Natural Resources and Conservation Commons^™

H7n1 Low Pathogenicity Avian Influenza Viruses In Poultry In The United States During 2018, Dong-Hun Lee, Mary Lea Killian, Thomas J. Deliberto, Xiu-Feng Wan, Li Lei, David E. Swayne, Mia Kim Torchetti

United States Department of Agriculture Wildlife Services: Staff Publications

Here, we report three detections of H7N1 low pathogenicity avian influenza viruses (LPAIV) from poultry in Missouri (n¼2) and Texas (n¼1) during February and March 2018. Complete genome sequencing and comparative phylogenetic analysis suggest that the H7 LPAIV precursor viruses were circulating in wild birds in North America during the fall and winter of 2017 and spilled over into domestic poultry in Texas and Missouri independently during the spring of 2018.

RESUMEN. Nota de investigacio´n—Virus de la influenza aviar de baja patogenicidad H7N1 en avicultura, Estados Unidos, 2018. En este art´ıculo se reportan tres detecciones del virus de influenza aviar …

Surgical Sterilization Impacts On Behavior Of Coyote Pairs, Tyler Leary, Jeffrey T. Schultz, Julie K. Young

United States Department of Agriculture Wildlife Services: Staff Publications

Coyotes (Canis latrans) involved in depredation of livestock, an act frequently resulting in human-wildlife conflict, often do so out of necessity for provisioning pups. Surgical sterilization methods such as vasectomy that preserve gonadal hormones have been successful in reducing depredation by free-ranging coyotes while allowing individuals to maintain territoriality and mate fidelity. However, use of these methods remain costly and ineffective for wide-scale use. Given the alternative proposal of using chemical sterilization techniques, we investigated whether the use of hormone-altering sterilization methods impacted behavior of captive coyote pairs (i.e., male-female pair bonds). Our objective was to evaluate behavior …

Dietary Flexibility Of Wood Storks In Response To Human-Induced Rapid Environmental Change, Betsy A. Evans, Jessica A. Klassen, Dale E. Gawlik

United States Department of Agriculture Wildlife Services: Staff Publications

Human-induced rapid environmental change (HIREC) has altered landscape processes and negatively impacted many species globally. Some of the most dramatic changes have been in wetlands where flows have been disrupted, and new wetlands have been created to retain runoff. In response to disrupted natural wetland conditions, Wood Stork (Mycteria americana) populations in South Florida have significantly declined over the past several decades. Despite the well-documented sensitivity of Wood Storks to natural wetland conditions, Wood Storks are often observed foraging in roadside created wetlands; however, the availability of prey in created wetlands is currently unknown. We sampled natural and created wetlands …

Space Use In Free-Ranging Canids: Are Gonadal Hormones Required For Territory Maintenance?, Eric M. Gese, Patricia A. Terletzky

United States Department of Agriculture Wildlife Services: Staff Publications

Fertility control among carnivores has been used to reduce depredations on livestock and wild neonates, population control, modify behavior, inhibit genetic introgression, and reduce human–wildlife conflicts. Although there is considerable knowledge on techniques to sterilize carnivores, there is little information concerning how the absence of gonadal hormones influences behavior, space use, and survival of wild canids. We examined territorial fidelity, home-range size and overlap, and survival of 179 surgically sterilized free-ranging canids (124 coyotes (Canis latrans Say, 1823), 55 coyote – red wolf (Canis rufus Audubon and Bachman, 1851) hybrids) with gonadal hormones present (tubal-ligated females (n = 70), vasectomized …

Social Identity And Acceptability Of Wild Pig (Sus Scrofa) Control Actions: A Case Study Of Texas Hunters, Lauren Jaebker, Tara L. Teel, Alan D. Bright, Hailey E. Mclean, John M. Tomeček, Maureen G. Frank, Rachael L. Connally, Stephanie A. Shwiff, Keith M. Carlisle

United States Department of Agriculture Wildlife Services: Staff Publications

Wild pigs (Sus scrofa) pose significant challenges to wildlife managers. This research explored Texas hunters’ acceptability of wild pig control actions, and whether acceptability varied according to hunters’ affiliation with four different categories of natural resource organizations as an indicator of social identity. Results of a survey (n = 37,317) revealed that most hunters were accepting of all control actions except toxicants and non-lethal deterrents. Mean acceptability scores for each action differed significantly across the four affiliation categories, but effect sizes were minimal. Hunters affiliated with agricultural organizations were the most accepting of control actions, while hunters with …

Influenza A Virus Surveillance, Infection And Antibody Persistence In Snow Geese (Anser Caerulescens), Susan A. Shriner, J. Jeffrey Root, Jeremy W. Ellis, Kevin T. Bentler, Kaci K. Vandalen, Thomas Gidlewski, Sarah N. Bevins

United States Department of Agriculture Wildlife Services: Staff Publications

Some snow geese (Anser caerulescens) migrate between Eurasia and North America and exhibit high seroprevalence for influenza A viruses (IAVs). Hence, these birds might be expected to play a role in intercontinental dispersal of IAVs. Our objective in this manuscript was to characterize basic incidence and infection characteristics for snow geese to assess whether these birds are likely to significantly contribute to circulation of IAVs. Thus, we 1) estimated snow goose infection prevalence by summarizing > 5,000 snow goose surveillance records, 2) experimentally infected snow geese with a low pathogenic IAV (H4N6) to assess susceptibility and infection dynamics and …

Social Structure Defines Spatial Transmission Of African Swine Fever In Wild Boar, Kim M. Pepin, Andrew J. Golnar, Tomasz Podgórski

United States Department of Agriculture Wildlife Services: Staff Publications

The spatial spread of infectious disease is determined by spatial and social processes such as animal space use and family group structure. Yet, the impacts of social processes on spatial spread remain poorly understood and estimates of spatial transmission kernels (STKs) often exclude social structure. Understanding the impacts of social structure on STKs is important for obtaining robust inferences for policy decisions and optimizing response plans. We fit spatially explicit transmission models with different assumptions about contact structure to African swine fever virus surveillance data from eastern Poland from 2014 to 2015 and evaluated how social structure affected inference of …

Occurrence Of Mesocarnivores In Montane Sky Islands: How Spatial And Temporal Overlap Informs Rabies Management In A Regional Hotspot, Amanda M. Veals, John Koprowski, David L. Bergman, Kurt C. Vercauteren, David B. Wester

United States Department of Agriculture Wildlife Services: Staff Publications

Interspecific interactions among mesocarnivores can influence community dynamics and resource partitioning. Insights into these interactions can enhance understanding of local ecological processes that have impacts on pathogen transmission, such as the rabies lyssavirus. Host species ecology can provide an important baseline for disease management strategies especially in biologically diverse ecosystems and heterogeneous landscapes. We used a mesocarnivore guild native to the southwestern United States, a regional rabies hotspot, that are prone to rabies outbreaks as our study system. Gray foxes (Urocyon cinereoargenteus), striped skunks (Mephitis mephitis), bobcats (Lynx rufus), and coyotes (Canis latrans) share large portions of their geographic ranges …

Sars-Cov-2 Exposure In Wild White-Tailed Deer (Odocoileus Virginianus), Jeffrey C. Chandler, Sarah N. Bevins, Jeremy W. Ellis, Timothy J. Linder, Rachel M. Tell, Melinda Jenkins-Moore, J. Jeffrey Root, Julianna B. Lenoch, Suelee Robbe-Austerman, Thomas J. Deliberto, Tom Gidlewski, Mia Kim Torchetti, Susan A. Shriner

United States Department of Agriculture Wildlife Services: Staff Publications

Widespread human SARS-CoV-2 infections combined with human–wildlife interactions create the potential for reverse zoonosis from humans to wildlife. We targeted white-tailed deer (Odocoileus virginianus) for serosurveillance based on evidence these deer have angiotensin-converting enzyme 2 receptors with high affinity for SARS-CoV-2, are permissive to infection, exhibit sustained viral shedding, can transmit to conspecifics, exhibit social behavior, and can be abundant near urban centers. We evaluated 624 prepandemic and postpandemic serum samples from wild deer from four US states for SARS-CoV-2 exposure. Antibodies were detected in 152 samples (40%) from 2021 using a surrogate virus neutralization test. A subset of samples …

Detection Of Two Dissimilar Chronic Wasting Disease Isolates In Two Captive Rocky Mountain Elk (Cervus Canadensis) Herds: Two Distinctive Chronic Wasting Disease Isolates Identified In Captive Elk, Tracy A. Nichols, Eric M. Nicholson, Yihui Liu, Wanyin Tao, Terry R. Spraker, Michael Lavelle, Justin W. Fischer, Qingzhong Kong, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Chronic wasting disease (CWD) continues to spread in both wild and captive cervid herds in North America and has now been identified in wild reindeer and moose in Norway, Finland and Sweden. There is limited knowledge about the variety and characteristics of isolates or strains of CWD that exist in the landscape and their implications on wild and captive cervid herds. In this study, we evaluated brain samples from two captive elk herds that had differing prevalence, history and timelines of CWD incidence. Site 1 had a 16-year history of CWD with a consistently low prevalence between 5% and 10%. …

Environmental Dna For Conservation, Antoinette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

Biodiversity must be documented before it can be conserved. However, it may be difficult to document species with few individuals (Thompson, 2013; Goldberg et al., 2016), thus it requires a multitude of tools to detect species that occur in low numbers or are elusive (see the various chapters in this volume). One tool that has become useful for conservation efforts utilizes environmental DNA, which is DNA shed into the environment by organisms (eDNA; Taberlet et al., 2018). Typically this involves taking environmental samples such as soil, water, air, or using biological surrogates for sampling biodiversity (e.g. leeches, sponges, carrion flies, …

Allometric Regression Of Snake Body Length From Head Image Measurements, Shane R. Siers

United States Department of Agriculture Wildlife Services: Staff Publications

As in many fields of wildlife research and management, camera devices and photogrammetry have become an integral part of the toolkit for exploring otherwise‐unseen aspects of the biology, behavior, and control of the invasive brown treesnake (Boiga irregularis) on Guam. Because brown treesnakes are cryptic and nocturnal, and nearly all aspects of their ecology are influenced by snake size, methods are needed to estimate snake size from images captured by infrared wildlife cameras. Unfortunately, it is difficult to capture images of an entire snake’s length at a controlled distance from a simple camera setup. Here, I describe the …

Increased Abundance Of The Common Raven Within The Ranges Of Greater And Gunnison Sage-Grouse: Influence Of Anthropogenic Subsidies And Fire, Jonathan B. Dinkins, Lindsey R. Perry, Jeffrey L. Beck, Jimmy D. Taylor

United States Department of Agriculture Wildlife Services: Staff Publications

The common raven (Corvus corax; raven) is native to North America and has increased in abundance, especially throughout western North America, during the last century. Human subsidies have facilitated raven dispersal into less suitable habitats and enabled these populations to maintain higher annual survival and reproduction. Concomitantly, overabundant raven populations are impacting other native at-risk species such as the greater sage-grouse (Centrocercus urophasianus) and potentially the Gunnison sage-grouse (C. minimus). Using Breeding Bird Survey data from 1995–2014, we evaluated raven count data to quantitatively describe changes in abundance and expansion into sagebrush ( …

A Novel Technique To Improve Capture Success Of Common Ravens, Lindsey R. Perry, Terrah M. Owens, Zachary T. Slick, Jimmy Taylor, Jonathan B. Dinkins

United States Department of Agriculture Wildlife Services: Staff Publications

Traditional trapping techniques for common ravens (Corvus corax; raven) require significant effort, often produce low capture rates, and cannot be used in some situations. We designed a 3-m noose pole to secure ravens from nocturnal roost locations while using a strobe spotlight to temporarily disorient them. We collected measures of trapping efficiency and contrasted them with padded leghold traps also used in the study. We effectively implemented our noose pole method in July and August of 2018, 2019, and 2020 in the Baker and Cow Lakes sage-grouse (Centrocercus urophasianus) Priority Areas of Conservation in eastern Oregon, USA, which yielded trapping …

Change Detection And Landscape Similarity Comparison Using Computer Vision Methods, Karim Malik Wilfrid Laurier University

Theses and Dissertations (Comprehensive)

Human-induced disturbances of terrestrial and aquatic ecosystems continue at alarming rates. With the advent of both raw sensor and analysis-ready datasets, the need to monitor ecosystem disturbances is now more imperative than ever; yet the task is becoming increasingly complex with increasing sources and varieties of earth observation data. In this research, computer vision methods and tools are interrogated to understand their capability for comparing spatial patterns. A critical survey of literature provides evidence that computer vision methods are relatively robust to scale and highlights issues involved in parameterization of computer vision models for characterizing significant pattern information in a …

First Record Of Blacknape Large-Eye Bream Gymnocranius Satoi (Perciformes: Lethrinidae) In The Philippines, Nicko Amor Flores, Jade Tifany Rey, Jeffrey T. Williams, Kent Carpenter, Mudjekeewis Santos

Biological Sciences Faculty Publications

The Philippines has been regarded as the center of the center of marine shorefish biodiversity, having the highest number of fish species per square area in the world. The blacknape large-eye bream, Gymnocranius satoi, has been reported to occur from Southern Japan, Taiwan to Northwestern Australia and to the Coral Sea, but has not previously been recorded from the Philippines. From 2011 – 2019, the National Fisheries Research and Development Institute (NFRDI) collaborated with the National Museum of Natural History of the Smithsonian Institution (NMNH/SI), USA, and the Old Dominion University (ODU), Virgina, USA, to inventory all commercial fish …

Nanomaterials In The Environment, Human Exposure Pathway, And Health Effects: A Review, Arindam Malakar, Sushil R. Kanel, Chittaranjan Ray, Daniel D. Snow, Mallikarjuna N. Nadagouda

Daugherty Water for Food Global Institute: Faculty Publications

Nanomaterials (NMs), both natural and synthetic, are produced, transformed, and exported into our environment daily. Natural NMs annual flux to the environment is around 97% of the total and is significantly higher than synthetic NMs. However, synthetic NMs are considered to have a detrimental effect on the environment. The extensive usage of synthetic NMs in different fields, including chemical, engineering, electronics, and medicine, makes them susceptible to be discharged into the atmosphere, various water sources, soil, and landfill waste. As ever-larger quantities of NMs end up in our environment and start interacting with the biota, it is crucial to understand …

Baseflow Nitrate Dynamics Within Nested Watersheds Of An Agricultural Stream In Nebraska, Usa, Galen Richards, Troy E. Gilmore, Aaron R. Mittelstet, Tiffany Messer, Daniel D. Snow

Daugherty Water for Food Global Institute: Faculty Publications

There is a need to evaluate high surface nitrate concentrations across agricultural watersheds, both spatially and temporally, to increase understanding of source and timing of nitrogen loads in streams and rivers. Bazile Creek is a high-nitrate stream originating in the agriculturally intensive Bazile Groundwater Management Area of Eastern Nebraska, USA. It is a gaining stream that receives groundwater with high nitrate concentrations originating from nonpoint sources. The objective of this study was to determine spatial and temporal variability of baseflow nitrate concentrations in Bazile Creek and its tributaries and to relate this variability to watershed characteristics. Surface-water nitrate samples were …

Surveillance Of Plasticizers, Bisphenol A, Steroids And Caffeine In Surface Water Of River Ganga And Sundarban Wetland Along The Bay Of Bengal: Occurrence, Sources, Estrogenicity Screening And Ecotoxicological Risk Assessment, Paromita Chakraborty, Nancy W. Shappell, Moitraiyee Mukhopadhyay, Sathaporn Onanong, Daniel D. Snow

Daugherty Water for Food Global Institute: Faculty Publications

The transboundary River Ganga serves as a conduit for meltwater from the Himalayas and is a major freshwater source for two thirds of Indian population before emptying into the Sundarban Delta, the largest estuary in the Bay of Bengal. Endocrine disrupting compounds (EDCs) such as phthalic acid esters (PAEs) and bisphenol A (BPA) used as organic plastic additives can pollute the aquatic environment receiving plastic litter. Hence, we have investigated these EDCs in water samples from Ganga and Sundarban wetland of India. Since these compounds exhibit estrogenic potential, we have further measured steroids and evaluated the estrogenic activity (estradiol equivalents, …

Transmission Routes Of The Microbiome And Resistome From Manure To Soil And Lettuce, Yuepeng Sun, Daniel D. Snow, Harkamal Walia, Xu Li

Daugherty Water for Food Global Institute: Faculty Publications

The land application of animal manure can introduce manure microbiome and resistome to croplands where food crops are grown. The objective of this study was to characterize the microbiome and resistome on and in the leaves of lettuce grown in manured soil and identify the main transmission routes of microbes and antibiotic resistance genes (ARGs) from soil to the episphere and endosphere of lettuce. Shotgun metagenomic results show that manure application significantly altered the composition of the microbiome and resistome of surface soil. SourceTracker analyses indicate that manure and original soil were the main source of the microbiome and resistome …

Understanding The Effects Of Complex Topography On Cover Crop Dynamics And Maize Production In Kentucky Agroecosystems, Samuel John Leuthold

Theses and Dissertations--Plant and Soil Sciences

In Central Kentucky, rolling hill cropland presents a number of challenges related to soil sustainability. Increased topographic complexity can lead to increased erosion, inefficient crop nutrient use and increased nutrient loss. Further, grain crop yields can be variable across both space and time in rolling hill fields and are less resilient to changes in weather conditions than flatter, more homogeneous areas. More than 30% of cropland in Kentucky has a slope greater than 3⁰, which means a large swath of the row crop production land in the state is at increased risk of contribution to soil and water resource degradation. …

"Prophet", Terry A. Messmer

Human–Wildlife Interactions

This is the letter from the editor-in-chief.

An Investigation Of Endangered And Threatened Plants Using Phylogenomics, Phylogenetic Metrics, And Geography To Prevent Species Loss, Phyllis H. Pischl

Graduate Research Theses & Dissertations

The conservation of endangered and threatened plant species plays an integral part of preserving biodiversity. Loss of habitat is one of the main reasons that plants become endangered or threatened. In Illinois much of the native habitat has been lost to the conversion of industry, agriculture and urban areas. The goals of this dissertation are to 1) determine where endangered and threatened species are finding habitats in relation to land use, 2) produce a robust phylogeny of endangered and threatened species of grasses and apply phylogenetic diversity analysis to better understand the plight of these species, and 3) use climate …

Fly On The Wall: Comparing Arthropod Communities Between Islands With And Without House Mice (Mus Musculus), Wieteke A. Holthuijzen

Graduate Research Theses & Dissertations

Invertebrates are key to island ecosystems but impacts from invasive mammalian predators are not well documented or understood. Given this knowledge gap, we studied terrestrial arthropod communities in the presence of a common invasive rodent (house mice, Mus musculus) on a subtropical atoll—Midway Atoll National Wildlife Refuge (MANWR). Here, invasive mice recently began to attack and depredate nesting seabirds, prompting a mouse eradication. Although eradication planning efforts are underway, uncertainty remains regarding the ecosystem’s response to mouse removal. As part of a pre-eradication investigation, we conducted a baseline survey of MANWR’s arthropod community structure and diversity, comparing islands with and …

Species Selection And Plantation Management In Enrichment Planting With Native Timber Species In The Panama Canal Watershed, Abigail A. Marshall

Graduate Student Theses, Dissertations, & Professional Papers

Large areas of the Panama Canal Watershed have been converted to monocultures of teak (Tectonia grandis), a non-native timber species that is generally not providing hoped-for economic and ecological benefits of Forest Landscape Restoration. Enrichment planting offers a potential strategy for revitalizing these underperforming plantations through the addition of high-value, native species to the understory, but more information is needed to guide implementation and management in this region and other tropical areas. I assessed the performance of six promising native species (B. crassifolia, D. retusa, D. oleifera, H. alchorneoides, P. pinnatum, T. amazonia) as an enrichment …

Transboundary Marine Management In The Sulu-Sulawesi Seascape, Lindsey G. Ellett

Graduate Student Theses, Dissertations, & Professional Papers

Transboundary conservation aims to facilitate environmental conservation and management at the ecosystem level by operating across political boundaries, through the cooperation of two or more countries. Though there is increased interest and advocation for transboundary conservation initiatives around the world, there remains a limited understanding of how they function on-the-ground. Within this study, I address these gaps in knowledge through two phases of research, both focusing on the Sulu-Sulawesi Seascape as a case study site. Phase I involved a policy analysis of Indonesian, Malaysia, and Philippine policies related to fisheries, coastal zones and protected areas, and environmental quality. Through this …

Policy And Collaborative Governance: Case Studies Of Three Wildlife Crossings, Nicholas Maya

Graduate Student Theses, Dissertations, & Professional Papers

Over the last several decades, the number of wildlife-vehicle collisions in North America has significantly increased, driving substantial loss of human life and wildlife and economic costs. The most effective wildlife-vehicle collision mitigation is wildlife crossing structures (undercrossings and overcrossings), with some studies suggesting they can reduce wildlife-vehicle collisions by 97% when paired with wildlife exclusion fencing. However, cost, funding, jurisdiction, land ownership, and local support are limiting factors in constructing these crossing structures. This paper presents case studies of three crossing projects in Snoqualmie, Washington, Teton County, Wyoming, and Summit County, Colorado, to illustrate the similarities and differences in …

Distribution Of Green Spaces In Omaha, Nebraska, Sofia Gavia

Department of Environmental Studies: Undergraduate Student Theses

The distribution of parks often depends on the races, ethnicity, and socioeconomic class of a community’s households. Parks and green spaces provides community residents recreational opportunities, economic benefits, and improves community public health. The unequal distribution of parks and green spaces in a city is a social issue found across the country. Limited research has been done on the relationship between green spaces and park access and social justice in Omaha, Nebraska. This study discusses whether there is a difference in how parks are distributed in Omaha, NE in terms of social justice and equitable distribution. Research is done using …

Analysis Of Drinking Water Disinfection Options, Bryce Carlen

Department of Environmental Studies: Undergraduate Student Theses

This thesis utilizes existing research to provide a framework that can be used for community and disaster planning. It analyses the critical process of water disinfection for drinking water. It focuses on chemical, distillation, and ultraviolet treatments in both centralized and point-of-use treatment. This thesis aims to provide a method for communities to determine the optimal water treatment, utilizing a framework based on weighted criteria. The decision-making framework is an easy-to-use and flexible process that communities can tailor for their specific needs to find the optimal treatment relative to their needs. In this study’s generalized example, ultraviolet treatment and distillation …

Audit Of Waste Collected Over One Week From Superior Dental Health Of Lincoln, Bryclin Alstrom

Department of Environmental Studies: Undergraduate Student Theses

A waste audit of Superior Dental Health of Lincoln was conducted in order to propagate the implementation of sustainable waste management practices within the company. Differentiating between hazardous waste and solid waste is necessary for environmentally friendly waste management and ceasing the spread of infectious pathogens. The audit identified nine different materials contributing to the biomedical waste stream of the company. Of which, personal protective equipment (PPE) is of major concern due to the financial commitment necessary to acquire / dispose of these products, as well as the strain in supply due to the current COVID-19 pandemic. The results of …