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Full-Text Articles in Other Mathematics
Dna Self-Assembly Of Trapezohedral Graphs, Hytham Abdelkarim
Dna Self-Assembly Of Trapezohedral Graphs, Hytham Abdelkarim
Electronic Theses, Projects, and Dissertations
Self-assembly is the process of a collection of components combining to form an organized structure without external direction. DNA self-assembly uses multi-armed DNA molecules as the component building blocks. It is desirable to minimize the material used and to minimize genetic waste in the assembly process. We will be using graph theory as a tool to find optimal solutions to problems in DNA self-assembly. The goal of this research is to develop a method or algorithm that will produce optimal tile sets which will self-assemble into a target DNA complex. We will minimize the number of tile and bond-edge types …
A Mathematical Analysis Of The Game Of Santorini, Carson Clyde Geissler
A Mathematical Analysis Of The Game Of Santorini, Carson Clyde Geissler
Senior Independent Study Theses
Santorini is a two player combinatorial board game. Santorini bears resemblance to the graph theory game of Geography, a game of moving and deleting vertices on a graph. We explore Santorini with game theory, complexity theory, and artificial intelligence. We present David Lichtenstein’s proof that Geography is PSPACE-hard and adapt the proof for generalized forms of Santorini. Last, we discuss the development of an AI built for a software implementation of Santorini and present a number of improvements to that AI.
Phylogenetic Networks And Functions That Relate Them, Drew Scalzo
Phylogenetic Networks And Functions That Relate Them, Drew Scalzo
Williams Honors College, Honors Research Projects
Phylogenetic Networks are defined to be simple connected graphs with exactly n labeled nodes of degree one, called leaves, and where all other unlabeled nodes have a degree of at least three. These structures assist us with analyzing ancestral history, and its close relative - phylogenetic trees - garner the same visualization, but without the graph being forced to be connected. In this paper, we examine the various characteristics of Phylogenetic Networks and functions that take these networks as inputs, and convert them to more complex or simpler structures. Furthermore, we look at the nature of functions as they relate …