Physics Commons^™

Live Cell Super-Resolution Microscopy Quanitifies An Interaction Between Influenza Hemagglutinin And Phosphatidylinositol 4,5-Bisphosphate, Jaqulin N. Wallace

Electronic Theses and Dissertations

Influenza virus, colloquially known as the flu, is an acute respiratory disease that infects several millions of individuals each year in the U.S. and kills tens of thousands of those infected. Yearly viral vaccines are widely available, however, due to the virus’s high mutation rate, their efficacy varies greatly. Due to the variability in vaccine efficiency against seasonal influenza, and the potential for even more pathogenic versions of influenza to emerge at any time, there is a high demand for a universal treatment option.

Influenza virus hijacks a variety of host cell components in order to replicate. The glycoprotein hemagglutinin …

Parametric Model Development For Heterogeneous Atmospheric Conditions, Daniel Paul Greenway

Electronic Theses and Dissertations

No abstract provided.

Development And Applications Of Condensed Phase Cavity Ring-Down Spectroscopy For Studies Of Electrochemical And Interfacial., Shadi Ahmad Alnaanah

Electronic Theses and Dissertations

This dissertation reports the development of ultra-sensitive platforms based on the laser cavity ring-down spectroscopic (CRDS) technique to enable optical and spectroelectrochemical investigations in the condensed phase of matter at challenging scenarios. Firstly, an electrically-active solid/liquid interface for the evanescent-wave cavity ring-down spectroscopy (EW-CRDS) was developed to specroelectrochemically investigate redox events. By coating the interface of total internal reflection of the EW-CRDS platform with a high quality optically transparent and electrically conductive indium tin oxide thin film (ITO), we demonstrated that sufficiently long ring-down times can be achieved to allow for spectroelectrochemical investigations of redox species at solid/liquid interfaces at …

Exploring Information For Quantum Machine Learning Models, Michael Telahun

Electronic Theses and Dissertations

Quantum computing performs calculations by using physical phenomena and quantum mechanics principles to solve problems. This form of computation theoretically has been shown to provide speed ups to some problems of modern-day processing. With much anticipation the utilization of quantum phenomena in the field of Machine Learning has become apparent. The work here develops models from two software frameworks: TensorFlow Quantum (TFQ) and PennyLane for machine learning purposes. Both developed models utilize an information encoding technique amplitude encoding for preparation of states in a quantum learning model. This thesis explores both the capacity for amplitude encoding to provide enriched state …

Biophysical And Stable Isotopic Profiles Of The Salmon Louse Lepeophtheirus Salmonis (Krøyer, 1837), Emma Taccardi

Electronic Theses and Dissertations

The salmon louse Lepeophtheirus salmonis is a parasitic copepod that infects wild and farmed salmonids throughout the northern hemisphere. L. salmonis represents the largest economic hurdle of the Atlantic salmon (Salmo salar) industry, with an estimated annual cost of nearly $1 billion globally due to production losses and anti-parasitic control measures. Salmon farming in Maine has existed for decades and is a critical economic driver, yet the region is underrepresented in global sea lice research. The aim of this work was to examine parasites in the context of animal trophic transfer and characterize physiological condition by quantifying the …

Understanding The Magnetic Properties Of Ii-Vi Semiconductor Nanocrystals, Alex Khammang

Electronic Theses and Dissertations

Semiconductor nanocrystals (NC) are well known for their unique size tunable optical properties making them suitable candidates for devices such as light emitting diodes (LEDs), solar cells, and cellular labels. II-VI semiconductors in the bulk form behave diamagnetically, but can inherit paramagnetic (PM) or ferromagnetic (FM) properties at the nanoscale. Reports suggest that the emergence of weak PM or FM behavior in undoped NCs are attributed to the increased surface to volume ratio compared for NCs. Traditionally, these NCs only obtain magnetic properties after doping with certain transition metals, such as Co, Mn, or Fe. Many mechanisms have been proposed …

A Structural Study Of Correlated Materials: Incipient Mott Insulators And Low-Dimensional Systesm., Alaa Alfailakawi

Electronic Theses and Dissertations

Current theories of high-temperature superconductivity suggest that electrons must organize into Cooper pairs in order for a material to exhibit a superconducting phase. Electrons in insulators experience significant repulsive interactions that tend to keep electrons localized at atomic positions. In contrast, electrons in metals are delocalized, interact weakly, and are free to conduct electricity. Therefore, the formation of Cooper pairs should have different mechanisms for metals compared to insulators. This contrast raises the debate about the origin of high-temperature superconductivity in iron-based material, whether it depends on the strong or weak coupling. Many iron-based materials are metallic in the normal …

Search For New Physics Using Lepton Flavor Violating Signatures In Modern Particle Colliders., Atanu Pathak

Electronic Theses and Dissertations

Charged lepton flavor violation is a clear signal of new physics. Such decays are not allowed in the Standard Model but highly anticipated in a large class of new physics models. A direct search for lepton flavor violation in decays of the Higgs boson with the ATLAS detector at the LHC is presented here. The analysis is performed in the H → l tau channel, where the leading lepton (l) can be either an electron or a muon, and the tau lepton decays into an opposite flavored lighter lepton or via the hadronic decay channel. Published results of this search …

Electrochemically-Modulated Surface Plasmon Waves At A Nano-Scale For Investigations And Applications Of Redox Assemblies., Aymen Hasan Qatamin

Electronic Theses and Dissertations

In this thesis, an electrochemically-modulated surface plasmon resonance (EC-SPR) technique was developed for challenging investigations and applications in different redox assemblies. The principle of the technique is based on the nano-scale confined and sensitive interplay between a surface plasmon wave and a redox-active probe featuring an optical transition when undergoing a faradaic redox process. Such faradaic process is electrochemically controlled by modulating the surface electric potential of the SPR platform to create an optical output signal that is substantially immune to the negative impacts of background environment and enabling the identification and quantification minute properties linked to a molecular event …

A Numerical Survey Of Multi-Planet Systems’ Inclination Excitation And Survival Under The Influence Of An Oblate, Tilted Star, Kathleen M T Schultz

Electronic Theses and Dissertations

Among the many exciting and thought-provoking discoveries facilitated by the Kepler telescope, one of the most puzzling is the very large proportion of systems with only a single transiting planet in them, relative to the number of systems with multiple transiting planets. Given that most of these multis are close together and have low mutual inclinations, and that planetary systems tend to form in such a configuration, the next logical step is to guess that at least some of the singles are part of multi-planet systems with large mutual inclinations between planets, excited by some other object’s gravitational perturbations. A …

Quantification Of Interactions Between Influenza Hemagglutinin And Host Cell Phosphoinositides By Super-Resolution Microscopy, Matthew T. Parent

Electronic Theses and Dissertations

The influenza viral membrane protein hemagglutinin (HA) forms dense nanoscale clusters on host cell plasma membranes (PM), but the mechanisms that direct HA clustering are not well understood. Previous studies have observed HA associated with actin rich regions of the PM, but there are no known direct interactions between HA and actin. Phosphatidylinositol 4,5-biphosphate (PIP2) is a signaling lipid in the PM which can regulate the actin cytoskeleton, and actin comets initiated by PIP2 are known to be exploited by HA to reach the PM of infected cells. PIP2 is also used by other viruses, such as HIV and Ebola, …

Phytoplankton Community Composition In The Surface Ocean: Methods For Detection Using Optical Measurements, Pigment Concentrations, And Flow Cytometry, Alison P. Chase

Electronic Theses and Dissertations

Phytoplankton are microscopic photoautotrophs living in the surface ocean waters and help support all life on earth via photosynthetic production of oxygen. Thousands of species make up the bulk phytoplankton community, and the spatial and temporal distribution of different types of phytoplankton has relevance for many ocean ecosystem questions including marine food web dynamics, and carbon flux and sequestration. Methods to detect phytoplankton community composition (PCC) on the vast scale of the global ocean require estimates of PCC from remote platforms, namely earth-observing satellites. The use of satellite data to observe and interpret PCC in the surface ocean requires significant …

Uav 6dof Simulation And Kalman Filter For Localizing Radioactive Sources, John G. Goulet

Electronic Theses and Dissertations

Unmanned Aerial Vehicles (UAVs) expand the available mission-space for a wide range of budgets. Using MATLAB, this project has developed a six degree of freedom (6DOF) simulation of UAV flight, an Extended Kalman Filter (EKF), and an algorithm for localizing radioactive sources using low-cost hardware. The EKF uses simulated low-cost instruments in an effort to estimate the UAV state throughout simulated flight.

The 6DOF simulates aerodynamics, physics, and controls throughout the flight and provides outputs for each time step. Additionally, the 6DOF simulation offers the ability to control UAV flight via preset waypoints or in realtime via keyboard input.

Using …

Particle Injection Simulation On Cold Spray Technology, Christopher A. Santini

Electronic Theses and Dissertations

Computational Fluid Dynamics (CFD) is a useful tool when it comes to research in the fields of Aerodynamics, Turbomachinery, and is used in several other fields of research. CFD is an important tool in the engineering industry because it allows for understanding and evaluation of a new design, this can lead to advancements in developing a more efficient and effective design. This tool helps in the understanding of the flow phenomena and how it can interact with its surroundings. One of the main reasons in the use of CFD is to reduce the cost of testing a design by running …

Investigating New Methods To Develop Perovskite Solar Cells, Amani Hussain Alfaifi

Electronic Theses and Dissertations

Discovering the potential of organic-inorganic metal halide perovskites (MHP) as a harvesting material in solar cells has strongly affected the research direction in solar energy. The fascinating optical and electronic properties offered by MHP combined with tremendous effort from scientists around the world have improved the efficiency to about 25% in a decade.

In the first part of the dissertation, we studied the lamination process as a new fabrication method for producing self-encapsulated perovskite solar cells based on laminating half stacks,as opposed to the conventional layer-by-layer method. Our work focused on optimizing the lamination process of complex triple cations perovskite …

Examining Artifacts Of The Watershed Segmentation, Emily Jo Armitage

Electronic Theses and Dissertations

The watershed segmentation is an algorithm used to systematically track cell intercalary behaviors during germ band extension of the Drosophila embryo. Neighboring cells share a contracting vertical interface, called a T1, which continues contracting to a single point, a T2, and extending in the horizontal direction to create what is called a T3 interface (Fig. 1). Additionally, higher order vertices called rosettes occur when five or more cells meet at a common vertex. Simulated T2 events demonstrate that cell angle and not noise level in the image contributes to the incorrect detection of artifactual T1s in more acute angled cells …

Sensitivity Of Radical Sam Enzyme Mftc To Molecular Oxygen, Vishnu Govindarajan

Electronic Theses and Dissertations

MftC is a radical S-adenosyl L-methionine (SAM) enzyme that catalyzes the first step in the production of mycofactocin. It is a ribosomally synthesized post-translationally modified (RiPP) redox cofactor shown to be essential for the survival of bacteria in the Mycobacterium genus in the presence of cholesterol as a carbon source and for the sequestration of ethanol. MftC catalyzes the C – terminal decarboxylation of tyrosine and the subsequent cross-linking of tyrosine to the penultimate valine on the precursor peptide MftA. The product formed out of the reaction is processed into mycofactocin in downstream processes. The bacteria in the Mycobacterium tuberculosis …

Quantification Of Dynamic Epithelial Sheet Architecture In Botryllus Schlosseri Using 2-D & 3-D Image Analysis, Roopa Madhu

Electronic Theses and Dissertations

Epithelial tubules form critical structures in various body tissues; how- ever, since they are difficult to access experimentally, their architecture and dynamics are not well understood. Here we examine the dynamic remodeling of epithelial tubes in vivo using a novel and uniquely accessible model system: the extracorporeal vasculature of Botryllus schlosseri (sea squirt). In Botryllus, massive retraction of blood vessels can be triggered without loss of barrier function, through (i) disrupting collagen crosslinking in the basement membrane using β-aminopropionitrile (BAPN); or (ii) disrupting the integrin pathway through inhibition of focal adhesion kinase (FAK). We performed stereographic projections of 3-dimensional …

Gas Adsorption In Carbon Nanohorns: Equilibrium And Kinetics, Justin Matthew Petucci

Electronic Theses and Dissertations

A study of gas adsorption has been carried out with the focus of better understanding the relationships between the individual properties of the adsorbent/adsorbate (e.g. material structure, interactions, gas size and shape, etc.) and the overall adsorptive properties of the combined system (e.g. capacity, binding strength, equilibration time, etc.) as a function of thermodynamical variables. This is useful from the perspective of a comprehensive and fundamental understanding as well as for practical applications. The equilibrium regime of adsorption on carbon nanostructure materials (nanohorns, nanotubes, and graphite) is investigated using molecular statics (MS) and grand canonical monte carlo (GCMC) methods for …

2d Confinement Of Thermal Gradients In Metallic Non-Local Spin Valves, Rachel K. Bennet

Electronic Theses and Dissertations

Non-local spin valves (NLSVs) are a valuable tool in the growing field of spintronics due to their unique ability to separate charge current from pure spin current. Their potential applications as read heads for hard-disk drives, as well as use as logic gates and other spin sensors, makes detailed understanding of their behavior under a wide range of operating conditions very important.

In this dissertation, I present results of extreme thermal engineering of the supporting substrate of NLSVs, which has a dramatic impact on the background signal of the device as well as contributions from thermal spin effects such as …