Other Environmental Sciences Commons^™

Metabarcoding Assays For The Detection Of Freshwater Mussels (Unionida) With Environmental Dna, Katy E. Klymus, Catherine A. Richter, Nathan Thompson, Jo Ellen Hinck, Jess W. Jones

United States Geological Survey: Staff Publications

Freshwater mussels of the order Unionida are a widely distributed taxon that are important in maintaining freshwater ecosystems and are also highly imperiled throughout the world. Monitoring of mussel populations with environmental DNA (eDNA) is an attractive alternative to traditional methods because it is noninvasive and requires less labor and taxonomic knowledge from field personnel. We developed eDNA metabarcoding assays specific to freshwater mussels and tested them at six sites in the Clinch River, located in the southeastern United States. Our objective was to determine the utility of eDNA metabarcoding for future monitoring of mussel populations and restoration efforts in …

The Marine Terraces Of Santa Cruz Island, California: Implications For Glacial Isostatic Adjustment Models Of Last-Interglacial Sea-Level History, Daniel R. Muhs, R. Randall Schumann, Lindsey T. Groves, Kathleen R. Simmons, Christopher R. Florian

United States Geological Survey: Staff Publications

Glacial isostatic adjustment (GIA) models hypothesize that along coastal California, last interglacial (LIG, broadly from ~130 to ~115 ka) sea level could have been as high as +11 m to +13 m, relative to present, substantially higher than the commonly estimated elevation of +6 m. Areas with low uplift rates can test whether such models are valid. Marine terraces on Santa Cruz Island have previously been reported to occur at low (<10 m) elevations, but ages of many such localities are not known. Using lidar imagery as a base, marine terraces on Santa Cruz Island were newly mapped, elevations were measured, fossils were collected for U-series dating (corals), strontium isotope compositions and amino acid geochronology (mollusks), and paleozoogeography (all taxa). Sr isotope compositions of mollusks from the highest of three marine terraces give ages of ~2.5 Ma to 1.9 Ma, along with Pliocene ages, fromshells interpreted to be reworked. U-series ages of corals fromthewestern part of the island indicate that low-elevation terraces north of the Santa Cruz Island fault correlate to the LIG. Where corals are lacking, amino acid ratios and faunal aspects support terrace correlation to the LIG high stand of sea. Elevations of most terrace localities north of the east-west trending Santa Cruz Island fault, in both thewestern and eastern parts of the island, range from5.75mto 8mabove sea level, well belowthe modeled paleo-sealevel range. Subsidence is ruled out as a mechanism for explaining the lower-than-modeled elevations, because higher-elevation terraces are present alongmuch of the Santa Cruz Island coast north of the fault, indicating longterm tectonic uplift. The low elevations of the LIG terrace fragments are, however, consistent with a low rate of uplift derived from the higher, ~2.5–1.9 Ma terrace. A number of other localities on the Pacific Coast, also dated to the LIG, have marine terrace elevations below the modeled level. GIA models may have overestimated last interglacial sea level by a substantial amount and need to be revised if used for forecasts for future sea-level rise.

Modeling Vegetation Effects On Barrier Island Evolution, Eric W. Schoen

Theses and Dissertations

Barrier islands play a significant role in protecting coastlines and harboring coastal habitats. In an effort to study and better understand the evolution of barrier island systems, a cellular model capturing various meteorological and environmental processes is proposed. Erosion due to wind, gravity, and marine processes are coupled with plant population effects. We demonstrate the inhibition of plant cover on sediment mobility, island migration, and erosion in the presence of sea level rise.

Artisanal Mining Impacts In Urbanized Semi-Arid Environments: Lessons From Historic Arsenic Mining Near San Diego, California, James A. Wright

Theses

Anomalously elevated arsenic concentrations occur at an abandoned artisanal mine site in an open space recreational park in urban San Diego County, California. Although mining at the site ceased 100 years ago little to no remediation efforts took place leaving shafts, adits, waste piles and derelict infrastructure accessible by inquisitive hikers and adventurers frequenting Black Mountain Open Space Park. This study evaluates the geochemical mechanisms of As transport downgradient from the mine and examines the contribution of both climate and urbanization on the restriction of As mobility. Sediment As concentrations reach 2,320 mg/kg (483 times background crustal concentrations; n=73) along …

Evaluation Of A Low-Cost Uas And Phenocams For Measuring Grapevine Greenness, Timothy J. Hoheneder

Graduate Theses, Dissertations, and Problem Reports (ETD)

Unpersoned aerial systems (UAS) could provide winegrowers with the potential to monitor vineyard productivity with ultra-high-resolution imagery and low operational costs. This ability could prove particularly valuable in the challenging cool-climate viticultural areas of Appalachia. Especially in this mountainous region of increasingly variable microclimates, there could be of great value from an ability to use UAS-measured greenness to monitor wine grape phenology and predict harvest quality and quantity. In this study, I assess how UAS-measured greenness relates to three complementary measures of field-based: leaf angle measurements, phenocam measured greenness, and leaf spectral measurements of greenness. After correlating these field-based measures …

A Conceptual Model Evaluation Framework For Adaptive Governance And Adaptive Management In Large-Scale Restoration Programs, Chadwin Smith

School of Natural Resources: Dissertations, Theses, and Student Research

Adaptive management (AM) has become a kind of plastic phrase applied as a formulaic panacea for most major species recovery and ecosystem restoration efforts now underway across the United States. AM emerged as an application of the scientific method to resource management, closely tying management to science learning through experimental actions. The phrase “learning by doing” best captures the premise behind developing an experimental management approach that could be applied on the larger scale of a river system or ecosystem. In nearly five decades of application, however, examples of successful AM implementation at large scales are few and conflict remains …

Impacts Of Irrigated Agriculture On The Near Surface And Planetary Boundary Layer Atmosphere: Results From The Great Plains Irrigation Experiment (Grainex), Emilee Lachenmeier

School of Natural Resources: Dissertations, Theses, and Student Research

Modification of natural prairie grasslands into irrigated and rainfed agriculture in the Great Plains produced significant impacts on regional weather and climate including temperatures, precipitation, energy fluxes, and the planetary boundary layer (PBL) atmosphere. The Great Plains Irrigation Experiment (GRAINEX) during the 2018 growing season collected data over irrigated and non-irrigated crop fields to further understand these impacts. The data were collected during two intensive observation periods (IOPs) in early June (IOP 1: 30 May – 13 June of 2018) and late July (IOP 2: 16 July – 30 July of 2018). The data analyzed include latent (LE) and sensible …

Population Demographics, Distribution, And Environmental History Of Asian Carp In A Great Plains River, Jake Werner

School of Natural Resources: Dissertations, Theses, and Student Research

Silver Carp Hypophthalmichthys molitrix, Bighead Carp H. nobilis, and Black Carp Mylopharyngodon piceus, collectively known as Asian carp, are a group of invasive fishes in the U.S.A. that have garnered much attention over the last couple decades. Most research devoted to this group of fishes has been focused in the Mississippi River basin with little investigation in the Missouri River drainage, particularly in tributary systems. The Kansas River is a major tributary to the Missouri River that has multiple anthropogenic barriers creating varying levels of connectivity within the Kansas River itself, and with the Missouri River. Information …

Impacts Of Environmental Conditions On Fleas In Black-Tailed Prairie Dog Burrows, Julia E. Poje, Tonie Rocke, Michael D. Samuel

United States Geological Survey: Staff Publications

Sylvatic plague, caused by the bacterium Yersinia pestis and transmitted by fleas, occurs in prairie dogs of the western United States. Outbreaks can devastate prairie dog communities, often causing nearly 100% mortality. Three competent flea vectors, prairie dog specialists Oropsylla hirsuta and O. tuberculata, and generalist Pulex simulans, are found on prairie dogs and in their burrows. Fleas are affected by climate, which varies across the range of black-tailed prairie dogs (Cynomys ludovicianus), but these effects may be ameliorated somewhat due to the burrowing habits of prairie dogs. Our goal was to assess how temperature and precipitation …

Corn And Soybean Response To Wastewater-Recycled Phosphorus Fertilizers, Shane Ylagan

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

The ability to recycle phosphorus (P) from wastewaters could provide a sustainable, continuous source of P that might also help protect surface water quality from P enrichment. The mineral struvite (MgNH4PO4·6H2O) is an understudied material that can be created from Pcontaining wastewater and has been shown to have agricultural fertilizer value. The objective of this study was to evaluate the effects of electrochemically precipitated struvite (ECST), chemically precipitated struvite (Crystal Green; CG), diammonium phosphate (DAP), monoammonium phosphate (MAP), rock phosphate (RP), and triple super phosphate (TSP) on corn (Zea mays) and soybean (Glycine max) response in a 79-day greenhouse pot …

Characterizing El Niño-Southern Oscillation Effects On The Blue Nile Yield And The Nile River Basin Precipitation Using Empirical Mode Decomposition, Justin A. Le, Hesham El-Askary, Mohamed Allali, Eman Sayed, Hani Sweliem, Thomas C. Piechota, Daniele C. Struppa

Mathematics, Physics, and Computer Science Faculty Articles and Research

Using new mathematical and data-driven techniques, we propose new indices to measure and predict the strength of different El Niño events and how they affect regions like the Nile River Basin (NRB). Empirical Mode Decomposition (EMD), when applied to Southern Oscillation Index (SOI), yields three Intrinsic Mode Functions (IMF) tracking recognizable and physically significant non-stationary processes. The aim is to characterize underlying signals driving ENSO as reflected in SOI, and show that those signals also meaningfully affect other physical processes with scientific and predictive utility. In the end, signals are identified which have a strong statistical relationship with various physical …

The Role Of Eolian-Fluvial Interactions And Dune Dams In Landscape Change, Late Pleistocene-Holocene, Mojave Desert, Usa, Mark R. Sweeney, Eric V. Mcdonald, Lucas P. Chabela, Paul R. Hanson

School of Natural Resources: Faculty Publications

The formation of the Kelso Dunes in the eastern Mojave Desert, California, was a landscape-changing event triggered by an increase in sediment supply that followed the incision of Afton Canyon by the Mojave River ca. 25 ka. Eastward migration of sand dunes occurred along a well-defined eolian trans­port corridor. Dunes temporarily blocked washes resulting in substantial aggradation of eolian and fluvial sediments. Stratigraphic exposures reveal numerous fining-up sequences with interbedded eolian sands that provide evidence of dune dams and subsequent aggradation. Luminescence ages reveal that dune blocking and aggradation correspond to a regional pulse of alluvial fan sedimentation that occurred …

Implementation Of An Occupancy-Based Monitoring Protocol For A Widespread And Cryptic Species, The New England Cottontail (Sylvilagus Transitionalis), Colin P. Shea, Mitchell J. Eaton, Darryl I. Mackenzie

United States Geological Survey: Staff Publications

Context. Designing effective long-term monitoring strategies is essential for managing wildlife populations. Implementing a cost-effective, practical monitoring program is especially challenging for widespread but locally rare species. Early successional habitat preferred by the New England cottontail (NEC) has become increasingly rare and fragmented, resulting in substantial declines from their peak distribution in the mid-1900s. The introduction of a possible competitor species, the eastern cottontail (EC),may also have played a role. Uncertainty surrounding how these factors have contributed to NEC declines has complicated management and necessitated development of an appropriate monitoring framework to understand possible drivers of distribution and dynamics.

Aims. …

Droughtscape, Fall 2020, National Drought Mitigation Center

DroughtScape: Quarterly Newsletter of the National Drought Mitigation Center (2007–2023)

DroughtScape, Fall 2020

Repetitive Sampling And Control Threshold Improve 16s Rrna Gene Sequencing Results From Produced Waters Associated With Hydraulically Fractured Shale, Jenna L. Shelton, Elliott P. Barnhart, Leslie Ruppert, Aaron M. Jubb, Madalyn S. Blondes, Christina A. Devera

United States Geological Survey: Staff Publications

Sequencing microbial DNA from deep subsurface environments is complicated by a number of issues ranging from contamination to non-reproducible results. Many samples obtained from these environments – which are of great interest due to the potential to stimulate microbial methane generation – contain low biomass. Therefore, samples from these environments are difficult to study as sequencing results can be easily impacted by contamination. In this case, the low amount of sample biomass may be effectively swamped by the contaminating DNA and generate misleading results. Additionally, performing field work in these environments can be difficult, as researchers generally have limited access …

Agate Fossil Beds National Monument, Paleontological Resources Management Plan (Public Version), Scott Kottkamp, Vincent L. Santucci, Justin S. Tweet, Jessica De Smet, Ellen Stark

United States National Park Service: Publications

Executive Summary

Since Agate Springs Ranch was founded by James H. Cook in 1887, exquisite examples of transitional Miocene mammalian fauna have been found along this stretch of the Niobrara River valley. Collectively these paleontological discoveries, along with the existing archeological and historical Native American collection, were the basis for establishing Agate Fossil Beds National Monument (AGFO) as a unit of the National Park System (NPS). The fossil remains from the Harrison and Anderson Ranch formations span a short, but important, time period within the Miocene Epoch. AGFO has provided science with an intimate look into North American mammalian evolution …

Assessment Of Switchgrass-Based Bioenergy Supply Using Gis-Based Fuzzy Logic And Network Optimization In Missouri (U.S.A.), Gia Nguyen, Erik Lyttek, Pankaj Lal, Taylor Wieczerak, Pralhad Burli

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Bioenergy has been globally recognized as one of the sustainable alternatives to fossil fuels. An assured supply of biomass feedstocks is a crucial bottleneck for the bioenergy industry emanating from uncertainties in land-use changes and future prices. Analytical approaches deriving from geographical information systems (GIS)-based analysis, mathematical modeling, optimization analyses, and empirical techniques have been widely used to evaluate the potential for bioenergy feedstock. In this study, we propose a three-phase methodology integrating fuzzy logic, network optimization, and ecosystem services assessment to estimate potential bioenergy supply. The fuzzy logic analysis uses multiple spatial criteria to identify suitable biomass cultivating regions. …

Evaluating Airsoft Electric Guns For Control Of Invasive Brown Treesnakes, Adam J. Knox, Björn Lardner, Amy Yackel Adams, Robert N. Reed

United States Geological Survey: Staff Publications

Firearms are often used in lethal control of invasive vertebrates, but safety and regulatory aspects limit the circumstances under which they can be used. During August 2016 at the Brown Treesnake Project laboratory on Guam, we evaluated hobby‐grade Airsoft Electric Guns (AEGs; a lower powered, less‐hazardous, and less‐regulated alternative to firearms) for capture and control of small animals, with specific emphasis on invasive brown treesnakes (Boiga irregularis). Tests of AEGs differing in power with ammunition (plastic pellets) masses ranging from 0.20 to 0.39 g, fired at gelatin blocks from distances of 4, 8, and 12 m, showed that …

Foliar Application Of Low Concentrations Of Titanium Dioxide And Zinc Oxide Nanoparticles To The Common Sunflower Under Field Conditions, Marek Kolenčík, Dávid Ernst, Martin Urík, Ľuba Ďurišová, Marek Bujdoš, Martin Šebesta, Edmund Dobročka, Samuel Kšiňan, Ramakanth Illa, Qian Yu, Huan Feng, Ivan Černý, Veronika Holišová, Gabriela Kratošová

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Nano-fertilisers have only recently been introduced to intensify plant production, and there still remains inadequate scientific knowledge on their plant-related effects. This paper therefore compares the effects of two nano-fertilisers on common sunflower production under field conditions. The benefits arising from the foliar application of micronutrient-based zinc oxide fertiliser were compared with those from the titanium dioxide plant-growth enhancer. Both the zinc oxide (ZnO) and titanium dioxide (TiO₂) were delivered by foliar application in nano-size at a concentration of 2.6 mg·L⁻¹. The foliar-applied nanoparticles (NPs) had good crystallinity and a mean size distribution under 30 nm. …

Underground Phased Arrays And Beamforming Applications, Abdul Salam, Usman Raza

Faculty Publications

This chapter presents a framework for adaptive beamforming in underground communication. The wireless propagation is thoroughly analyzed to develop a model using the soil moisture as an input parameter to provide feedback mechanism while enhancing the system performance. The working of array element in the soil is analyzed. Moreover, the effect of soil texture and soil moisture on the resonant frequency and return loss is studied in detail. The wave refraction from the soil–air interface highly degrades the performance of the system. Furthermore, to beam steering is done to achieve high gain for lateral component improving the UG communication. The …

Current Advances In Internet Of Underground Things, Abdul Salam, Usman Raza

Faculty Publications

The latest developments in Internet of Underground Things are covered in this chapter. First, the IOUT Architecture is discussed followed by the explanation of the challenges being faced in this paradigm. Moreover, a comprehensive coverage of the different IOUT components is presented that includes communications, sensing, and system integration with the cloud. An in-depth coverage of the applications of the IOUT in various disciplines is also surveyed. These applications include areas such as decision agriculture, pipeline monitoring, border control, and oil wells.

Soil Moisture And Permittivity Estimation, Abdul Salam, Usman Raza

Faculty Publications

The soil moisture and permittivity estimation is vital for the success of the variable rate approaches in the field of the decision agriculture. In this chapter, the development of a novel permittivity estimation and soil moisture sensing approach is presented. The empirical setup and experimental methodology for the power delay measurements used in model are introduced. Moreover, the performance analysis is explained that includes the model validation and error analysis. The transfer functions are reported as well for soil moisture and permittivity estimation. Furthermore, the potential applications of the developed approach in different disciplines are also examined.

Signals In The Soil: Subsurface Sensing, Abdul Salam, Usman Raza

Faculty Publications

In this chapter, novel subsurface soil sensing approaches are presented for monitoring and real-time decision support system applications. The methods, materials, and operational feasibility aspects of soil sensors are explored. The soil sensing techniques covered in this chapter include aerial sensing, in-situ, proximal sensing, and remote sensing. The underlying mechanism used for sensing is also examined as well. The sensor selection and calibration techniques are described in detail. The chapter concludes with discussion of soil sensing challenges.

Decision Agriculture, Abdul Salam, Usman Raza

Faculty Publications

In this chapter, the latest developments in the field of decision agriculture are discussed. The practice of management zones in digital agriculture is described for efficient and smart faming. Accordingly, the methodology for delineating management zones is presented. Modeling of decision support systems is explained along with discussion of the issues and challenges in this area. Moreover, the precision agriculture technology is also considered. Moreover, the chapter surveys the state of the decision agriculture technologies in the countries such as Bulgaria, Denmark, France, Israel, Malaysia, Pakistan, United Kingdom, Ukraine, and Sweden. Finally, different field factors such as GPS accuracy and …

Autonomous Irrigation Management In Decision Agriculture, Abdul Salam, Usman Raza

Faculty Publications

In this chapter, the important application of autonomous irrigation management in the field decision agriculture is discussed. The different types of sensor-guided irrigation systems are presented that includes center pivot systems and drip irrigation systems. Their sensing and actuator components are with detailed focus on real-time decision-making and integration to the cloud. This chapter also presents irrigation control systems which takes, as an input, soil moisture and temperature from IOUT and weather data from Internet and communicate with center pivot based irrigation systems. Moreover, the system architecture is explored where development of the nodes including sensing and actuators is presented. …

Variable Rate Applications In Decision Agriculture, Abdul Salam, Usman Raza

Faculty Publications

In this chapter, the variable rate applications (VRA) are presented for the field of decision agriculture. The characteristics of VRA control systems are described along with control hardware. Different types of VRA systems are discussed (e.g., liquid VRA systems and dry VRA systems). A case study is also explored in this regard. Moreover, recent advances and future trends are also outlined. Accordingly, a sustainable variable-rate irrigation scheduling is studied where different hardware and software component of the cyber-physical system are considered. Finally, chapter is concluded with a novel sensor deployment methodology.

Geology, Soils And Climate Of The Margaret River Wine Region, Peter J. Tille, Angela Stuart-Street, Peter S. Gardiner

All other publications

This report is an extract from the broader description and analysis of the Geology, soils and climate of Western Australia's wine regions. It expands on the brief descriptions in the second edition of 'Viticulture' (Coombe & Dry 2004) concerning the soils and landscapes of Western Australia’s main wine growing regions. We have tailored this report extract to the specific needs of the Margaret River wine region. It contains local soil names and soil-landscape zones and systems maps.

The wine industry recognises the importance of giving customers an understanding of the vines’ environment and how that may influence wine character …

Evaluation Of Groundwater Sodium And Sodium Uptake In Taxodium And Its Hybrids On Galveston Island, Texas, Daniel Morgan

Electronic Theses and Dissertations

In September 2008, Hurricane Ike swept through the Gulf of Mexico striking the Gulf Coast, claiming hundreds of lives and causing billions of dollars in damage. The hurricane left behind elevated sea salt concentrations in the soil and groundwater, preventing the unaided return of live oaks and other species to the island. To determine effective ways to ameliorate the elevated Na⁺ concentrations in the soil, eight treatments were applied to the soil and combinations of three species of plants, live oak (Quercus virginiana), hybrid bald cypress (Taxodium ‘T406’), and yellow hibiscus (Hibiscus hamabo …

The Legacy Of Mining In Southwest Missouri: Past And Present Conditions Of The Tri-State Mining District, Anastasia M C Mcclanahan

Graduate Theses/Dissertations

The historic Tri-State Mining District (TSMD) of southwestern Missouri, southeastern Kansas, and northeastern Oklahoma has a history of lead and zinc mining that extended over a hundred years. During the district’s peak production period, the TSMD was one of the world’s largest producers of lead and zinc. The mining activities in the TSMD produced economic growth that supported the local communities and were essential to the victory of the Allied Forces during World War I and World War II. Beginning in the 1920s, the mining activities in the district slowly began to cease due to depletion of metal ores and …

Nitrate Dynamics And Source Within Nested Watersheds Of An Agricultural Stream, Nebraska, Usa, Galen Richards

School of Natural Resources: Dissertations, Theses, and Student Research

Nitrate concentrations have been increasing throughout the globe, primarily due to heightened agricultural activity. Nitrate concentrations in Bazile Creek, located in Northeastern Nebraska, have been steadily rising since the early 2000s. Groundwater nitrate concentrations within the Bazile Creek watershed are high (> 10 mg/L nitrate-N), and there is strong connectivity between groundwater and surface water systems. This study aimed to better understand temporal nitrate concentration variability within the watershed through sampling tributaries and the main channel during baseflow conditions. Nitrate source was also investigated though the use of dual δ¹⁵N and δ¹⁸O nitrate isotopes, with samples …