Other Environmental Sciences Commons^™

Leveraging Image Analysis To Compute 3d Plant Phenotypes Based On Voxel-Grid Plant Reconstruction, Sruti Das Choudhury, Srikanth Maturu, Ashok Samal, Vincent Stoerger, Tala Awada

School of Natural Resources: Faculty Publications

High throughput image-based plant phenotyping facilitates the extraction of morphological and biophysical traits of a large number of plants non-invasively in a relatively short time. It facilitates the computation of advanced phenotypes by considering the plant as a single object (holistic phenotypes) or its components, i.e., leaves and the stem (component phenotypes). The architectural complexity of plants increases over time due to variations in self-occlusions and phyllotaxy, i.e., arrangements of leaves around the stem. One of the central challenges to computing phenotypes from 2-dimensional (2D) single view images of plants, especially at the advanced vegetative stage in presence of self-occluding …

Food System Resilience In Nigeria: Farmers Perspective, Azariah Lawal

School of Natural Resources: Dissertations, Theses, and Student Research

Disturbances are inherent in every socio-ecological system (SES). However, the spate and scope of upheavals in contemporary SES has increased dramatically in recent years. Agricultural systems are perhaps the most impacted when disasters occur because different aspects of agricultural production are directly affected. The burgeoning farmers-Fulani herdsmen conflict in West Africa is a manifestation of these challenges. When faced with events like these, contemporary food systems are faced with two options: collapse or transform. It is essential to have resilient agricultural systems because these systems lie at the nexus of resolving emerging global issues.

Nigeria is an important country in …

Impacts Of Irrigated Agriculture On The Near Surface And Planetary Boundary Layer Atmosphere: Results From The Great Plains Irrigation Experiment (Grainex), Emilee Lachenmeier

School of Natural Resources: Dissertations, Theses, and Student Research

Modification of natural prairie grasslands into irrigated and rainfed agriculture in the Great Plains produced significant impacts on regional weather and climate including temperatures, precipitation, energy fluxes, and the planetary boundary layer (PBL) atmosphere. The Great Plains Irrigation Experiment (GRAINEX) during the 2018 growing season collected data over irrigated and non-irrigated crop fields to further understand these impacts. The data were collected during two intensive observation periods (IOPs) in early June (IOP 1: 30 May – 13 June of 2018) and late July (IOP 2: 16 July – 30 July of 2018). The data analyzed include latent (LE) and sensible …

Remediating Contaminated Groundwater With An Aerated, Direct-Push, Oxidant Delivery System, James Reece, Mark Christenson, Ann Kambhu, Yusong Li, Clifford Harris, Steve D. Comfort

School of Natural Resources: Faculty Publications

One of the biggest challenges to treating contaminated aquifers with chemical oxidants is achieving uniform coverage of the target zone. In an effort to maximize coverage, we report the design and installation of a novel aerated, slow-release oxidant delivery system that can be installed by direct-push equipment. By continuously bubbling air beneath a slow-release oxidant in situ, an airlift pump is created that causes water and oxidant to be dispersed from the top of the outer screen and drawn in at the bottom. This continuous circulation pattern around each drive point greatly facilitates the spreading of the oxidant as it …

Harmful Algal Blooms Threaten The Health Of Peri-Urban Fisher Communities: A Case Study In Kisumu Bay, Lake Victoria, Kenya, Amber Roegner, Lewis Sitoki, Chelsea Weirich, Jessica Corman, Dickson Owage, Moses Umami, Ephraim Odada, Jared Miruka, Zachary Ogari, Woutrina Smith, Eliska Rejmankova, Todd R. Miller

School of Natural Resources: Faculty Publications

Available guidance to mitigate health risks from exposure to freshwater harmful algal blooms (HABs) is largely derived from temperate ecosystems. Yet in tropical ecosystems, HABs can occur year-round, and resource-dependent populations face multiple routes of exposure to toxic components. Along Winam Gulf, Lake Victoria, Kenya, fisher communities rely on lake water contaminated with microcystins (MCs) from HABs. In these peri-urban communities near Kisumu, we tested hypotheses that MCs exceed exposure guidelines across seasons, and persistent HABs present a chronic risk to fisher communities through ingestion with minimal water treatment and frequent, direct contact. We tested source waters at eleven communities …

Population Demographics, Distribution, And Environmental History Of Asian Carp In A Great Plains River, Jake Werner

School of Natural Resources: Dissertations, Theses, and Student Research

Silver Carp Hypophthalmichthys molitrix, Bighead Carp H. nobilis, and Black Carp Mylopharyngodon piceus, collectively known as Asian carp, are a group of invasive fishes in the U.S.A. that have garnered much attention over the last couple decades. Most research devoted to this group of fishes has been focused in the Mississippi River basin with little investigation in the Missouri River drainage, particularly in tributary systems. The Kansas River is a major tributary to the Missouri River that has multiple anthropogenic barriers creating varying levels of connectivity within the Kansas River itself, and with the Missouri River. Information …

Corn And Soybean Response To Wastewater-Recycled Phosphorus Fertilizers, Shane Ylagan

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

The ability to recycle phosphorus (P) from wastewaters could provide a sustainable, continuous source of P that might also help protect surface water quality from P enrichment. The mineral struvite (MgNH4PO4·6H2O) is an understudied material that can be created from Pcontaining wastewater and has been shown to have agricultural fertilizer value. The objective of this study was to evaluate the effects of electrochemically precipitated struvite (ECST), chemically precipitated struvite (Crystal Green; CG), diammonium phosphate (DAP), monoammonium phosphate (MAP), rock phosphate (RP), and triple super phosphate (TSP) on corn (Zea mays) and soybean (Glycine max) response in a 79-day greenhouse pot …

Linking Mosquito Surveillance To Dengue Fever Through Bayesian Mechanistic Modeling, Clinton B. Leach, Jennifer A. Hoeting, Kim M. Pepin, Alvaro E. Eiras, Mevin B. Hooten, Colleen T. Webb

United States Department of Agriculture Wildlife Services: Staff Publications

Our ability to effectively prevent the transmission of the dengue virus through targeted control of its vector, Aedes aegypti, depends critically on our understanding of the link between mosquito abundance and human disease risk. Mosquito and clinical surveillance data are widely collected, but linking them requires a modeling framework that accounts for the complex non-linear mechanisms involved in transmission. Most critical are the bottleneck in transmission imposed by mosquito lifespan relative to the virus’ extrinsic incubation period, and the dynamics of human immunity. We developed a differential equation model of dengue transmission and embedded it in a Bayesian hierarchical …

Flowers Are Essential To Maintain High Beetle Diversity (Coleoptera) In A Neotropical Rainforest Canopy, Susan Kirmse, Caroline S. Chaboo

University of Nebraska State Museum: Staff and Affiliates, Publications

Many hypotheses have been proposed to explain the megadiversity of angiosperms and insects. Flowers and their pollinators represent the most common terrestrial mutualistic interaction today and this is thought to have driven the evolution of angiosperms and their visitors. Within the framework of that interaction, this paper develops and tests two new hypotheses: 1) megadiversity of canopy beetles in tropical rainforests is largely based on flower resources, and 2) the majority of adult canopy beetles are adapted to visit flowers. To test hypothesis 1, the beetle fauna associated with 23 canopy tree species (13 families, 45 individuals) in a 1.4 …

Assessing The Impact Of Land Use And Land Cover Data Representation On Weather Forecast Quality: A Case Study In Central Mexico, Rezaul Mahmood

School of Natural Resources: Faculty Publications

In atmospheric modeling, an accurate representation of land cover is required because such information impacts water and energy budgets and, consequently, the performance of models in simulating regional climate. This study analyzes the impact of the land cover data on an operational weather forecasting system using the Weather Research and Forecasting (WRF) model for central Mexico, with the aim of improving the quality of the operative forecast. Two experiments were conducted using different land cover datasets: a United States Geological Survey (USGS) map and an updated North American Land Change Monitoring System (NALCMS) map. The experiments were conducted as a …

The Role Of Eolian-Fluvial Interactions And Dune Dams In Landscape Change, Late Pleistocene-Holocene, Mojave Desert, Usa, Mark R. Sweeney, Eric V. Mcdonald, Lucas P. Chabela, Paul R. Hanson

School of Natural Resources: Faculty Publications

The formation of the Kelso Dunes in the eastern Mojave Desert, California, was a landscape-changing event triggered by an increase in sediment supply that followed the incision of Afton Canyon by the Mojave River ca. 25 ka. Eastward migration of sand dunes occurred along a well-defined eolian trans­port corridor. Dunes temporarily blocked washes resulting in substantial aggradation of eolian and fluvial sediments. Stratigraphic exposures reveal numerous fining-up sequences with interbedded eolian sands that provide evidence of dune dams and subsequent aggradation. Luminescence ages reveal that dune blocking and aggradation correspond to a regional pulse of alluvial fan sedimentation that occurred …

Spotted Owls And Forest Fire: Comment, Gavin M. Jones, R. J. Gutiérrez, William M. Block, Peter C. Carlson, Emily J. Comfort, Samuel A. Cushman, Raymond J. Davis, Stephanie A. Eyes, Alan B. Franklin, Joseph L. Ganey, Shaula Hedwall, John J. Keane, Rodd Kelsey, Damon B, Lesmeister, Malcolm P. North, Susan L. Roberts, Jeremy T. Rockweit, Jamie S. Sanderlin, Sarah C. Sawyer, Ben Solvesky, Douglas J. Tempel, Ho Yi Wan, A. Leroy Westerling, Gary C. White, M. Zachariah Peery

United States Department of Agriculture Wildlife Services: Staff Publications

Western North American forest ecosystems are experiencing rapid changes in disturbance regimes because of climate change and land use legacies (Littell et al. 2018). In many of these forests, the accumulation of surface and ladder fuels from a century of fire suppression, coupled with a warming and drying climate, has led to increases in the number of large fires (Westerling 2016) and the proportion of areas burning at higher severity (Safford and Stevens 2017, Singleton et al. 2018). While the annual area burned by fire is still below historical levels (Taylor et al. 2016), some forest types in the west …

Toward The Standardization Of Mesoscale Meteorological Networks, Christopher Fiebrich, Kevin Brinson, Rezaul Mahmood, Stuart Foster, Megan Schargorodski, Nathan L. Edwards, Christopher A. Redmond, Jennie R. Atkins, Jeffrey Andresen, Xiaomao Lin

School of Natural Resources: Faculty Publications

Although they share many common qualities in design and operation, mesonetworks across the United States were established independently and organically over the last several decades. In numerous instances, the unique ways each network matured and developed new protocols has led to important lessons learned. These experiences have been shared in informal ways among various network operators over the years to promote reliable operation. As existing networks begin to introduce new sensors and technologies, and as new networks come online, there is a common need for guidance on best practices. This paper aims to formally provide recommendations to improve and harmonize …

Significance Statements Communicate Our Science More Widely, Rezaul Mahmood

School of Natural Resources: Faculty Publications

The American Meteorological Society (AMS) mission statement specifically calls for advancing ‘‘the atmospheric and related sciences . . . for the benefit of society.’’ To further the goal of communicating the importance of the science in our journals more widely, AMS is encouraging the inclusion in submitted papers of a ‘‘significance statement,’’ written in plain language and aimed at an educated layperson without formal training or education in the atmospheric and related sciences. As of 6 November 2020, Earth Interactions authors now have the option to include a significance statement with their submitted papers. A significance statement is an explanation …

Data Availability Principles And Practice, Rezaul Mahmood, Joseph A. Santanello, Xiaoyang Zhang

School of Natural Resources: Faculty Publications

Science requires evidence. Making data available lets other scientists confirm results, uncover errors, or find new insights. Moreover, gathering data can be expensive and time consuming. Since the same data can be used for a range of purposes, making data available can be an efficient use of limited research resources. Doing so can also improve traceability and, thus, accountability, when it comes to research findings. These reasons and more lie behind recent efforts to promote data availability. The American Meteorological Society (AMS) recently updated its data policy guidelines (https://www.ametsoc.org/ index.cfm/ams/publications/ethical-guidelines-and-ams-policies/data-policy-and-guidelines/) to require, among other things, that papers in its journals …

Loci Associated With Antibody Response In Feral Swine (Sus Scrofa) Infected With Brucella Suis, Courtney F. Pierce, Vienna R. Brown, Steven C. Olsen, Paola Boggiatto, Kerri Pedersen, Ryan S. Miller, Scott E. Speidel, Timothy J. Smyser

United States Department of Agriculture Wildlife Services: Staff Publications

Feral swine (Sus scrofa) are a destructive invasive species widespread throughout the United States that disrupt ecosystems, damage crops, and carry pathogens of concern for the health of domestic stock and humans including Brucella suis—the causative organism for swine brucellosis. In domestic swine, brucellosis results in reproductive failure due to abortions and infertility. Contact with infected feral swine poses spillover risks to domestic pigs as well as humans, companion animals, wildlife, and other livestock. Genetic factors influence the outcome of infectious diseases; therefore, genome wide association studies (GWAS) of differential immune responses among feral swine can provide …

A Review Of Avian Influenza A Virus Associations In Synanthropic Birds, Susan A. Shriner, J. Jeffrey Root

United States Department of Agriculture Wildlife Services: Staff Publications

Avian influenza A viruses (IAV) have received significant attention due to the threat they pose to human, livestock, and wildlife health. In this review, we focus on what is known about IAV dynamics in less common avian species that may play a role in trafficking IAVs to poultry operations. Specifically, we focus on synanthropic bird species. Synanthropic species, otherwise known as peridomestic, are species that are ecologically associated with humans and anthropogenically modified landscapes, such as agricultural and urban areas. Aquatic birds such as waterfowl and shorebirds are the species most commonly associated with avian IAVs, and are generally considered …

Resource Selection At Homesites By Wolves And Eastern Coyotes In A Canis Hybrid Zone, Teresa Oliveira, John F. Benson, Connor Thompson, Brent R. Patterson

School of Natural Resources: Faculty Publications

We modeled resource selection by wolves (Canis spp.), eastern coyotes (C. latrans), and admixed canids during the pup-rearing season at den and rendezvous sites (collectively, homesites) within a largely unprotected landscape proposed as the recovery zone for federally and provincially threatened eastern wolves (C. lycaon) in Ontario, Canada. Overall, canids selected wetlands, while avoiding secondary roads and open-structure rock-grass habitat patches. Packs with greater wolf ancestry selected wetlands and tertiary roads more strongly, while avoiding mixed conifer-hardwood forests. Contrary to our prediction, canids with greater coyote ancestry did not establish homesites closer to roads, which likely mitigated their risk of …

Developing A Model Of Graduate Teaching Assistant Teacher Efficacy: How Do High And Low Teacher Efficacy Teaching Assistants Compare?, Cody R. Smith, Cesar Delgado

School of Natural Resources: Faculty Publications

Graduate teaching assistants (TAs) are often responsible for teaching introductory courses to undergraduate science, technology, engineering, and mathematics students. The TAs are usually novices at teaching, and an important factor in their resilience and persistence in the face of inevitable challenges is self-efficacy. Little is known about what affects TA teacher efficacy or whether and how high- and low-efficacy TAs differ in their development as teachers. Bridging these gaps in the literature will inform best practices in developing and implementing professional development (PD) for TAs. Using a mixed-methods sequential exploratory research design, this study found differences in high- and low-efficacy …

A Profile Shape Correction To Reduce The Vertical Sensitivity Of Cosmic-Ray Neutron Sensing Of Soil Moisture, Lena M. Scheiffele, Gabriele Baroni, Trenton E. Franz, Jannis Jakobi, Sascha E. Oswald

School of Natural Resources: Faculty Publications

n recent years, cosmic-ray neutron sensing (CRNS) has shown a large potential among proximal sensing techniques to monitor soil moisture noninvasively, with high frequency and a large support volume (radius up to 240 m and sensing depth up to 80 cm). This signal is, however, more sensitive to closer distances and shallower depths. Inherently, CRNS-derived soil moisture is a spatially weighted value, different from an average soil moisture as retrieved by a sensor network. In this study, we systematically test a new profile shape correction on CRNS-derived soil moisture, based on additional soil moisture profile measurements and vertical unweighting, which …

Tools, Techniques And Teamwork: Transferring New Technologies For Wildlife Management, Conservation And Economic Development, John Eisemann, Gail Keirn

United States Department of Agriculture Wildlife Services: Staff Publications

Did you ever wonder who invented radio telemetry? Or breakaway snares? What about the bird repellent methyl anthranilate or the livestock protection collar? These and many other tools used in wildlife damage management resulted from creative thinking by biologists, technicians, researchers and managers working to solve complex wildlife issues. Over the past 90 years, these “aha moments” within the U.S. Department of Agriculture’s Wildlife Services program have ranged from developing novel scare devices, traps and vaccines to exploiting an animal’s visual capabilities to stop unwanted behaviors. Once discovered, these unique ideas may lead to practical, feasible and cost-effective wildlife damage …

Droughtscape, Fall 2020, National Drought Mitigation Center

DroughtScape: Quarterly Newsletter of the National Drought Mitigation Center (2007–2023)

DroughtScape, Fall 2020

Instability Of Glucocorticoid Metabolites In Coyote Scats: Implications For Field Sampling, Erika T. Stevenson, Eric M. Gese, Lorin A. Neuman-Lee, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Studying physiologic stress responses can assist in understanding the welfare of animals. One method of measuring the physiologic stress response is evaluating concentrations of glucocorticoid metabolites in feces. Previously, using an adrenocorticotropic hormone challenge, we found fecal glucocorticoid metabolite levels were a reliable indicator of physiologic stress response in coyotes (Canis latrans). We determine whether glucocorticoid metabolite concentrations remain stable when collecting feces over a 2-week period, a timeframe commonly used in scat surveys for wild canids. We collected feces from 6 captive coyotes maintained at the U.S. Department of Agriculture, Wildlife Services, National Wildlife Research Center, Predator …

Effects Of Riparian Deforestation On Benthic Invertebrate Community And Leaf Processing In Atlantic Forest Streams, Monalisa Silva-Araujo, Eduardo F. Silva-Junior, Vinicius Neres-Lima, Rafael Feijo-Lima, Flavia Tromboni, Christine Lourenco-Amorim, Steven A. Thomas, Timothy P. Moulton

School of Natural Resources: Faculty Publications

Riparian deforestation may strongly affect stream functioning, with consequences for biodiversity and ecosystem services. These effects can be assessed using bioindicators relating to biotic community structure and ecosystem functioning. We evaluated the effects of riparian deforestation on 1. measures of community structure using aquatic benthic invertebrates, and 2. an aspect of ecosystem functioning, aquatic leaf processing. We selected sites along gradients of riparian land use in four Atlantic rainforest streams and measured physical and chemical properties for their association with riparian deforestation. We sampled benthic invertebrates and calculated metrics of community structure at each site. We measured rates of leaf …

Dynamic Scaling Of The Generalized Complementary Relationship (Gcr) Improves Long-Term Tendency Estimates In Land Evaporation, Jozsef Szilagyi, Richard Crago, Ning Ma

School of Natural Resources: Faculty Publications

Most large-scale evapotranspiration (ET) estimation methods require detailed information of land use, land cover, and/or soil type on top of various atmospheric measurements. The complementary relationship of evaporation (CR) takes advantage of the inherent dynamic feedback mechanisms found in the soil−vegetation−atmosphere interface for its estimation of ET rates without the need of such biogeophysical data. ET estimates over the conterminous United States by a new, globally calibrated, static scaling (GCR-stat) of the generalized complementary relationship (GCR) of evaporation were compared to similar estimates of an existing, calibration-free version (GCR-dyn) of the GCR that employs a temporally varying dynamic scaling. Simplified …

Assessment Of Switchgrass-Based Bioenergy Supply Using Gis-Based Fuzzy Logic And Network Optimization In Missouri (U.S.A.), Gia Nguyen, Erik Lyttek, Pankaj Lal, Taylor Wieczerak, Pralhad Burli

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Bioenergy has been globally recognized as one of the sustainable alternatives to fossil fuels. An assured supply of biomass feedstocks is a crucial bottleneck for the bioenergy industry emanating from uncertainties in land-use changes and future prices. Analytical approaches deriving from geographical information systems (GIS)-based analysis, mathematical modeling, optimization analyses, and empirical techniques have been widely used to evaluate the potential for bioenergy feedstock. In this study, we propose a three-phase methodology integrating fuzzy logic, network optimization, and ecosystem services assessment to estimate potential bioenergy supply. The fuzzy logic analysis uses multiple spatial criteria to identify suitable biomass cultivating regions. …

Resilience Characteristics Of The Urban Agriculture System In Lansing, Michigan: Importance Of Support Actors In Local Food Systems, Caitlin K. Kirby, Lissy Goralnik, Jennifer Hodbod, Zach Piso, Julie C. Libarkin

School of Natural Resources: Faculty Publications

Urban agriculture is a growing movement in cities across the United States, including the post-industrial Midwest. Maintaining a resilient local food system is a challenge given the environmental, resource, and institutional barriers facing urban farmers. In this descriptive correlational study, we take an in-depth look at the demographics, farm characteristics, motivations, barriers, and resilience indicators of individuals in the urban agriculture system in Lansing, Michigan, a city of the US Midwest with a growing urban agriculture system. Survey responses (n = 92) revealed that support actors, community gardeners, and farmers have descriptive differences in their motivations, with support actors (e.g. …

Vampire Bats: Preparing For Range Expansion Into The U.S., Michael J. Bodenchuk, David L. Bergman

United States Department of Agriculture Wildlife Services: Staff Publications

The common vampire bat apparently is expanding its range northwards in Mexico and seems poised to enter the southern United States. Climate models predict suitable habitat in the U.S. in south Texas and parts of southern Arizona. While vampire bats’ northward range expansion is not unexpected, the fact that this species brings a strain of rabies that impacts livestock and people warrants a strategic response. Annual economic damages from bats are estimated between $7M and $9M, largely associated with deaths of livestock from rabies. To prepare for the emerging rabies issue, USDA Wildlife Services programs in Texas and Arizona have …

Growing Season Air Mass Equivalent Temperature (TE) In The East Central Usa, Dolly Na-Yemeh, Rezaul Mahmood, Gregory Goodrich, Keri Younger, Kevin Cary, Joshua D. Durkee

School of Natural Resources: Faculty Publications

Equivalent temperature (T_E), which incorporates both dry (surface air temperature, T) and moist heat content associated with atmospheric moisture, is a better indicator of overall atmospheric heat content compared to T alone. This paper investigates the impacts of different types of air masses on T_E during the growing season (April–September). The study used data from the Kentucky Mesonet for this purpose. The growing season was divided into early (April–May), mid (June–July), and late (August–September). Analysis suggests that T_E for moist tropical (MT) air mass was as high as 61 and 81 °C for the early and …

Foliar Application Of Low Concentrations Of Titanium Dioxide And Zinc Oxide Nanoparticles To The Common Sunflower Under Field Conditions, Marek Kolenčík, Dávid Ernst, Martin Urík, Ľuba Ďurišová, Marek Bujdoš, Martin Šebesta, Edmund Dobročka, Samuel Kšiňan, Ramakanth Illa, Qian Yu, Huan Feng, Ivan Černý, Veronika Holišová, Gabriela Kratošová

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Nano-fertilisers have only recently been introduced to intensify plant production, and there still remains inadequate scientific knowledge on their plant-related effects. This paper therefore compares the effects of two nano-fertilisers on common sunflower production under field conditions. The benefits arising from the foliar application of micronutrient-based zinc oxide fertiliser were compared with those from the titanium dioxide plant-growth enhancer. Both the zinc oxide (ZnO) and titanium dioxide (TiO₂) were delivered by foliar application in nano-size at a concentration of 2.6 mg·L⁻¹. The foliar-applied nanoparticles (NPs) had good crystallinity and a mean size distribution under 30 nm. …