Earth Sciences Commons^™

Gene Transcription In Sea Otters (Enhydra Lutris); Development Of A Diagnostic Tool For Sea Otter And Ecosystem Health, Lizabeth Bowen, A. Keith Miles, Michael Murray, Martin Haulena, Judy Tuttle, William Van Bonn, Lance Adams, James L. Bodkin, Brenda Ballachey, James A. Estes, M. Tim Tinker, Robin Keister, Jeffrey L. Stott

United States Geological Survey: Staff Publications

Gene transcription analysis for diagnosing or monitoring wildlife health requires the ability to distinguish pathophysiological change from natural variation. Herein, we describe methodology for the development of quantitative real-time polymerase chain reaction (qPCR) assays to measure differential transcript levels of multiple immune function genes in the sea otter (Enhydra lutris); sea otter-specific qPCR primer sequences for the genes of interest are defined. We establish a ‘reference’ range of transcripts for each gene in a group of clinically healthy captive and free-ranging sea otters. The 10 genes of interest represent multiple physiological systems that play a role in immuno-modulation, …

Climb To The Ice, Richard Vaughan

Articles by Maurer Faculty

The article, originally presented as a lecture, discusses George Bird Grinnell's 1887 climb of the Montana glacier that eventually become known as Grinnell Glacier. Grinnell’s efforts to establish Glacier National Park are detailed. Grinnell's previously unpublished descriptions of the glacier and its surrounding area are analyzed by the author.

Originally delivered as a lecture at the Montana History Conference, October 2, 2010. Full issue available at: http://issuu.com/um_crown_gye/docs/crownofthecontinent-autumn2012

Trends In Record-Breaking Temperatures For The Conterminous United States, Clinton M. Rowe, Logan E. Derry

Department of Earth and Atmospheric Sciences: Faculty Publications

In an unchanging climate, record-breaking temperatures are expected to decrease in frequency over time, as established records become increasingly more difficult to surpass. This inherent trend in the number of record-breaking events confounds the interpretation of actual trends in the presence of any underlying climate change. Here, a simple technique to remove the inherent trend is introduced so that any remaining trend can be examined separately for evidence of a climate change. As this technique does not use the standard definition of a broken record, our records* are differentiated by an asterisk. Results for the period 1961– 2010 indicate that …

Rinded Iron-Oxide Concretions: Hallmarks Of Altered Siderite Masses Of Both Early And Late Diagenetic Origin, David Loope, Richard Kettler, Karrie A. Weber, Nathan L. Hinrichs, Derek T. Burgess

Department of Earth and Atmospheric Sciences: Faculty Publications

Iron-bearing concretions are valuable records of oxidation states of subsurface waters, but the first concretions to form can be altered drastically during later diagenetic events. Distinctive concretions composed of heavy rinds of iron oxide that surround iron-poor, mud-rich cores are common along bases of fluvial cross-bed sets of the Cretaceous Dakota Formation, Nebraska, USA. Concretion rinds thicken inward and cores contain 46 to 89% void space. Millimeter-scale spherosiderites are abundant in palaeosols that developed in floodplain facies. Evolution of rinded concretions began when intraformational clasts were eroded from sideritic soils, transported, abraded and deposited in river channels. Alteration of siderite …

Climate-Induced Changes In Lake Ecosystem Structure Inferred From Coupled Neo- And Paleoecological Approaches, Jasmine E. Saros, Jeffery R. Stone, Gregory T. Pederson, Krista E.H. Slemmons, Trisha Spanbauer, Anna Schliep, Douglas Cahl, Craig E. Williamson, Daniel R. Engstrom

Department of Earth and Atmospheric Sciences: Faculty Publications

Over the 20th century, surface water temperatures have increased in many lake ecosystems around the world, but long-term trends in the vertical thermal structure of lakes remain unclear, despite the strong control that thermal stratification exerts on the biological response of lakes to climate change. Here we used both neo- and paleoecological approaches to develop a fossil-based inference model for lake mixing depths and thereby refine understanding of lake thermal structure change. We focused on three common planktonic diatom taxa, the distributions of which previous research suggests might be affected by mixing depth. Comparative lake surveys and growth rate experiments …

Calcareous Nannofossil Assemblage Changes Across The Paleocene–Eocene Thermal Maximum: Evidence From A Shelf Setting, Jean M. Self-Trail, David S. Powars, David K. Watkins, Gregory A. Wandless

Department of Earth and Atmospheric Sciences: Faculty Publications

Biotic response of calcareous nannoplankton to abrupt warming across the Paleocene/Eocene boundary reflects a primary response to climatically induced parameters including increased continental runoff of freshwater, global acidification of seawater, high sedimentation rates, and calcareous nannoplankton assemblage turnover. We identify ecophenotypic nannofossil species adapted to low pH conditions (Discoaster anartios, D. araneus, Rhomboaster spp.), excursion taxa adapted to the extremely warm climatic conditions (Bomolithus supremus and Coccolithus bownii), three species of the genus Toweius (T. serotinus, T. callosus, T. occultatus) adapted to warm, rather than cool, water conditions, opportunists adapted to high productivity conditions (Coronocyclus bramlettei, …

Nebraska Statewide Groundwater-Level Monitoring Report 2011, Jesse T. Korus Dr., Mark E. Burbach, Leslie M. Howard

Conservation and Survey Division: Faculty and Staff Publications

No abstract provided.

Three Geologic Cross Sections Across Portions Of Eastern Nebraska Showing Quaternary Lithologic Units And Stratigraphy Of Uppermost Bedrock, Jesse T. Korus, Dana Divine, P. R. Hanson, J. S. Dillon

Conservation and Survey Division: Faculty and Staff Publications

No abstract provided.

Nebraska Statewide Groundwater-Level Monitoring Report 2012, A. R. Young, M. E. Burbach, J. T. Korus, L. M. Howard

Conservation and Survey Division: Faculty and Staff Publications

No abstract provided.

Hydraulic Conductivity Of The High Plains Aquifer Re-Evaluated Using Surface Drainage Patterns, Wei Luo, Darryll T. Pederson

Department of Earth and Atmospheric Sciences: Faculty Publications

The High Plains Aquifer (HPA), underlying parts of 8 states from South Dakota to Texas, is one of the largest fresh water aquifers in the world and accounts for 30% of the groundwater used for irrigation in the US. Determining the distribution of HPA’s hydraulic conductivity (K) is critical for water management and addressing water quality issues. K is traditionally estimated from well pumping data coupled with computer modeling and is known to be highly variable, spanning several orders of magnitude for the same type of rock. Here we show that applying our innovative method of determining effective …

Progressive Abandonment And Planform Changes Of The Central Platte River In Nebraska, Central Usa, Over Historical Timeframes, John D. Horn, R. Matthew Joeckel, Christopher R. Fielding

Department of Earth and Atmospheric Sciences: Faculty Publications

This paper presents data compiled from aerial photography, General Land Office maps (GLOs), and discharge data from the central Platte River in Nebraska that quantify and provide a new understanding of channel evolution and abandonment in a braided stream. Analyses of aerial photographs and GLOs in ArcMap™ show that channel area decreased by an average of 46% from 1938 to 2006 and that channel widths in 1858 were an average of 539% greater than in 2006. Annual discharge during 1942–2006 does not show a clear long-term relationship with the decrease in channel width and area. Rather, stabilization through vegetation of …

Improving Student Attitudes About Learning Science And Student Scientific Reasoning Skills, Douglas K. Duncan, Leilani Arthurs

Department of Earth and Atmospheric Sciences: Faculty Publications

Student attitudes about learning science and student ideas about the nature of science were compared at the end of two astronomy courses taught in Fall 2007, a course with a traditional astronomy curriculum and a transformed course, whose traditional astronomy curriculum was supplemented by an embedded curriculum that explicitly addressed the nature of science and student metacognition (i.e., thinking about one’s own thinking.) The embedded curriculum in the transformed course gave students practice at evaluating examples of valid science and pseudoscience found on the internet; it also provided students opportunities to discuss what they think about learning science. Student attitudes …

Top-Down Estimate Of Dust Emissions Through Integration Of Modis And Misr Aerosol Retrievals With The Geos-Chem Adjoint Model, Jun Wang, Xiaoguang Xu, Daven K. Henze, Jing Zeng, Qiang Ji, Si-Chee Tsay, Jianping Huang

Department of Earth and Atmospheric Sciences: Faculty Publications

Predicting the influences of dust on atmospheric composition, climate, and human health requires accurate knowledge of dust emissions, but large uncertainties persist in quantifying mineral sources. This study presents a new method for combined use of satellite-measured radiances and inverse modeling to spatially constrain the amount and location of dust emissions. The technique is illustrated with a case study in May 2008; the dust emissions in Taklimakan and Gobi deserts are spatially optimized using the GEOSChem chemical transport model and its adjoint constrained by aerosol optical depth (AOD) that are derived over the downwind dark-surface region in China from MODIS …

Holocene Seasonal Variability Inferred From Multiple Proxy Records From Crevice Lake, Yellowstone National Park, Usa, Cathy Whitlock, Walter E. Dean, Sherilyn C. Fritz, Lora R. Stevens, Jeffery R. Stone, Mitchell J. Power, Joseph R. Rosenbaum, Kenneth L. Pierce, Brandi B. Bracht-Flyr

Department of Earth and Atmospheric Sciences: Faculty Publications

A 9400-yr-old record from Crevice Lake, a semi-closed alkaline lake in northern Yellowstone National Park, was analyzed for pollen, charcoal, geochemistry, mineralogy, diatoms, and stable isotopes to develop a nuanced understanding of Holocene environmental history in a region of northern Rocky Mountains that receives both summer and winter precipitation. The limited surface area, conical bathymetry, and deep water (>31 m) of Crevice Lake create oxygen-deficient conditions in the hypolimnion and preserve annually laminated sediment (varves) for much of the record. Pollen data indicate that the watershed supported a closed Pinus-dominated forest and low fire frequency prior to 8200 …

Active Tectonics And Earthquake Destructions In Caves Of Northern And Central Switzerland, Arnfried Becker, Philipp Häuselmann, Jost Eikenberg, Eric Gilli

International Journal of Speleology

The present publication focuses on the study of caves in northern and central Switzerland in order to detect and date historical earthquakes and active tectonic displacements by investigations of broken and resealed or displaced speleothems datable by U/Th and ¹⁴C. While it can be shown that these methods are potentially suitable, the ages obtained are often beyond the range of historically recorded earthquakes, and it cannot be proved that the observed and dated events are related to a seismic event. Particularly this is true for the caves in central Switzerland, where most ages in the Melchsee-Frutt region were beyond …

Book Review: Karst Evolution In The South Mediterranean Area – Environmental Impact On Human Life And Civil Planning, Leonardo Piccini

International Journal of Speleology

No abstract provided.

Book Review: South China Karst Ii, Arrigo A. Cigna

International Journal of Speleology

No abstract provided.

Swimming Performance Of Epigeal And Hypogeal Species Of Characidae, With An Emphasis On The Troglobiotic Stygichthys Typhlops Brittan & Böhlke, 1965, Francisco Alexandre Costa Sampaio, Paolo Santos Pompeu, Hersília De Andrade E Santos, Rodrigo Lopes Ferreira

International Journal of Speleology

Swimming performance of fish constitutes a good ecophysiological tool to evaluate the ability of species to use different types of habitats. In order to understand how the swimming performance is related to the hydraulic environment, we compared the critical velocity of five fish (Characidae): Stygichthys typhlops (groundwater troglobiotic); Piabina argentea and Bryconamericus stramineus (riverine); Hemigrammus marginatus (generalist, found in rivers and floodplains) and Psellogrammus kennedyi (lacustrine). Swimming speed tests were performed in a respirometer-type apparatus. Total body length was the variable that best explained the maximum speed attained by all species under study. The critical swimming speed values (in body …

Relationship Between Carbon Dioxide In Balcarka Cave And Adjacent Soils In The Moravian Karst Region Of The Czech Republic, Jiří Faimon, Monika Ličbinská, Petr Zajíček

International Journal of Speleology

Carbon dioxide concentration, air temperature, and humidity were monitored at (1) two cave sites and (2) three adjacent karst soils. The data over a one-year period are supported by dripwater chemistry and cave visiting frequency. The results indicate that the sources of cave CO2 are anthropogenic and epikarstic ones in addition to ordinary soils. Epikarstic CO2 produced under almost stationary conditions probably control dripwater chemistry and cave’s CO2 maxima. Based on breathing and door opening, anthropogenic activity affects instantaneous cave CO2 levels, depending on site volume/position and visitor number. A conceptual model of the CO2 dynamics of the soil-cave system …

Scientific Drilling Of Speleothems – A Technical Note, Christoph Spötl, David Mattey

International Journal of Speleology

This short article provides detailed descriptions of custom-made and commercially available hand-held drilling gear and options for water-flushing units specifically designed to obtained good-quality core material from speleothems even in remote cave regions. We use small-diameter (6-7 mm) diamond drill bits to obtain aliquots of calcite (as little as a few hundreds of milligram) from the interior of the basal part of in-situ stalagmites. These small cores are used to date the onset of stalagmite growth and occasionally to obtain other compositional information. Larger diameter drill bits produce cores 25-32 mm in diameter and up to 1.3 m in length …

Measurement Of Luminescent Banding In Speleothems: Some Techniques And Limitations, Bryan E. Crowell, William B. White

International Journal of Speleology

Speleothems, especially flowstone and cylindrical stalagmites, exhibit phosphorescence which is often banded on the scale of a few tens of micrometers. The luminescence bands are paleoclimatic records with a very high temporal resolution. A technique has been developed using a laser source and a high resolution Raman spectrometer with microscope and computer-controlled translation stage for both luminescence profiles and luminescence spectroscopy. Luminescence intensity could be measured as a function of traverse distance with a spatial resolution of 2 – 3 μm. Potential sources of error include loss of intensity due to radiation damage by the laser beam, irregularities, cracks, and …

Identifying The Link Between Lineament And Cave Passage Trends To Comprehend Fractures Continuity And Influence On The Kinta Valley Karst System, Solomon Kassa, Bernard Pierson, Weng S. Chow, Jasmi B. Ab. Talib

International Journal of Speleology

The Kinta Valley karst landscape is characterised by residual limestone hills scattered all over the valley. The aim of this study is to ascertain the link between lineament and cave passage orientations, and to identify the main fracture controlling the karst features. To achieve that, standard cave surveying and direct lineament extraction techniques, from a 2.5m resolution spot image, were employed. Six trends of lineaments were obtained from the remnant limestone hills, and their main orientation appears to be in the NNW-SSE. Similarly, various caves were surveyed and mapped; their passage orientation analyses reveal that NNW-SSE is the prominent direction. …

A New Karren Feature: Hummocky Karren, Lukas Plan, Christa Renetzeder, Rudolf Pavuza, Wilfried Körner

International Journal of Speleology

Karren are small-scale landforms on karst surfaces and many types have been described so far. Here we present an apparently new feature which was found on the Hochschwab karst massive in the Northern Calcareous Alps of Austria. So far only few outcrops each having less than 1 m² within a very restricted area have been found. Morphometric analysis reveals that the karren consist of a randomly distributed, dispersed assemblage of small hummocks and depressions in between. The mean distance between neighbouring hummocks is 4 to 5 cm and the mean height is 0.85 cm. Longitudinal sections are gently sinuous. The …

Diversity And Community Assembly Patterns Of Epigean Vs. Troglobiont Spiders In The Iberian Peninsula, Pedro Cardoso

International Journal of Speleology

Cave-obligate organisms usually have smaller ranges and their assemblages have higher beta diversity than their epigean counterparts. Phylogenetic and functional diversity is usually low in cave communities, leading to taxonomic and functional disharmony, with entire groups missing from the subterranean realm. The objective of this work is to compare range, beta diversity, phylogenetic and functional diversity, taxonomic and functional disharmony of epigean versus troglobiont spiders in the Iberian Peninsula.

The median extent of occurrence was found to be 33 times higher for epigean than for cave species. Beta diversity was significantly higher for troglobiont assemblages. Cave assemblages present lower phylogenetic …

Chemical Defense In The Cave-Dwelling Millipede Brachydesmus Troglobius Daday, 1889 (Diplopoda, Polydesmidae), Slobodan E. Makarov, Ljubodrag V. Vujisić, Božidar P. M. Ćurčić, Bojan S. Ilić, Vele V. Tešević, Vlatka E. Vajs, Ivan M. Vučković, Bojan M. Mitić, Luka R. Lučić, Iris Ž. Đorđević

International Journal of Speleology

The troglomorphic millipede Brachydesmus troglobius Daday, 1889 (Polydesmida: Polydesmidae) secretes allomones from glands on both lateral surfaces of its body segments. The secretion was identified by gas chromatography-mass spectrometry (GC-MS) analysis with electron and chemical ionization, and was shown to be composed of a mixture of benzaldehyde, benzyl alcohol, benzoylnitrile, benzoic acid and mandelonitrile benzoate. Hydrogen cyanide was qualitatively identified by the picric acid test. This is the first identification of these compounds in a cave-dwelling polydesmid.

Volcanic Caves: Priorities For Conserving The Azorean Endemic Troglobiont Species, Paulo A.V. Borges Prof., Pedro Cardoso, Isabel R. Amorim, Fernando Pereira, João P. Constância, João C. Nunes, Paulo Barcelos, Paulino Costa, Rosalina Gabriel, Maria L. Dapkevicius

International Journal of Speleology

Azorean lava-tubes and volcanic pits adequately sampled for arthropod fauna were evaluated for species diversity and rarity. An iterative partial multiple regression analysis was performed to produce a multi-criteria index (Importance Value for Cave Conservation, IV-CC) incorporating arthropod species diversity indices but also including indices qualifying cave geological and management features (e.g., the diversity of geological structures, threats, accessibility). Additionally, we calculated complementarity solutions (irreplaceability and Fraction-of-Spare measures) for each cave with different targets per species, i.e., the minimum number of caves needed for each species to be represented either once or twice. Our results clearly show that to preserve …

Cover: Volume 41, Issue 1

International Journal of Speleology

No abstract provided.

Table Of Contents

International Journal of Speleology

No abstract provided.

Chemoorganotrophic Bacteria Isolated From Biodeteriorated Surfaces In Cave And Catacombs, Filomena De Leo, Agnese Iero, Gabrielle Zammit, Clara E. Urzi

International Journal of Speleology

The main objective of this work was the comparative analysis of a large number of bacterial strains isolated from biodeteriorated surfaces in three different sites, namely the catacombs of St. Callistus in Rome, Italy, the catacombs dedicated to St. Agatha in Rabat, Malta and the Cave of Bats in Zuheros, Spain. Our results showed that even considering only culturable chemoorganotrophic bacteria the variability is very high, reflecting the great variety of microhabitats present. Hence any strategies to prevent, control or eliminate the biofilm-embedded microbiota from an archeological surface should take into account a number of considerations as stipulated in our …

Corrosion Of Limestone Tablets In Sulfidic Ground-Water: Measurements And Speleogenetic Implications, Sandro Galdenzi

International Journal of Speleology

The measurement of the weight loss in limestone tablets placed in the Grotta del Fiume (Frasassi, Italy) provided data on the rate of limestone dissolution due to the sulfidic water and on the influence of local environmental conditions.

A linear average corrosion rate of 24 mm ka^-1 was measured in stagnant water, while the values were higher (68-119 mm ka^-1) where the hydrologic conditions facilitate water movement and gas exchanges. In these zones the increase in water aggressivity is due to mixing with descending, O₂-rich, seepage water and is also favored by easier gas exchange …