Other Environmental Sciences Commons^™

Coastalimagelib: An Open- Source Python Package For Creating Common Coastal Image Products, Maile P. Mccann, Dylan L. Anderson, Christopher R. Sherwood, Brittany Bruder, A. Spicer Bak, Katherine L. Brodie

United States Geological Survey: Staff Publications

CoastalImageLib is a Python library that produces common coastal image products intended for quantitative analysis of coastal environments. This library contains functions to georectify and merge multiple oblique camera views, produce statistical image products for a given set of images, and create subsampled pixel instruments for use in bathymetric inversion, surface current estimation, run-up calculations, and other quantitative analyses. This package intends to be an open-source broadly generalizable front end to future coastal imaging applications, ultimately expanding user accessibility to optical remote sensing of coastal environments. This package was developed and tested on data collected from the Argus Tower, a …

Transcriptome Signatures Of Wastewater Effluent Exposure In Larval Zebrafish Vary With Seasonal Mixture Composition In An Effluent-Dominated Stream, Emma B. Meade, Luke R. Iwanowicz, Nicklaus Neureuther, Gregory H. Lefevre, Dana W. Kolpin, Hui Zhi, Shannon M. Meppelink, Rachael F. Lane, Angela Schmoldt, Aurash Mohaimani, Olaf Mueller, Rebecca D. Klaper

United States Geological Survey: Staff Publications

Wastewater treatment plant (WWTP) effluent-dominated streams provide critical habitat for aquatic and terrestrial organisms but also continually expose them to complex mixtures of pharmaceuticals that can potentially impair growth, behavior, and reproduction. Currently, few biomarkers are available that relate to pharmaceutical-specific mechanisms of action. In the experiment reported in this paper, zebrafish (Danio rerio) embryos at two developmental stages were exposed to water samples from three sampling sites (0.1 km upstream of the outfall, at the effluent outfall, and 0.1 km below the outfall) during base-flow conditions from two months (January and May) of a temperate-region effluent-dominated stream …

Sinistral Shear During Middle Jurassic Emplacement Of The Matancilla Plutonic Complex In Northern Chile (25.4◦ S) As Evidence Of Oblique Plate Convergence During The Early Andean Orogeny, S. P. Mavor, J. S. Singleton, G. Heuser, R. Gomila, N. M. Seymour, S. Williams, G. Arancibia

United States Geological Survey: Staff Publications

Arc magmatism in a continental subduction zone facilitates rheological weakening of the rigid upper plate, and can accommodate the partitioned trench-parallel component of oblique subduction into an intra-arc shear zone. We document a shear zone at latitude 25.4^◦ S near Taltal, Chile that was associated with intrusion of the Matancilla Plutonic Complex at ~169 Ma to evaluate intra-arc deformation and possible tectonic plate configurations during this time period. Polyphase folding of Paleozoic metasedimentary rocks is overprinted by mylonitic fabrics that are most extensive in a zone up to 1.4 km wide in the thermal aureole of the granodioritic Matancilla …

Sinistral Shear During Middle Jurassic Emplacement Of The Matancilla Plutonic Complex In Northern Chile (25.4◦ S) As Evidence Of Oblique Plate Convergence During The Early Andean Orogeny, S.P. Mavor, J.S. Singleton, G. Heuser, R Gomila, N.M. Seymour, S. Williams, G. Arancibia

United States Geological Survey: Staff Publications

component of oblique subduction into an intra-arc shear zone. We document a shear zone at latitude 25.4^◦ S near Taltal, Chile that was associated with intrusion of the Matancilla Plutonic Complex at ~169 Ma to evaluate intra-arc deformation and possible tectonic plate configurations during this time period. Polyphase folding of Paleozoic metasedimentary rocks is overprinted by mylonitic fabrics that are most extensive in a zone up to 1.4 km wide in the thermal aureole of the granodioritic Matancilla pluton, where contact metamorphic andalusite porphyroblasts are synkinematic with fabric development. Mylonite in metasedimentary rocks is overprinted by a ~130 Ma …

Discovering Hidden Geothermal Signatures Using Non-Negative Matrix Factorization With Customized K-Means Clustering, V.V. Vesselinov, B. Ahmmed, M.K. Mudunuru, J.D. Pepin, E.R. Burns, D.L. Siler, S. Karra, R.S. Middleton

United States Geological Survey: Staff Publications

Discovery of hidden geothermal resources is challenging. It requires the mining of large datasets with diverse data attributes representing subsurface hydrogeological and geothermal conditions. The commonly used play fairway analysis approach typically incorporates subject-matter expertise to analyze regional data to estimate geothermal characteristics and favorability. We demonstrate an alternative approach based on machine learning (ML) to process a geothermal dataset from southwest New Mexico (SWNM). The study region includes low- and medium-temperature hydrothermal systems. Several of these systems are not well characterized because of insufficient existing data and limited past explorative work. This study discovers hidden patterns and relations in …

The Effects Of Estradiol-17Β On The Sex Reversal, Survival, And Growth Of Green Sunfish Lepomis Cyanellus, Chad N. Teal, Daniel J. Schill, Susan B. Fogelson, Colby M. Roberts, Kevin Fitzsimmons, Javan M. Bauder, William T. Stewart, Scott A. Bonar

United States Geological Survey: Staff Publications

The feminization of green sunfish Lepomis cyanellus could expand their utility as a game fish or aquacultured species by preventing overcrowding and precocious reproduction in stocked systems. Feminization of green sunfish could also help elucidate information on their sex determination system. We report the feminization of green sunfish cohorts via oral administration of estradiol-17β (E2) during early development. A low-dose (100 E2 mg per kg of diet) and a high-dose (150 E2 mg per kg of diet) experimental E2 treatment were fed to juvenile green sunfish from 30 to 90 days post-hatch. Fish were subsequently evaluated for any treatment effect …

Climate Change Alters Aging Patterns Of Reservoir Aquatic Habitats, Leandro E. Miranda, Nicky M. Faucheux

United States Geological Survey: Staff Publications

Two slow-moving developments are threatening reservoir aquatic habitats globally: aging and climate change. These events are projected to transform reservoir aquatic habitats in various and often unpredictable ways. Aging affects in-lake habitats directly, whereas climate change affects both in-lake and off-lake conditions. Climate change is expected to accelerate and, in some instances, possibly decelerate aging. Aging can be indexed as functional age, an index that signals the position of a reservoir along its lifespan relying on inlake descriptors of aquatic habitat. Using existing habitat datasets and climate projections, we developed semi-quantitative predictions about the effect of climate change on reservoir …

Sediment Source Fingerprinting As An Aid To Large-Scale Landscape Conservation And Restoration: A Review For The Mississippi River Basin, Zhen Xu, Patrick Belmont, Janice Brahney, Allen C. Gellis

United States Geological Survey: Staff Publications

Reliable quantitative information on sediment sources to rivers is critical to mitigate contamination and target conservation and restoration actions. However, for large-scale river basins, determination of the relative importance of sediment sources is complicated by spatiotemporal variability in erosional processes and sediment sources, heterogeneity in sediment transport and deposition, and a paucity of sediment monitoring data. Sediment source fingerprinting is an increasingly adopted field-based technique that identifies the nature and relative source contribution of sediment transported in waterways. Notably, sediment source fingerprinting provides information that is independent of other field, modeling, or remotely sensed techniques. However, the diversity in sampling, …

Vermicompost Versus Traditional Compost Amendments Leads To Different Soil Health Outcomes In A Mediterranean Vineyard, Elizabeth L. Luck

Master of Science in Environmental Sciences and Management Projects

Compost application has become a common practice in vineyard management to increase soil and crop health, however, the environmental externalities such as greenhouse gas emissions (GHG) from cropping systems that utilize organic fertilizers, such as compost, is uncertain. Vermicompost, which is compost created through the digestion of organic matter by earthworms, and its related ‘extract’ are commonly thought to provide more benefits for soil and crop health compared to standard compost. However, organic fertilizers such as vermicompost, vermicompost extract, and compost have not been compared in their effects on soil health in Mediterranean vineyards. In this two-year study, I assessed …

The Interaction Of Different Primary Producers And Physical And Chemical Dynamics Of An Urban Shallow Lake, Majid Sahin

Dissertations, Theses, and Capstone Projects

An artificial urban shallow lake, Prospect Park Lake (PPL), is situated on a terminal moraine in Brooklyn New York, and supplied with municipal water treated with ortho-phosphates. The constant input of the phosphate nutrient is the primary source of eutrophication in the lake. The numerous pools along the water course houses various aquatic phototrophs, which influence the water quality and the state of the system, driving conditions into favoring the survival of their species. In the first half of the dissertation, the focus of the project is on analyzing how the different primary producers in different regions of PPL affect …

Seasonality Of Precipitation In The Southwestern United States During The Late Pleistocene Inferred From Stable Isotopes In Herbivore Tooth Enamel, Matthew J. Kohn, Kathleen B. Springer, Jeffrey S. Pigati, Linda M. Reynard, Amanda E. Drewicz, Justin Crevier, Eric Scott

United States Geological Survey: Staff Publications

The late Pleistocene was a climatically dynamic period, with abrupt shifts between cool-wet and warmdry conditions. Increased effective precipitation supported large pluvial lakes and long-lived spring ecosystems in valleys and basins throughout the western and southwestern U.S., but the source and seasonality of the increased precipitation are debated. Increases in the proportions of C₄/(C₄+ C₃) grasses in the diets of large grazers have been ascribed both to increases in summer precipitation and lower atmospheric CO₂ levels. Here we present stable carbon and oxygen isotope data from tooth enamel of late Pleistocene herbivores recovered …

Collateral Damage: Anticoagulant Rodenticides Pose Threats To California Condors, Garth Herring, Collin A. Eagles-Smith, Rachel Wolstenholme, Alacia Welch, Chris West, Barnett A. Rattner

United States Geological Survey: Staff Publications

Anticoagulant rodenticides (ARs) are widespread environmental contaminants that pose risks to scavenging birds because they routinely occur within their prey and can cause secondary poisoning. However, little is known about AR exposure in one of the rarest avian scavengers in the world, the California condor (Gymnogyps californianus). We assessed AR exposure in California condors and surrogate turkey vultures (Cathartes aura) to gauge potential hazard to a proposed future condor flock by determining how application rate and environmental factors influence exposure. Additionally, we examined whether ARs might be correlated with prolonged blood clotting time and potential mortality …

Limited Rigor In Studies Of Raptor Mortality And Mitigation At Wind Power Facilities, Tara J. Conkling, Christopher J.W. Mcclure, Sandra Cuadros, Scott R. Loss, Todd E. Katzner

United States Geological Survey: Staff Publications

Wind power is an expanding source of renewable energy. However, there are ecological challenges related to wind energy generation, including collisions of wildlife with turbines. Lack of rigor, and variation in study design, together limit efforts to understand the broad-scale effects of wind power infrastructure on wildlife populations. It is not clear, however, whether these types of limitations apply to groups of birds such as raptors that are particularly vulnerable to negative effects of wind energy. We reviewed 672 peer-reviewed publications, unpublished reports, and citations from 321 wind facilities in 12 countries to evaluate methods used to monitor and mitigate …

Understanding Conservation Specialists’ Role In The Adoption Of Precision Agriculture In Nebraska, Morgan L. Register

School of Natural Resources: Dissertations, Theses, and Student Research

There is a complex issue by the need for strategic development of agricultural lands to ensure we can feed a growing world, while simultaneously reducing impacts on our natural resources such as water pollution from runoff, soil degradation, and habitat fragmentation. To address these growing concerns, researchers are looking for ways to optimize both agricultural production and natural resource conservation. Precision conservation was developed to ensure sustainable ecosystems for future generations. Our research evaluates conservation specialists’ ability to clearly articulate how precision conservation can help agricultural producers feed a growing world while simultaneously reducing impacts on our natural resources, I …

Secondary Science Teachers Use Of Models In Teaching And Learning About Earth’S Climate, Kimberly Carroll Steward

School of Natural Resources: Dissertations, Theses, and Student Research

Global climate change (GCC) presents unprecedented global concerns, notably food supply limitations, unsustainable use of natural resources, and widespread environmental degradation. The International Panel on Climate Change (IPCC) reports a 0.85 °C increase in global average temperatures between 1880 and 2018 and a 50% increase in global carbon dioxide emissions since 1990 (Stocker et al., 2018). As a result of the urgency of the situation, there is a strong emphasis on empowering citizens through outreach and education. There is a need to adequately prepare the next generation of scientists, politicians, business leaders, and other people; it is crucial to foster …

Towards Usable Environmental Information: A Case Study With The Santee Sioux Nation, Alexis Chavez

School of Natural Resources: Dissertations, Theses, and Student Research

Across the United States (U.S.), Indigenous peoples have developed and implemented adaptation plans to improve their resilience to climate and weather disturbances. An essential component of these plans is to use environmental information effectively. Institutions like universities and government agencies usually provide this information, and its usability depends on the information’s quality and the relationships that establish its accessibility and validity. However, many studies have shown that much of this information is not usable for its intended users. Additionally, there has been little research into the issues that can affect Indigenous peoples’ usage of environmental information in the U.S. Therefore, …

Analysis Of Soil Change Across Nebraska, Trinity Baker

School of Natural Resources: Dissertations, Theses, and Student Research

The world’s population is growing and an increasing populace requires more resources. These requirements place increasing pressure on the environment and the soil. Soils serve many important functions throughout the world. These functions range from offering a media for food production, providing a sink for organic carbon, nutrient cycling, and improving water quality. It is important to focus on the human impact on soils and their change over time.

For my research I examined how soils across Nebraska have changed over a time period of roughly 65 years. I sampled and analyzed 39 pedons from four Major Land Resource Areas …

Coupling Dendrochronology And Remote Sensing Techniques To Assess The Biophysical Traits Of Juniperus Virginiana And Pinus Ponderosa Within Grassland Communities In The Semi-Arid Grasslands Of The Nebraska Sandhills, Reece Allen

School of Natural Resources: Dissertations, Theses, and Student Research

Woody species encroachment is occurring within the sandhills region in Nebraska, primarily driven by Juniperus virginiana and Pinus ponderosa, altering ecosystems and the services they provide. Effective, low cost, and cross-scale monitoring of woody species growth and performance is necessary for integrated grassland and forest management in the face of climate variability and change. In this study, we sought to establish a relationship between remote sensing-derived vegetation indices (VIs) and dendrochronological (raw and standardized tree ring width) measurements to assess the performance of encroaching woody J. virginiana and P. ponderosa located within the Nebraska National Forest in the sandhills. …

Spatial Stream Modeling Of Louisiana Waterthrush (Parkesia Motacilla) Foraging Substrate And Aquatic Prey In A Watershed Undergoing Shale Gas Development, Mack W. Frantz, Petra B. Wood, Steven C. Latta

United States Geological Survey: Staff Publications

We demonstrate the use of spatial stream network models (SSNMs) to explore relationships between a semiaquatic bioindicator songbird, Louisiana Waterthrush (Parkesia motacilla), and stream monitoring and benthic macroinvertebrate data in an area undergoing shale gas development. SSNMs allowed us to account for spatial autocorrelation inherent to these environmental data types and stream properties that traditional modeling approaches cannot capture to elucidate factors that affect waterthrush foraging locations. We monitored waterthrush along 58.1 km of 1st- and 2nd-order headwater stream tributaries (n = 14) in northwestern West Virginia over a two year period (2013–2014), sampled benthic macroinvertebrates in waterthrush …

Science Of The Total Environment, Benjamin Linhoff

United States Geological Survey: Staff Publications

Recently, the subsoils of ephemeral stream(arroyos) floodplains in the northern Chihuahuan Desert were discovered to contain large naturally occurring NO₃⁻ reservoirs (floodplain:~38,000 kg NO₃-N/ha; background:~60 kg NO₃-N/ha). These reservoirs may be mobilized through land use change or natural stream channel migration which makes differentiating between anthropogenic and natural groundwaterNO₃⁻sources challenging. In this study, the fate and sources of NO₃⁻ were investigated in an area with multiple NO₃⁻ sources such as accidental sewer line releases and sewage lagoons aswell as natural reservoirs of subsoil NO₃⁻. …

Droughtscape, Summer 2022, National Drought Mitigation Center

DroughtScape: Quarterly Newsletter of the National Drought Mitigation Center (2007–2023)

DroughtScape, Summer 2022

Population Genetics Reveals Bidirectional Fish Movement Across The Continental Divide Via An Interbasin Water Transfer, Audrey C. Harris, Sara J. Oyler-Mccance, Jennifer A. Fike, Matthew P. Fairchild, Christopher M. Kennedy, Harry J. Crockett, Dana L. Winkelman, Yoichiro Kanno

United States Geological Survey: Staff Publications

Interbasin water transfers are becoming an increasingly common tool to satisfy municipal and agricultural water demand, but their impacts on movement and gene flow of aquatic organisms are poorly understood. The Grand Ditch is an interbasin water transfer that diverts water from tributaries of the upper Colorado River on the west side of the Continental Divide to the upper Cache la Poudre River on the east side of the Continental Divide. We used single nucleotide polymorphisms to characterize population genetic structure in cutthroat trout (Oncorhynchus clarkii) and determine if fish utilize the Grand Ditch as a movement corridor. …

The Natural History And Ecology Of Melanism In Red Wolf And Coyote Populations Of The Southeastern United States – Evidence For Gloger’S Rule, Joseph W. Hinton, Kyla M. West, Daniel J. Sullivan, Jacqueline L. Frair, Michael J. Chamberlain

United States Environmental Protection Agency: Publications

Background: Gloger’s rule postulates that animals should be darker colored in warm and humid regions where dense vegetation and dark environments are common. Although rare in Canis populations, melanism in wolves is more common in North America than other regions globally and is believed to follow Gloger’s rule. In the temperate forests of the southeastern United States, historical records of red wolf (Canis rufus) and coyote (Canis latrans) populations document a consistent presence of melanism. Today, the melanistic phenotype is extinct in red wolves while occurring in coyotes and red wolf-coyote hybrids who occupy the …

Foraging Habitat Selection Of Shrubland Bird Community In Tropical Dry Forest, Anant Deshwal, Steven L. Stephenson, Pooja Panwar, Brett A. Degregorio, Ragupathy Kannan, John D. Willson

United States Geological Survey: Staff Publications

Habitat loss due to increasing anthropogenic disturbance is the major driver for bird population declines across the globe. Within the Eastern Ghats of India, shrubland bird communities are threatened by shrinking of suitable habitats due to increased anthropogenic disturbance and climate change. The development of an effective habitat management strategy is hampered by the absence of data for this bird community. To address this knowledge gap, we examined foraging sites for 14 shrubland bird species, including three declining species, in three study areas representing the shrubland type of forest community in the Eastern Ghats. We recorded microhabitat features within an …

Speciation With Gene Flow In A Narrow Endemic West Virginia Cave Salamander (Gyrinophilus Subterraneus), Evan H. Campbell Grant, Kevin P. Mulder, Adrianne B. Brand, Douglas B. Chambers, Addison H. Wynn, Grace Capshaw, Matthew L. Niemiller, John G. Phillips, Jeremy F. Jacobs, Shawn R. Kuchta, Rayna C. Bell

United States Geological Survey: Staff Publications

Due to their limited geographic distributions and specialized ecologies, cave species are often highly endemic and can be especially vulnerable to habitat degradation within and surrounding the cave systems they inhabit. We investigated the evolutionary history of the West Virginia Spring Salamander (Gyrinophilus subterraneus), estimated the population trend from historic and current survey data, and assessed the current potential for water quality threats to the cave habitat. Our genomic data (mtDNA sequence and ddRADseq-derived SNPs) reveal two, distinct evolutionary lineages within General Davis Cave corresponding to G. subterraneus and its widely distributed sister species, Gyrinophilus porphyriticus, that …

Toxicological Responses To Sublethal Anticoagulant Rodenticide Exposure In Free‑Flying Hawks, Nimish B. Vyas, Barnett A. Rattner, J. Michael Lockhart, Craig S. Hulse, Clifford P. Rice, Frank Kuncir, Kevin Kritz

United States Geological Survey: Staff Publications

An important component of assessing the hazards of anticoagulant rodenticides to non-target wildlife is observations in exposed free-ranging individuals. The objective of this study was to determine whether environmentally realistic, sublethal first-generation anticoagulant rodenticide (FGAR) exposures via prey can result in direct or indirect adverse effects to free-flying raptors. We offered black-tailed prairie dogs (Cynomys ludovicianus) that had fed on Rozol® Prairie Dog Bait (Rozol, 0.005% active ingredient chlorophacinone, CPN) to six wild-caught red-tailed hawks (RTHA, Buteo jamaicensis), and also offered black-tailed prairie dogs that were not exposed to Rozol to another two wild-caught RTHAs for 7 …

Within‑Marsh And Landscape Features Structure Ribbed Mussel Distribution In Georgia, Usa, Marshes, William K. Annis, Elizabeth A. Hunter, John M. Carroll

United States Geological Survey: Staff Publications

Ribbed mussels, Geukensia demissa, are marsh fauna that are used in coastal management and restoration due to the ecosystem services they provide. Ribbed mussel restoration efforts may be improved with a greater understanding of the environmental drivers of ribbed mussel distribution at multiple spatial scales to predict areas where restoration could be successful. This study sought to estimate the effects of within-marsh (4 m) and landscape (500 m) factors on ribbed mussel distribution. Ribbed mussel densities were surveyed at 11 sites along the coast of Georgia, USA, and overlaid with spatial data for within-marsh factors (elevation, distance to marsh …

Influences Of Seasonality And Habitat Quality On Great Lakes Coastal Wetland Fish Community Composition And Diets, Sara N. Diller, Anna M. Harrison, Kurt P. Kowalski, Valerie J. Brady, Jan J. H. Ciborowski, Matthew J. Cooper, Joshua D. Dumke, Joseph P. Gathman, Carl R. Ruetz Iii, Donald G. Uzarski, Douglas A. Wilcox, Jeffrey S. Schaeffer

United States Geological Survey: Staff Publications

Great Lakes coastal wetlands (GLCW) have been severely degraded by anthropogenic activity over the last several decades despite their critical role in fish production. Many Great Lakes fish species use coastal wetland habitats for spawning, feeding, shelter, and nurseries throughout the year. The goal of our study was to compare GLCW fish community composition in the spring, summer, and fall months and investigate how water quality relates to fish diversity, the presence of functional groups, and juvenile fish diets. We summarized fish data collected from GLCW across the basin and used the coastal wetland monitoring program’s water quality-land use indicator …

A Critical Review Of Bioaccumulation And Biotransformation Of Organic Chemicals In Birds, Dave T. F. Kuo, Barnett A. Rattner, Sarah C. Marteinson, Robert Letcher, Kim J. Fernie, Gabriele Treu, Markus Deutsch, Mark S. Johnson, Sandrine Deglin, Michelle Embry

United States Geological Survey: Staff Publications

A literature review of bioaccumulation and biotransformation of organic chemicals in birds was undertaken, aiming to support scoping and prioritization of future research. The objectives were to characterize available bioaccumulation/ biotransformation data, identify knowledge gaps, determine how extant data can be used, and explore the strategy and steps forward. An intermediate approach balanced between expediency and rigor was taken given the vastness of the literature. Following a critical review of >500 peer-reviewed studies, >25,000 data entries and 2 million information bytes were compiled on >700 organic compounds for ~ 320 wild species and 60 domestic breeds of birds. These data …

Murphy Scale: A Locational Equivalent Intensity Scale For Hazard Events, Yi Victor Wang, Antonia Sebastian

Institute for ECHO Articles and Research

Empirical cross-hazard analysis and prediction of disaster vulnerability, resilience, and risk requires a common metric of hazard strengths across hazard types. In this paper, the authors propose an equivalent intensity scale for cross-hazard evaluation of hazard strengths of events for entire durations at locations. The proposed scale is called the Murphy Scale, after Professor Colleen Murphy. A systematic review and typology of hazard strength metrics is presented to facilitate the delineation of the defining dimensions of the proposed scale. An empirical methodology is introduced to derive equivalent intensities of hazard events on a Murphy Scale. Using historical data on …