulation and accommodation (space made for sediment deposition) rates. A spatial integration of the organic sedimentation, added to the known river sediment input, leads to a model of delta evolution that estimates the fraction of organic sediments preserved in the delta. The model predicts that the maximum organic fraction …

Assessing The Potential To Decrease The Gulf Of Mexico Hypoxic Zone With Midwest Us Perennial Cellulosic Feedstock Production, Andy Vanloocke, Tracy E. Twine, Christopher J. Kucharik, Carl J. Bernacchi

Andy VanLoocke

The goal of this research was to determine the changes in streamflow, dissolved inorganic nitrogen (DIN) leaching and export to the Gulf of Mexico associated with a range of large-scale dedicated perennial cellulosic bioenergy production scenarios within in the Mississippi–Atchafalaya River Basin (MARB). To achieve this goal, we used Agro-IBIS, a vegetation model capable of simulating the biogeochemistry of row crops, miscanthus and switchgrass, coupled with THMB, a hydrology model capable of simulating streamflow and DIN export. Simulations were conducted at varying fertilizer application rates (0–200 kg N ha -1) and fractional replacement (5–25%) of current row crops with miscanthus …

Candidate Perennial Bioenergy Grasses Have A Higher Albedo Than Annual Row Crops, Jesse N. Miller, Andy Vanloocke, Nuria Gomez-Casanovas, Carl J. Bernacchi

Andy VanLoocke

The production of perennial cellulosic feedstocks for bioenergy presents the potential to diversify regional economies and the national energy supply, while also serving as climate ‘regulators’ due to a number of biogeochemical and biogeophysical differences relative to row crops. Numerous observational and model-based approaches have investigated biogeochemical trade-offs, such as increased carbon sequestration and increased water use, associated with growing cellulosic feedstocks. A less understood aspect is the biogeophysical changes associated with the difference in albedo (a), which could alter the local energy balance and cause local to regional cooling several times larger than that associated with offsetting carbon. Here, …

Disentangling Climatic And Anthropogenic Controls On Global Terrestrial Evapotranspiration Trends, Jiafu Mao, Wenting Fu, Xiaoying Shi, Daniel M. Ricciuto, Joshua B. Fisher, Robert E. Dickinson, Yaxing Wei, Willis Shem, Shilong Piao, Kaicun Wang, Christopher R. Schwalm, Hanqin Tian, Mingquan Mu, Altaf Arain, Philippe Ciais, Robert Cook, Yongdiu Dai, Daniel Hayes, Forrest M. Hoffman, Maoyi Huang, Suo Huang, Deborah N. Huntzinger, Akihiko Ito, Atul Jain, Anthony W. King, Huimin Lei, Chaoqun (Crystal) Lu, Huimin Lei, Anna M. Michalak, Changhui Peng, Shushi Peng, Benjamin Poulter, Kevin Schaefer, Elshin Jafarov, Peter E. Thornton, Weile Wang, Ning Zeng, Zhenzhong Zeng, Fang Zhao, Qiuan Zhu, Zaichun Zhu

Chaoqun (Crystal) Lu

We examined natural and anthropogenic controls on terrestrial evapotranspiration (ET) changes from 1982 to 2010 using multiple estimates from remote sensing-based datasets and process-oriented land surface models.A significant increasing trend of ET in each hemisphere was consistently revealed by observationally-constrained data and multi-model ensembles that considered historic natural and anthropogenic drivers. The climate impacts were simulated to determine the spatiotemporal variations in ET. Globally, risingCO2 ranked second in these models after the predominant climatic influences, and yielded decreasing trends in canopy transpiration and ET, especially for tropical forests and high-latitude shrub land. Increasing nitrogen deposition slightly amplified global ET via …

Environmental Forcing Does Not Induce Diel Or Synoptic Variation In The Carbon Isotope Content Of Forest Soil Respiration, Steven J. Hall, D. R. Bowling, J. E. Egan

Steven J. Hall

Recent studies have examined temporal fluctuations in the amount and carbon isotope content (δ13C) of CO2 produced by the respiration of roots and soil organisms. These changes have been correlated with diel cycles of environmental forcing (e.g., sunlight and soil temperature) and with synoptic-scale atmospheric motion (e.g., rain events and pressure-induced ventilation). We used an extensive suite of measurements to examine soil respiration over 2 months in a subalpine forest in Colorado, USA (the Niwot Ridge AmeriFlux forest). Observations included automated measurements of CO2 and δ13C of CO2 in the soil efflux, the soil gas profile, and forest air. There …

Toward “Optimal” Integration Of Terrestrial Biosphere Models, Christopher R. Schwalm, Deborah N. Huntzinger, Joshua B. Fisher, Anna M. Michalak, Kevin Bowman, Philippe Ciais, Robert Cook, Bassil El-Masri, Daniel Hayes, Maoyi Huang, Akihiko Ito, Atul Jain, Anthony W. King, Hiumin Lei, Junjie Liu, Chaoqun (Crystal) Lu, Jaifu Mao, Shushi Peng, Benjamin Poulter, Daniel Ricciuto, Kevin Schaefer, Xiaoying Shi, Bo Tao, Hanqin Tian, Weile Wang, Yaxing Wei, Jia Yang, Ning Zeng

Chaoqun (Crystal) Lu

Multimodel ensembles (MME) are commonplace in Earth system modeling. Here we perform MME integration using a 10-member ensemble of terrestrial biosphere models (TBMs) from the Multiscale synthesis and Terrestrial Model Intercomparison Project (MsTMIP). We contrast optimal (skill based for present-day carbon cycling) versus naïve (“one model-one vote”) integration. MsTMIP optimal and naïve mean land sink strength estimates (−1.16 versus −1.15 Pg C per annum respectively) are statistically indistinguishable. This holds also for grid cell values and extends to gross uptake, biomass, and net ecosystem productivity. TBM skill is similarly indistinguishable. The added complexity of skill-based integration does not materially change …

Large Fluxes And Rapid Turnover Of Mineral-Associated Carbon Across Topographic Gradients In A Humid Tropical Forest: Insights From Paired 14c Analysis, Steven J. Hall, G. Mcnicol, T. Natake, W. L. Silver

Steven J. Hall

It has been proposed that the large soil carbon (C) stocks of humid tropical forests result predominantly from C stabilization by reactive minerals, whereas oxygen (O2) limitation of decomposition has received much less attention. We examined the importance of these factors in explaining patterns of C stocks and turnover in the Luquillo Experimental Forest, Puerto Rico, using radiocarbon (14C) measurements of contemporary and archived samples. Samples from ridge, slope, and valley positions spanned three soil orders (Ultisol, Oxisol, Inceptisol) representative of humid tropical forests, and differed in texture, reactive metal content, O2 availability, and root biomass. Mineral-associated C comprised the …

Tb196: Temperature, Soil Moisture, And Streamflow At The Bear Brook Watershed In Maine (Bbwm), Ivan J. Fernandez, Joseph E. Karem, Stephen A. Norton, Lindsey E. Rustad

Ivan J. Fernandez

The Bear Brook Watershed in Maine is a whole-ecosystem chemical manipulation initiated in 1987 to study the effects of acid deposition on forests and surface waters. The focus of this research was to understand the biogeochemical response of watersheds with emphasis on chemistry and hydrology. In 2001 a program was initiated to provide more detailed measurements of temperature and moisture to examine critical linkages amongst chemical, biological, and physical processes that ultimately work together to define ecosystem function. The purpose of this publication is to provide data from the initial phase of soil temperature, air temperature, and soil moisture measurements …

Global Methane And Nitrous Oxide Emissions From Terrestrial Ecosystems Due To Multiple Environmental Changes, Hanqin Tian, Guangsheng Chen, Chaoqun (Crystal) Lu, Xiaofeng Xu, Wei Ren, Bowen Zhang, Kamaljit Banger, Bo Tao, Shufen Pan, Mingliang Liu, Chi Zhang, Lori Bruhwiler, Steven Wofsy

Chaoqun (Crystal) Lu

Greenhouse gas (GHG)-induced climate change is among the most pressing sustainability challenges facing humanity today, posing serious risks for ecosystem health. Methane (CH4) and nitrous oxide (N2O) are the two most important GHGs after carbon dioxide (CO2), but their regional and global budgets are not well known. In this study, we applied a process-based coupled biogeochemical model to concurrently estimate the magnitude and spatial and temporal patterns of CH4 and N2O fluxes as driven by multiple environmental changes, including climate variability, rising atmospheric CO2, increasing nitrogen deposition, tropospheric ozone pollution, land use change, and nitrogen fertilizer use. The estimated CH4 …

Differential Effects Of Canopy Trimming And Litter Deposition On Litterfall And Nutrient Dynamics In A Wet Subtropical Forest, Steven J. Hall, Whendee L. Silver, Grizelle González

Steven J. Hall

Humid tropical forests have the highest rates of litterfall production globally, which fuels rapid nutrient recycling and high net ecosystem production. Severe storm events significantly alter patterns in litterfall mass and nutrient dynamics through a combination of canopy disturbance and litter deposition. In this study, we used a large-scale long-term manipulation experiment to explore the separate and combined effects of canopy trimming and litter deposition on litterfall rates and litter nutrient concentrations and content. The deposition of fine litter associated with the treatments was equivalent to more than two times the annual fine litterfall mass and nutrient content in control …

Atmospheric Methane Over The Arctic Ocean: Thermal Ir Satellite And Ship- Based Observations, Leonid Yurganov

Leonid Yurganov

Recent warming of the Arctic stimulated speculations about dissociation of methane hydrates in the Arctic seabed and a new climatic positive feedback. Here, for the first time, methane low tropospheric satellite retrievals over the Arctic from two instruments: AIRS (Atmospheric IR Sounder) and IASI (Infrared Atmospheric Sounding Interferometer) were analyzed. Analyzed are data for areas over open water with high values of the vertical thermal contrast (ThC, defined here as the temperature difference between the surface and altitude of 4 km); they have been found to be reliable. The seasonal cycles of the data well correlate with the cycles measured …

The Contribution Of Fe (Iii) And Humic Acid Reduction To Ecosystem Respiration In Drained Thaw Lake Basins Of The Arctic Coastal Plain, David A. Lipson, Ted K. Raab, Dominic Goria, Jaime Zlamal

Ted K. Raab

Previous research showed that anaerobic respiration using iron (Fe) oxides as terminal electron acceptor contributed substantially to ecosystem respiration (ER) in a drained thaw lake basin (DTLB) on the Arctic coastal plain. As DTLB age, the surface organic layer thickens, progressively burying the Fe-rich mineral layers. We therefore hypothesized that Fe (III) availability and Fe reduction would decline with basin age. We studied four DTLB across an age gradient, comparing seasonal changes in the oxidation state of dissolved and extractable Fe pools and the estimated contribution of Fe reduction to ER. The organic layer thickness did not strictly increase with …

Biogeochemical Evidence For Hydrologic Change During The Holocene In A Lake Sediment Record From Southeast Greenland, Nicholas L. Balascio, William J. D'Andrea, Raymond S. Bradley, Bianca B. Perren

Raymond S Bradley

Holocene paleoclimate records from Greenland help us understand the response of the Greenland Ice Sheet and regional oceanic and atmospheric circulation systems to natural climate variability in order to place recent changes in a longer-term perspective. Here biogeochemical analysis of a lake sediment core from southeast Greenland is used to define changes in moisture balance and runoff during the Holocene in a catchment near the margin of the Greenland Ice Sheet. A 1.6 m sediment core that spans the last 8.8 ka was recovered from Flower Valley Lake on Ammassalik Island. Magnetic susceptibility, diatoms, bulk biogeochemical properties (TOC, C/N, δ13Corg), …

Biomarker And Sedimentological Investigations Of Mis 8 Through Mis 12 From Lake El'gygytgyn, Ne Arctic Russia, Jeremy H. Wei, Julie Brigham-Grette, David Finkelstein, Isla S. Castañeda

Jeremy H Wei

Multiple proxy analysis of lake sediment records are crucial for understanding changes in environmental and climate conditions over historical and geological time. Most recently, the use of biomarker proxies coupled with sedimentological investigations provides a new approach for gaining insight into the lake processes that capture information about past climate change. This approach is applied here to better understand the paleoclimate record from Lake El’gygytgyn in Western Beringia. Multiple organic geochemical compound concentrations were measure as proxies for both aquatic and terrestrial biological productivity. Measurements of n-alkane (plant leaf waxes) as well as concentrations of the compounds arborinol (marker for …

Evidence That Glucose Is The Major Transferred Metabolite In Dinoflagellate–Cnidarian Symbiosis, Matthew S. Burriesci, Ted K. Raab, John R. Pringle

Ted K. Raab

Reef-building corals and many other cnidarians are symbiotic with dinoflagellates of the genus Symbiodinium. It has long been known that the endosymbiotic algae transfer much of their photosynthetically fixed carbon to the host and that this can provide much of the hostʼs total energy. However, it has remained unclear which metabolite(s) are directly translocated from the algae into the host tissue. We reexamined this question in the small sea anemone Aiptasia using labeling of intact animals in the light with 13C-bicarbonate, rapid homogenization and separation of animal and algal fractions, and analysis of metabolite labeling by gas chromatography-mass spectrometry. We …

Water Table Height And Microtopography Control Biogeochemical Cycling In An Arctic Coastal Tundra Ecosystem, David A. Lipson, Donatella Zona, Ted K. Raab, Francis Bozzolo, Marguerite Mauritz, Walter C. Oechel

Ted K. Raab

Drained thaw lake basins (DTLB’s) are the dominant land form of the Arctic Coastal Plain in northern Alaska. The presence of continuous permafrost prevents drainage and so water tables generally remain close to the soil surface, creating saturated, suboxic soil conditions. However, ice wedge polygons produce microtopographic variation in these landscapes, with raised areas such as polygon rims creating more oxic microenvironments. The peat soils in this ecosystem store large amounts of organic carbon which is vulnerable to loss as arctic regions continue to rapidly warm, and so there is great motivation to understand the controls over microbial activity in …

Evaluating Holocene Climate Change In Northern Norway Using Sediment Records From Two Contrasting Lake Systems., Nicholas L. Balascio, Raymond S. Bradley

Raymond S Bradley

We analyzed Holocene sedimentary records from two lakes in the Lofoten Islands, northern Norway to evaluate environmental changes during the Holocene related to northern North Atlantic climate dynamics. The lakes are located in different geomorphological settings, and thus provide a contrast in their response to regional climate change. Environmental changes at both lakes were interpreted based on magnetic susceptibility, organic-matter flux, C/N, d13 Corg , Ti concentrations, and mass accumulation rates. Chronologies were established using 16 AMS radiocarbon dates, and average deposition rates in both environments are higher than 0.2 mm/year throughout the Holocene. At Vikjordvatnet, sedimentary geochemical properties define …

Biogeochemical Evidence For Prehistoric Human Impacts On The Environment In Northwestern Norway, Raymond S. Bradley, Robert D'Anjou, Nicholas L. Balascio, David B. Finkelstein

Raymond S Bradley

Disentangling the effects of climate change and anthropogenic activities on the environment is a major challenge in paleoenvironmental research. Here, we used fecal sterols and other biogeochemical compounds in lake sediments from northern Norway to identify both natural and anthropogenic signals of environmental change during the late Holocene. The area was first occupied by humans and their grazing animals at ∼2,250 ± 75 calendar years before 1950 AD (calendar years before present). The arrival of humans is indicated by an abrupt increase in coprostanol (and its epimer epicoprostanol) in the sediments and an associated increase in 5β-stigmastanol (and 5β-epistigmastanol), which …

A Mild Little Ice Age And Unprecedented Warmth In An 1800 Year Record From Svalbard, William J. D'Andrea, Raymond S. Bradley, David Vaillencourt, Nicholas L. Balascio, Al Werner, Steve Roof, Michael J. Retelle

Raymond S Bradley

The Arctic region is subject to a great amplitude of climate variability and is currently undergoing large-scale changes due in part to anthropogenic global warming. Accurate projections of future change depend on anticipating the response of the Arctic climate system to forcing, and understanding how the response to human forcing will interact with natural climate variations. The Svalbard Archipelago occupies an important location for studying patterns and causes of Arctic climate variability; however, available paleoclimate records from Svalbard are of restricted use due to limitations of existing climate proxies. Here we present a sub-decadal- to multidecadal-scale record of summer temperature …

Using Equal‐Area Quadratic Splines To Compute Depth‐ Weighted Averages Of Soil Chemical Parameters, Chris E. Johnson, Jeremy Tamargo

Chris E Johnson

No abstract provided.

A Multi-Proxy Approach To Assessing Isolation Basin Stratigraphy From The Lofoten Islands, Norway, Nicholas L. Balascio, Zhaohui Zhang, Raymond S. Bradley, Bianca B. Perren, Svein-Olaf Dahl, Jostein Bakke

Raymond S Bradley

This study takes a comprehensive approach to characterizing the isolation sequence of Heimerdalsvatnet, a coastal lake in the Lofoten Islands, northern Norway. We use established methods and explore new techniques to assess changes in marine influence. Bathymetric and sub-bottom profiles were acquired to examine basin-wide sedimentation and a 5.8 m sediment core spanning the last 7800 cal yr BP was analyzed. We measured magnetic susceptibility, bulk organic matter properties, molecular biomarkers, diatom assemblages, and elemental profiles acquired by scanning X-ray fluorescence. These characteristics of the sediment reflect detailed changes in salinity and water column conditions as the lake was progressively …

Reduction Of Iron (Iii) And Humic Substances Plays A Major Role In Anaerobic Respiration In An Arctic Peat Soil, David A. Lipson, Mony Jha, Ted K. Raab, Walter C. Oechel

Ted K. Raab

Arctic peat soils contain vast reserves of organic C and are largely anaerobic. However, anaerobic respiration, particularly the role of Fe(III) and humic substances as electron acceptors, is not well understood in such ecosystems. We investigated these processes in a drained thaw lake basin on the Arctic coastal plain near Barrow, Alaska. We measured concentrations of soluble Fe and other potential electron acceptors, described the microbial community, and performed experiments in the laboratory and field to measure net rates of Fe(III) reduction and the relationship of this process to C cycling. In most areas within the basin, aerobic conditions existed …

The Rhizosphere: A Synchrotron- Based View Of Nutrient Flow In The Root Zone, Theodore K. Raab, David A. Lipson

Ted K. Raab

At two energy “endpoints” of the EM spectrum accessible to synchrotron biologists (IR radiation and soft X-rays), we have found experimental methods providing unique opportunities to observe processes and test hypotheses essential to understanding plantsoil- microbe interactions. Availability of IR synchrotron beamlines will continue to expand worldwide, and we hope that plant and microbial biologists will incorporate the type of spectral data presented in this chapter as just one of a legion of “-omics” methods. Considering the shear flux of C through belowground ecosystems annually (and how poorly constrained they are in many regions), synchrotrons must continue to demand the …

Meta-Analysis Of Fertilization Experiments Indicates Multiple Limiting Nutrients In Northeastern Deciduous Forests, Matthew A. Vadeboncoeur

Matthew A Vadeboncoeur

It is widely accepted that N limits primary production in temperate forests, although colimitation by N and P has also been suggested, and on some soils, Ca and base cations are in short supply. I conducted a meta-analysis to assess the strength of existing experimental evidence for limitation of primary production by N, P, and Ca in hardwood forests of the northeastern United States and southeastern Canada using data from 35 fertilization experiments in deciduous forests on glaciated soils across the region.

There is strong evidence for N limitation (formal meta-analysis weighted mean response ratio = 1.51, p < 0.01; simple mean = 1.42, p < 0.001). Forest productivity also tended to increase with additions of P (simple mean = 1.15, p = 0.05) and Ca (simple mean = 1.36, p < 0.001). Across all treatments, 85% of response ratios were positive. Multiple-element additions had larger effects than single elements, but factorial experiments showed little evidence of synergistic effects between nutrient additions. Production responses correlated positively with the rate of N fertilization, but this effect was reduced at high rates of ambient N deposition.

In The Heat Of The Law, It's Not Just Steam: Geothermal Resources And The Impact On Thermophile Biodiversity, Donald J. Kochan, Tiffany Grant

Donald J. Kochan

Significant research has been conducted into the utilization of geothermal resources as a ‘green’ energy source. However, minimal research has been conducted into geothermal resource utilization and depletion impacts on thermophile biodiversity. Thermophiles are organisms which have adapted over millions of year to extreme temperature and chemical compositions and exist in hot springs and other geothermal resources. Their ability to withstand high temperatures makes them invaluable to scientific and medical research. Current federal and California case law classify geothermal resources as a mineral, not a water resource. Acquisition of rights to develop a geothermal resource owned or reserved by the …

Ecological And Agricultural Applications Of Synchrotron Ir Microscopy, Ted K. Raab, John P. Vogel

Ted K. Raab

The diffraction-limited spot size of synchrotron-based IR microscopes provides cell-specific, spectrochemical imaging of cleared leaf, stem and root tissues of the model genetic organism Arabidopsis thaliana, and mutant plants created either by T-DNA insertional inactivation or chemical mutagenesis. Spectra in the wavelength region from 6 to 12 microns provide chemical and physical information on the cell wall polysaccharides of mutants lacking particular biosynthetic enzymes (‘‘Cellulose synthase-like’’ genes). In parallel experiments, synchrotron IR microscopy delineates the role of Arabidopsis cell wall enzymes as susceptibility factors to the fungus Erysiphe cichoracearum, a causative agent of powdery mildew disease. Three genes, pmr4, pmr5, …

Pmr6, A Pectate Lyase–Like Gene Required For Powdery Mildew Susceptibility In Arabidopsis, John P. Vogel, Ted K. Raab, Celine Schiff, Shauna C. Somerville

Ted K. Raab

The plant genes required for the growth and reproduction of plant pathogens are largely unknown. In an effort to identify these genes, we isolated Arabidopsis mutants that do not support the normal growth of the powdery mildew pathogen Erysiphe cichoracearum. Here, we report on the cloning and characterization of one of these genes, PMR6. PMR6 encodes a pectate lyase-like protein with a novel C-terminal domain. Consistent with its predicted gene function, mutations in PMR6 alter the composition of the plant cell wall, as shown by Fourier transform infrared spectroscopy. pmr6-mediated resistance requires neither salicylic acid nor the ability to perceive …

Visualizing Rhizosphere Chemistry Of Legumes With Mid-Infrared Synchrotron Radiation, Ted K. Raab, Michael C. Martin

Ted K. Raab

A bright synchrotron light source operated by the Lawrence Berkeley National Laboratory served as an external source for infrared (IR) microscopy of plant root microcosms. Mid-IR light from synchrotrons is 2-3 orders of magnitude brighter than conventional sources, providing contrast based on the chemical information in the reflected signal at a spatial resolution near the diffraction-limit of 3-10 microns. In an experiment using plant root microcosms fitted with zinc selenide IR-transmissive windows (50 mm x 20 mm x 1 mm), we describe chemical differences and similarities within the root zone of mung bean (Vigna radiata L.), grown with or without …

An Empirical Model Of Amino Acid Transformations In An Alpine Soil, David A. Lipson, Ted K. Raab, Steven K. Schmidt, Russ K. Monson

Ted K. Raab

Amino acids are potentially important nitrogen (N) sources for plants in many ecosystems. However, a quantitative understanding of organic N availability is lacking for most ecosystems. This study estimates seasonal amino acid fluxes in an alpine tundra soil using three independent data sets. In previous work in an alpine dry meadow ecosystem in the Front Range of the Colorado Rocky Mountains, we measured signifcant rates of amino acid production from soil peptides during the plant growing season. This suggested that proteolysis of native soil peptides could serve as a measure of amino acid availability to plants. Here we use a …

Soil Amino Acid Utilization Among Species Of The Cyperaceae: Plant And Soil Processes, Ted K. Raab, David A. Lipson, Steven K. Scmidt, Russ K. Monson

Ted K. Raab

Amino acids are released during the decomposition of soil organic matter and have been shown to be utilized as a nitrogen source by some non-mycorrhizal species in the family Cyperaceae (the sedge family). Twelve out of 13 Cyperaceae species examined in the current study were capable of absorbing soil amino acids in the non-mycorrhizal state. With two exceptions (two species in the genus Kobresia), species from subalpine or alpine habitats exhibited lower rates of total nitrogen uptake compared to species from more temperate habitats, which is possibly explained by lower growth rates in the alpine and subalpine species and a …