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Integrating Malaria Surveillance With Climate Data For Outbreak Detection And Forecasting: The Epidemia System, Christopher L. Merkord, Yi Liu, Abere Mihretie, Teklehaymanot Gebrehiwot, Worku Awoke, Estifanos Bayabil, Geoffrey M. Henebry, Gebeyaw T. Kassa, Mastewal Lake, Michael C. Wimberly 2017 South Dakota State University

Integrating Malaria Surveillance With Climate Data For Outbreak Detection And Forecasting: The Epidemia System, Christopher L. Merkord, Yi Liu, Abere Mihretie, Teklehaymanot Gebrehiwot, Worku Awoke, Estifanos Bayabil, Geoffrey M. Henebry, Gebeyaw T. Kassa, Mastewal Lake, Michael C. Wimberly

GSCE Faculty Publications

Background: Early indication of an emerging malaria epidemic can provide an opportunity for proactive interventions. Challenges to the identification of nascent malaria epidemics include obtaining recent epidemiological surveillance data, spatially and temporally harmonizing this information with timely data on environmental precursors, applying models for early detection and early warning, and communicating results to public health officials. Automated web-based informatics systems can provide a solution to these problems, but their implementation in real-world settings has been limited.
Methods: The Epidemic Prognosis Incorporating Disease and Environmental Monitoring for Integrated Assessment (EPIDEMIA) computer system was designed and implemented to integrate disease surveillance with …


Land Change History Of Oil Palm Plantations In Northern Bengkulu Province, Sumatra Island, Reconstructed From Landsat Satellite Archives, Atsushi Tomita 2017 CUNY Graduate Center

Land Change History Of Oil Palm Plantations In Northern Bengkulu Province, Sumatra Island, Reconstructed From Landsat Satellite Archives, Atsushi Tomita

Dissertations, Theses, and Capstone Projects

The aim of this study is to reconstruct the history of land conversion to oil palm plantation in tropical Asia using multi-temporal satellite data. A new method was constructed with a newly developed computer model, Land Change Detection and Land Definition Model (LC/LD Model) to map out spatio-temporal distribution of land changes. A comprehensive, cloud-free Landsat dataset was created from all the available Landsat data from 1988 to 2015. The pixel-based dataset was converted into a polygon-based dataset by applying the multi-temporal image segmentation method. The representation of the spectral information was also reduced to a single index of IB45, …


Subset Data From The Nauru 1999 And African Monsoon Multidisciplinary Analysis (Amma) 2006 Cruise And Matlab Code For Generating Plots For The Paper: Wong And Minnett (2017): The Response Of The Ocean Thermal Skin Layer To Variations In Incident Infrared Radiation., Elizabeth Wong 2017 University of Miami

Subset Data From The Nauru 1999 And African Monsoon Multidisciplinary Analysis (Amma) 2006 Cruise And Matlab Code For Generating Plots For The Paper: Wong And Minnett (2017): The Response Of The Ocean Thermal Skin Layer To Variations In Incident Infrared Radiation., Elizabeth Wong

Supplementary Data and Tools

Data in this collection is largely comprised of subsetted data from two research cruises, the Nauru cruise held from June to July 1999 and the African Monsoon Multidisciplinary Analysis (AMMA) cruise held from May to July 2006. The data subset is limited to night conditions under low wind speeds of < 10 m/s and consists of the surface fluxes, radiance measurements from the Marine Atmospheric Emitted Radiance Interferometer (M-AERI), the retrievals of the skin sea surface temperatures and skin sea surface temperature profiles from the M-AERI's radiance spectral measurements. Also included are line-by-line-radiative transfer simulations provided by Dr. Goshka Szczodrak, transmission coefficient spectra obtained from the HITRAN database, and wind speed data from the Special Sensing Microwave Imager (SSM/I) version 6. provided by Dr. Chelle Gentemann. Matlab code is provided which reads the datafile (DATA.mat) and outputs the figures illustrated in the paper Wong and Minnett (2017) (https://doi.org/10.1002/2017JC013351).


Multi-Year Modis Active Fire Type Classification Over The Brazilian Tropical Moist Forest Biome, David P. Roy, S. S. Kumar 2017 South Dakota State University

Multi-Year Modis Active Fire Type Classification Over The Brazilian Tropical Moist Forest Biome, David P. Roy, S. S. Kumar

GSCE Faculty Publications

The Brazilian Tropical Moist Forest Biome (BTMFB) spans almost 4 million km2 and is subject to extensive annual fires that have been categorized into deforestation, maintenance, and forest fire types. Information on fire types is important as they have different atmospheric emissions and ecological impacts. A supervised classification methodology is presented to classify the fire type of MODerate resolution Imaging Spectroradiometer (MODIS) active fire detections using training data defined by consideration of Brazilian government forest monitoring program annual land cover maps, and using predictor variables concerned with fuel flammability, fuel load, fire behavior, fire seasonality, fire annual frequency, proximity …


Novel Methods For Quantifying Spatio-Temporal Change In Glaciated And Subaqueous Environments, Jordan Mertes 2017 Michigan Technological University

Novel Methods For Quantifying Spatio-Temporal Change In Glaciated And Subaqueous Environments, Jordan Mertes

Dissertations, Master's Theses and Master's Reports

In many scientific fields, it is important to actively develop new approaches to monitoring and quantifying changes within different systems. Often adapting existing tools or applying techniques from alternative fields can greatly improve our ability to monitor spatial and temporal changes. In this dissertation, I present four studies aimed at demonstrating new innovative ways at improving our ability to observe and quantify changes occurring on glaciers, submerged cultural resources (SCRs) and supraglacial lakes by using technology such as Structure from Motion + Multi-view stereo photogrammetry (SfM) and ground penetrating radar (GPR) surveying combined with facies analysis.

I have successfully reconstructed …


Using Remote Sensing To Estimate Crop Water Use To Improve Irrigation Water Management, Arturo Reyes-Gonzalez 2017 South Dakota State University

Using Remote Sensing To Estimate Crop Water Use To Improve Irrigation Water Management, Arturo Reyes-Gonzalez

Electronic Theses and Dissertations

Irrigation water is scarce. Hence, accurate estimation of crop water use is necessary for proper irrigation managements and water conservation. Satellite-based remote sensing is a tool that can estimate crop water use efficiently. Several models have been developed to estimate crop water requirement or actual evapotranspiration (ETa) using remote sensing. One of them is the Mapping EvapoTranspiration at High Resolution using Internalized Calibration (METRIC) model. This model has been compared with other methods for ET estimations including weighing lysimeters, pan evaporation, Bowen Ratio Energy Balance System (BREBS), Eddy Covariance (EC), and sap flow. However, comparison of METRIC model outputs to …


Examination Of The Potential Of Structure-From-Motion Photogrammetry And Terrestrial Laser Scanning For Rapid Nondestructive Field Measurement Of Grass Biomass, Sam D. Cooper 2017 South Dakota State University

Examination Of The Potential Of Structure-From-Motion Photogrammetry And Terrestrial Laser Scanning For Rapid Nondestructive Field Measurement Of Grass Biomass, Sam D. Cooper

Electronic Theses and Dissertations

Above ground biomass (AGB) is a parameter commonly used for assessment of grassland systems. While destructive sampling of AGB is highly accurate, it is time consuming and often precludes repeat temporal sampling or sampling in sensitive ecosystems. Consequently, a number of nondestructive techniques that relate grass structural properties to AGB have been developed. This study investigated the application of two recent technologies, Terrestrial Laser Scanning (TLS) and Structurefrom- Motion (SfM), in the development of rapid nondestructive AGB estimation of grassland plots. TLS and SfM volume metrics generated using a rasterized surface differencing method were linearly related to destructively measured total …


Land Surface Phenologies And Seasonalities Using Cool Earthlight In Temperate And Tropical Croplands, Woubet Gashaw Alemu 2017 South Dakota State University

Land Surface Phenologies And Seasonalities Using Cool Earthlight In Temperate And Tropical Croplands, Woubet Gashaw Alemu

Electronic Theses and Dissertations

In today’s world of increasing food insecurity due to more frequent and extreme events (droughts, floods), a comprehensive understanding of global cropland dynamics is critically needed. Land surface parameters derived from the passive microwave Advanced Microwave Scanning Radiometer on EOS (AMSR-E) and AMSR2 data enable monitoring of cropland dynamics and they can complement visible to near infrared (VNIR) and thermal infrared (TIR) data. Passive microwave data are less sensitive to atmospheric effects, cloud contamination, and solar illumination constraints resulting in finer temporal resolution suitable to track the temporal progression of cropland cover development compared to the VNIR data that has …


Monitoring Pollen Counts And Pollen Allergy Index Using Satellite Observations In East Coast Of The United States, Murat Cagatay Kececi 2017 South Dakota State University

Monitoring Pollen Counts And Pollen Allergy Index Using Satellite Observations In East Coast Of The United States, Murat Cagatay Kececi

Electronic Theses and Dissertations

Allergic diseases have become increasingly common over the world during the last four decades, and they are affecting millions of people. Pollination is an important process in the life cycle of plants. However, pollen exposure is associated with allergic diseases such as asthma and seasonal allergic rhinitis (hay fever). As a result, the total annual expenditure for asthma-associated morbidity is about $56 billion in the United States, and the overall cost of allergic diseases is over $18 billion annually. For allergic rhinitis, the annual medical cost is approximately $3.4 billion. The intensity and frequency of the pollen exposures can be …


Normalization Of Pseudo-Invariant Calibration Sites For Increasing The Temporal Resolution And Long-Term Trending, Harika Vuppula 2017 South Dakota State University

Normalization Of Pseudo-Invariant Calibration Sites For Increasing The Temporal Resolution And Long-Term Trending, Harika Vuppula

Electronic Theses and Dissertations

Given their low level of temporal, spatial, and spectral variability, Pseudo-Invariant Calibration Sites (PICS) have been increasingly desired as data sources for radiometric calibration of Earth imaging satellite sensors. The temporal resolution for PICS data acquired by any sensor is limited by the amount of time required for it to make subsequent passes over the site. Consequently, for any given PICS, it can take many years of imaging to develop a sufficient amount of cloud-free data to perform radiometric calibration; this can be especially problematic for sensors in their early years after launch. This thesis presents techniques to combine Landsat-8; …


Determination And Analysis Of Dscovr-Eipc Satellite-Retrieved Radiance From Cloud Geometric And Optical Properties, Emily Christine Morgan 2017 University at Albany, State University of New York

Determination And Analysis Of Dscovr-Eipc Satellite-Retrieved Radiance From Cloud Geometric And Optical Properties, Emily Christine Morgan

Legacy Theses & Dissertations (2009 - 2024)

Using simulations and numerical fitting, this work sought to describe the satellite-retrieved radiance of clouds as a function of their thermodynamic and optical properties. Subsequently, this understanding can then be used in a look-up-table to determine the properties of clouds imaged by the EPIC sensor in the NASA DSCOVR satellite. In this study, background oxygen absorption was modeled in a radiative transfer model and convolved with EPIC filter functions for two absorption-reference pairs for Oxygen A- and B-band. This absorption profile was established as the primary vertical coordinate in this study, leveraging the similarity principle to allow for intercomparison of …


Experimental Evaluation Of Several Key Factors Affecting Root Biomass Estimation By 1500 Mhz Ground-Penetrating Radar, John C. Bain, Frank P. Day, John R. Butnor 2017 Old Dominion University

Experimental Evaluation Of Several Key Factors Affecting Root Biomass Estimation By 1500 Mhz Ground-Penetrating Radar, John C. Bain, Frank P. Day, John R. Butnor

Biological Sciences Faculty Publications

Accurate quantification of coarse roots without disturbance represents a gap in our understanding of belowground ecology. Ground penetrating radar (GPR) has shown significant promise for coarse root detection and measurement, however root orientation relative to scanning transect direction, the difficulty identifying dead root mass, and the effects of root shadowing are all key factors affecting biomass estimation that require additional research. Specifically, many aspects of GPR applicability for coarse root measurement have not been tested with a full range of antenna frequencies. We tested the effects of multiple scanning directions, root crossover, and root versus soil moisture content in a …


Remote Sensing Observation Of Annual Dust Cycles And Possible Causality Of Kawasaki Disease Outbreaks In Japan, Hesham el-Askary, Nick LaHaye, Erik J. Linstead, William A. Sprigg, Magdi Yacoub 2017 Chapman University

Remote Sensing Observation Of Annual Dust Cycles And Possible Causality Of Kawasaki Disease Outbreaks In Japan, Hesham El-Askary, Nick Lahaye, Erik J. Linstead, William A. Sprigg, Magdi Yacoub

Mathematics, Physics, and Computer Science Faculty Articles and Research

Kawasaki disease (KD) is a rare vascular disease that, if left untreated, can result in irreparable cardiac damage in children. While the symptoms of KD are well-known, as are best practices for treatment, the etiology of the disease and the factors contributing to KD outbreaks remain puzzling to both medical practitioners and scientists alike. Recently, a fungus known as Candida, originating in the farmlands of China, has been blamed for outbreaks in China and Japan, with the hypothesis that it can be transported over long ranges via different wind mechanisms. This paper provides evidence to understand the transport mechanisms …


Utilization Of Landsat Imagery To Assess The Impacts Of Oil And Gas Extraction On The Tazovsky Peninsula, Siberia, Nicholas B. Kline 2017 University of Montana

Utilization Of Landsat Imagery To Assess The Impacts Of Oil And Gas Extraction On The Tazovsky Peninsula, Siberia, Nicholas B. Kline

Graduate Student Theses, Dissertations, & Professional Papers

Climatic warming of the Arctic is leading to landscape change through cascading biophysical feedbacks; development, such as oil and gas exploration and extraction, can accelerate or worsen these impacts. Due to restricted access to oil and natural gas fields, in situ environmental impact studies are only allowed in some regions. Satellite imagery analysis provides a mean for assessing impacts in areas with limited access. The Yamburg oil and gas field in western Siberia serves as a case study to assess the effects of infrastructure on an Arctic landscape.

This project quantifies the land-cover disturbance that occurred during the development and …


Remote Sensing Of World War Ii Era Unexploded Bombs Using Object-Based Image Analysis And Multi-Temporal Datasets: A Case Study Of The Fort Myers Bombing And Gunnery Range, Bryan Byholm 2017 Minnesota State University, Mankato

Remote Sensing Of World War Ii Era Unexploded Bombs Using Object-Based Image Analysis And Multi-Temporal Datasets: A Case Study Of The Fort Myers Bombing And Gunnery Range, Bryan Byholm

All Graduate Theses, Dissertations, and Other Capstone Projects

During World War II, United States Army and Navy pilots trained on several hundred bombing ranges encompassing more than 12 million acres of land, leaving behind crater-scarred landscapes across the country. Post-war estimates suggest that 10-15% of aerial bombs used failed to detonate as intended, so these areas today are contaminated by a large number of dangerous unexploded bombs (UXB) which remain under the surface. Until recently, detecting UXB has been a tedious and expensive process done in three stages: (1) identifying and mapping general areas of concentrated bomb craters using historical air photos and records; (2) intensely searching these …


Advancing High Spatial And Spectral Resolution Remote Sensing For Observing Plant Community Response To Environmental Variability And Change In The Alaskan Arctic, Sergio Armando Vargas 2017 University of Texas at El Paso

Advancing High Spatial And Spectral Resolution Remote Sensing For Observing Plant Community Response To Environmental Variability And Change In The Alaskan Arctic, Sergio Armando Vargas

Open Access Theses & Dissertations

The Arctic is being impacted by climate change more than any other region on Earth. Impacts to terrestrial ecosystems have the potential to manifest through feedbacks with other components of the Earth System. Of particular concern is the potential for the massive store of soil organic carbon to be released from arctic permafrost to the atmosphere where it could exacerbate greenhouse warming and impact global climate and biogeochemical cycles. Even though substantial gains to our understanding of the changing Arctic have been made, especially over the past decade, linking research results from plot to regional scales remains a challenge due …


Estimating Energy Fluxes And Evapotranspiration Of Corn And Soybean With An Unmanned Aircraft System In Ames, Iowa, Áthila Gevaerd Montibeller 2017 University of Northern Iowa

Estimating Energy Fluxes And Evapotranspiration Of Corn And Soybean With An Unmanned Aircraft System In Ames, Iowa, Áthila Gevaerd Montibeller

Dissertations and Theses @ UNI

Evapotranspiration (ET) is a key hydrological variable and has been studies to plan irrigation schedule, understand surface-atmospheric interactions, assess crop sensitivity to droughts, etc. On top of that, ET is a proxy for evaluating water availability in trees canopies and assess soil moisture content. The recent advent of the Unmanned Aircraft Systems (UAS) has presented new opportunities and challenges in mapping ET at a much finer scale and under various atmospheric conditions. In this research, we integrate traditional remote sensing techniques with the novel UAS technology to estimate ET and surface energy fluxes for a corn and soybean field near …


Unmanned Aerial Vehicle Based Structure From Motion Biomass Inventory Estimates, Emily Jane Bedell 2016 Portland State University

Unmanned Aerial Vehicle Based Structure From Motion Biomass Inventory Estimates, Emily Jane Bedell

Dissertations and Theses

Riparian vegetation restoration efforts demand cost effective, accurate, and replicable impact assessments. In this thesis a method is presented using an Unmanned Aerial Vehicle (UAV) equipped with a GoPro digital camera to collect photogrammetric data of a 2.02-acre riparian restoration. A three-dimensional point cloud was created from the photos using Structure from Motion (SfM) techniques. The point cloud was analyzed and compared to traditional, ground-based monitoring techniques. Ground truth data collected using the status-quo approach was collected on 6.3% of the study site and averaged across the entire site to report stem heights in stems/acre in three height classes, 0-3 …


Landsat 5 Thematic Mapper Reflectance And Ndvi 27-Year Time Series Inconsistencies Due To Satellite Orbit Change, Hankui Zhang, David P. Roy 2016 South Dakota State University

Landsat 5 Thematic Mapper Reflectance And Ndvi 27-Year Time Series Inconsistencies Due To Satellite Orbit Change, Hankui Zhang, David P. Roy

GSCE Faculty Publications

The Landsat 5 Thematic Mapper (TM) sensor provided the longest single mission terrestrial remote sensing data record but temporally sparse station keeping maneuvers meant that the Landsat 5 orbit changed over the 27 year mission life. Long-term Landsat 5 TM reflectance inconsistencies may be introduced by orbit change induced solar zenith variations combined with surface reflectance anisotropy, commonly described by the Bi-directional Reflectance Distribution Function (BRDF). This study quantifies the local overpass time and observed solar zenith angle changes for all the Landsat 5 TM images available at two latitudinally separated locations along the same north-south Landsat path (27) in …


Characterizing Cropland Phenology In Major Grain Production Areas Of Russia, Ukraine, And Kazakhstan By The Synergistic Use Of Passive Microwave And Visible To Near Infrared Data, Woubet G. Alemu, Geoffrey M. Henebry 2016 South Dakota State University

Characterizing Cropland Phenology In Major Grain Production Areas Of Russia, Ukraine, And Kazakhstan By The Synergistic Use Of Passive Microwave And Visible To Near Infrared Data, Woubet G. Alemu, Geoffrey M. Henebry

GSCE Faculty Publications

We demonstrate the synergistic use of surface air temperature retrieved from AMSR-E (Advanced Microwave Scanning Radiometer on Earth observing satellite) and two vegetation indices (VIs) from the shorter wavelengths of MODIS (MODerate resolution Imaging Spectroradiometer) to characterize cropland phenology in the major grain production areas of Northern Eurasia from 2003–2010. We selected 49 AMSR-E pixels across Ukraine, Russia, and Kazakhstan, based on MODIS land cover percentage data. AMSR-E air temperature growing degree-days (GDD) captures the weekly, monthly, and seasonal oscillations, and well correlated with station GDD. A convex quadratic (CxQ) model that linked thermal time measured as growing degree-days to …


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