Earth Sciences Commons^™

Diversity Of Deep-Sea Fishes Of The Easter Island Ecoregion, Erin E. Easton, Javier Sellanes, Carlos F. Gaymer, Naiti A. Morales, Matthias Gorny, Eric Berkenpas

School of Earth, Environmental, & Marine Sciences Faculty Publications

The Easter Island Ecoregion is in the center of the South Pacific gyre and experiences ultra-oligotrophic conditions that could make it highly susceptible to global change and anthropogenic activities, so it is imperative that these regions are characterized and studied so that conservation and sustainable management strategies can be developed. From the few studies from the region, we know that the coastal areas are relatively depauperate and have relatively high rates of endemism. Here, we present a brief report from the first video observations from this region of the deep-dwelling fishes from ROV exploration of benthic communities from …

Recruitment Patterns Of Juvenile Fish At An Artificial Reef Area In The Gulf Of Mexico, Rachel Noel Arney, Catheline Y. M. Froehlich, Richard Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

In 2011 the Texas Parks and Wildlife Department and the Coastal Conservation Association of Texas deployed over 4,000 concrete culverts in a designated artificial reef area off Port Mansfield, Texas, to enhance habitat for sport fish species in the Gulf of Mexico. A study was conducted to assess juvenile fish recruitment at varying culvert densities within the artificial reef area. Standard monitoring units for the recruitment of reef fish (SMURFs) were used to sample juvenile fish, and these collections were compared with visual scuba surveys. The 0.027-m3 SMURFs were placed at four different culvert densities (0, 1–50, 51–100, and 101+ …

Fish Assemblage Structure Indicates Limited Restoration Progress Over A Lustrum Of A Severely Degraded Estuary In Southern Tamaulipas, Mexico, Alejandro Fierro-Cabo, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, & Marine Sciences Faculty Publications

Today the biggest incentive to attempt the restoration and protection of estuarine systems is their widely recognized ecological and economic importance. In the reconstruction of an estuary where the original aquatic communities disappeared before the restoration interventions, the fish assemblage is an adequate source of indicators of initial recovery. Following substantial restoration efforts, this study reports on the biannual for a lustrum monitoring and assessment of a severely degraded estuary (Garrapatas) in terms of its fish assemblage using a reference estuary (Barberena) in Tamaulipas, Mexico. Twenty fishes were associated with the restoring and reference estuaries. Species composition (richness, abundance, dominance) …

Effect Of Different Debranning Degrees On The Qualities Of Whole Wheat Flour And Chinese Steamed Bread, Jikai Zhao, Fengcheng Wang, Wenjun Fu, Mengjie Wang

School of Earth, Environmental, & Marine Sciences Faculty Publications

Abstract: Strong gluten, middle-strong gluten and middle gluten wheat were used as raw materials to obtain whole wheat flour by dry debranning process, and the effect of different debranning degrees on the quality of wheat kernel, whole wheat flour and Chinese steamed bread was evaluated. The results showed that the ash content, hardness index and thousand kernel weight of wheat kernels were decreased with increasing debranning degree by 0.17%, 1.0–1.5 and 1.74–1.82 g, respectively, whereas the volume weight was increased by 22.0–23.4 g/L. The contents of ash and damaged starch in whole wheat flour were decreased by 0.12%–0.14% and 1.0–2.1 …

Molecular And Biochemical Responses Of Hypoxia Exposure In Atlantic Croaker Collected From Hypoxic Regions In The Northern Gulf Of Mexico, Md. Saydur Rahman, Peter Thomas

School of Earth, Environmental, & Marine Sciences Faculty Publications

A major impact of global climate change has been the marked increase worldwide in the incidence of coastal hypoxia (dissolved oxygen, DOhif-α; neuronal nitric oxide synthase, nNOS; and insulin-like growth factor binding protein, igfbp mRNAs and protein carbonyl (PC, an oxidative stress indicator) content were elevated several-fold in brain and liver tissues of croaker collected from nGOM hypoxic sites. All of these molecular and biochemical biomarkers were also upregulated ~3-10-fold in croaker brain and liver tissues within 1–2 days of hypoxia exposure in controlled laboratory experiments. These results suggest that hif-αs, nNOS and igfbp-1 transcripts and PC contents …

Impact Of The Capillary Pressure-Saturation Pore-Size Distribution Parameter On Geological Carbon Sequestration Estimates, Chu-Lin Cheng, Edmund Perfect, T. Edward Yu, Michael J. Gragg

School of Earth, Environmental, & Marine Sciences Faculty Publications

Cost estimates for geologic carbon sequestration (GCS) are vital for policy and decision makers evaluating carbon capture and storage strategies. Numerical models are often used in feasibility studies for the different stages of carbon injection and redistribution. Knowledge of the capillary pressure-saturation function for a selected storage rock unit is essential in applications used for simulating multiphase fluid flow and transport. However, the parameters describing these functions (e.g. the van Genuchten m pore size distribution parameter) are often not measured or neglected compared to other physical properties such as porosity and intrinsic permeability. In addition, the use of average …

Linear And Nonlinear Effects Of Temperature And Precipitation On Ecosystem Properties In Tidal Saline Wetlands, Laura C. Feher, Michael J. Osland, Kereen T. Griffith, James B. Grace, Rebecca J. Howard, Camille L. Stagg, Nicholas M. Enwright, Ken W. Krauss, Christopher A. Gabler, Richard H. Day, Kerrylee Rogers

School of Earth, Environmental, & Marine Sciences Faculty Publications

Climate greatly influences the structure and functioning of tidal saline wetland ecosystems. However, there is a need to better quantify the effects of climatic drivers on ecosystem properties, particularly near climate‐sensitive ecological transition zones. Here, we used climate‐ and literature‐derived ecological data from tidal saline wetlands to test hypotheses regarding the influence of climatic drivers (i.e., temperature and precipitation regimes) on the following six ecosystem properties: canopy height, biomass, productivity, decomposition, soil carbon density, and soil carbon accumulation. Our analyses quantify and elucidate linear and nonlinear effects of climatic drivers. We quantified positive linear relationships between temperature and above‐ground productivity …

Watershed Modeling And Sediment Yield Prediction Of The Los Olmos Creek Watershed In South Texas, Rockford Miller, Jungseok Ho, Chu-Lin Cheng

School of Earth, Environmental, & Marine Sciences Faculty Publications

Studying the sediment that accumulates in a stream is an important aspect in the study of water quality and resources. With respect to water quality, the main issue is the turbidity of the water. Increased losses of natural landscape increase the erosion process in turn raising the turbidity of the water and reducing the light that can penetrate to the water reducing the growth of aquatic life. With respect to water resources, sediment accumulates in the river ways, harbors, and in dams reducing the effectiveness of these resources. This study focused on determining the amount of sediment that is outputted …

Adsorptive And Kinetic Characterization Of Aqueous Zinc Removal By Biochars, Sergio Mireles, Yongsik Ok, Chu-Lin Cheng, James Jihoon Kang

School of Earth, Environmental, & Marine Sciences Faculty Publications

Biochars have shown a great potential to treat stormwater runoff contaminated with heavy metals due to their favorable physical and chemical characteristics. Biochar materials were produced from pyrolysis of oak tree and wood at 400C and 450C respectively, and their Zn adsorption behavior from aqueous solutions were evaluated to assess their applicability as a filter media for stormwater treatment. Two adsorption isotherm models, Freundlich and Langmuir, were used to fit the batch-scale experimental data. The kinetics of Zn adsorption was investigated under two contrasting physical condition (stagnant vs. agitated). The adsorption isotherm was better fitted with the Langmuir model (R2 …

Mapping Spatial Distribution And Biomass Of Coastal Wetland Vegetation In Indonesian Papua By Combining Active And Passive Remotely Sensed Data, Aslan Aslan, Abdullah Rahman, Matthew W. Warren, Scott M. Robeson

School of Earth, Environmental, & Marine Sciences Faculty Publications

There is ongoing interest to develop remote sensing methods for mapping and monitoring the spatial distribution and biomass of mangroves. In this study, we develop a suite of methods to evaluate the combination of Landsat-8, ALOS PALSAR, and SRTM data for mapping spatial distribution of mangrove composition, canopy height, and aboveground biomass in the wide intertidal zones and coastal plains of Mimika district, Papua, Indonesia. Image segmentation followed by visual interpretation of composite PALSAR images was used to delineate mangrove areas, whereas a flexible statistical rule based classification of spectral signatures from Landsat-8 images was used to classify mangrove associations. …

Molecular Comparison Of Cattle Fever Ticks From Native And Introduced Ranges, With Insights Into Optimal Search Areas For Classical Biological Control Agents, John A. Goolsby, F. D. Guerrero, John F. Gaskin, K. G. Bendele, P. Azhahianambi, D. Amalin, M. Flores-Cruz, J. Kashefi, Alexis Racelis

School of Earth, Environmental, & Marine Sciences Faculty Publications

Cattle fever ticks, the southern cattle tick, Rhipicephalus microplus (Canestrini), and cattle tick, Rhipicephalus annulatus (Say), are livestock pests endemic to Mexico and invasive along the Texas-Mexico border. Resistance to acaricide, alternate wildlife hosts, and pathogenic landscape-forming weeds present challenges for sustainable eradication of this pest in the U.S. Classical biological control is being explored as a strategy to control cattle fever ticks, especially on alternate hosts such as nilgai antelope, Boselaphus tragocamelus (Pallas), and white-tailed deer, Odocoileus virginianus (Zimmermann). Molecular genetic tools were used to compare populations of cattle fever ticks from native and introduced ranges to provide insights …

The Late Quaternary Rio Grande Delta—A Distinctive, Underappreciated Geologic System, Thomas E. Ewing, Juan L. Gonzalez

School of Earth, Environmental, & Marine Sciences Faculty Publications

The delta of the Rio Grande/Rio Bravo in southernmost Texas and northern Tamaulipas is one of the major deltas of North America. Over 600,000 people live on the Holocene delta and river plain, and a million more on its Pleistocene ancestors, yet geo-logic knowledge is limited. Combining available geologic information with global satellite photography gives a balanced view of an important delta. The Holocene delta begins at a point west of San Benito, Texas, forming a classic eastward-opening delta. Over half of the delta lies south of the present Rio Grande drainage. The delta passes westward into a floodplain that …

Capillary Pressure – Saturation Relationships For Gas Shales Measured Using A Water Activity Meter, B. Donnelly, E. Perfect, L. D. Mckay, P. J. Lemiszki, V. H. Distefano, L. M. Anovitz, J. Mcfarlane, R. E. Hale, Chu-Lin Cheng

School of Earth, Environmental, & Marine Sciences Faculty Publications

Hydraulic fracturing of gas shale formations involves pumping a large volume of fracking fluid into a hydrocarbon reservoir to fracture the rock and thus increase its permeability. The majority of the fracking fluid introduced is never recovered and the fate of this lost fluid, often called “leak off,” has become the source of much debate. Information on the capillary pressure – saturation relationship for each wetting phase is needed to simulate leak off using numerical reservoir models. The petroleum industry commonly employs air – water capillary pressure – saturation curves to predict these relationships for mixed wet reservoirs. Traditional methods …

Assessment Of Indoor And Outdoor Pm Species At Schools And Residences In A High-Altitude Ecuadorian Urban Center, Amit U. Raysoni, Rodrigo X. Armijos, M. Margaret Weigel, Teresa Montoya, Patricia Eschanique, Marcia Racines, Wen-Whai Li

School of Earth, Environmental, & Marine Sciences Faculty Publications

An air monitoring campaign to assess children’s environmental exposures in schools and residences, both indoors and outdoors, was conducted in 2010 in three low-income neighborhoods in Z1(north), Z2(central), and Z3(southeast) zones of Quito, Ecuador - a major urban center of 2.2 million inhabitants situated 2850 meters above sea level in a narrow mountainous basin. Z1 zone, located in northern Quito, historically experienced emissions from quarries and moderate traffic. Z2 zone was influenced by heavy traffic in contrast to Z3 zone which experienced low traffic densities. Weekly averages of PM samples were collected at schools (one in each zone) and residences …

Do Some Deep‐Sea, Sediment‐Dwelling Species Of Harpacticoid Copepods Have 1000‐Km‐Scale Range Sizes?, Erin E. Easton, David Thistle

School of Earth, Environmental, & Marine Sciences Faculty Publications

The range sizes of sediment‐dwelling deep‐sea species are largely unknown. Such knowledge is important because a deep sea composed in large part of species with 100‐km‐scale ranges would be very different from one composed predominantly of species with 1000‐km‐scale ranges. For example, the total species richness would be much greater in the first case than in the second. As a step towards the determination of the distribution of species’ range sizes in the deep sea, we asked whether harpacticoid copepods (Crustacea) on the continental rise in the northeastern Pacific had 1000‐km‐scale range sizes. We chose harpacticoids because they occur widely …

Potential And Timescales For Oxygen Depletion In Coastal Upwelling Systems: A Box-Model Analysis, Cheryl S. Harrison, B. Hales, S. Siedlecki, R. M. Samelson

School of Earth, Environmental, & Marine Sciences Faculty Publications

A simple box model is used to examine oxygen depletion in an idealized ocean-margin upwelling system. Near-bottom oxygen depletion is controlled by a competition between flushing with oxygenated offshore source waters and respiration of particulate organic matter produced near the surface and retained near the bottom. Upwelling-supplied nutrients are consumed in the surface box, and some surface particles sink to the bottom where they respire, consuming oxygen. Steady states characterize the potential for hypoxic near-bottom oxygen depletion; this potential is greatest for faster sinking rates, and largely independent of production timescales except in that faster production allows faster sinking. Timescales …

Carbon Abatement And Emissions Associated With The Gasification Of Walnut Shells For Bioenergy And Biochar Production, Engil Isadora Pujol Pereira, Emma C. Suddick, Johan Six

School of Earth, Environmental, & Marine Sciences Faculty Publications

By converting biomass residue to biochar, we could generate power cleanly and sequester carbon resulting in overall greenhouse gas emissions (GHG) savings when compared to typical fossil fuel usage and waste disposal. We estimated the carbon dioxide (CO2) abatements and emissions associated to the concurrent production of bioenergy and biochar through biomass gasification in an organic walnut farm and processing facility in California, USA. We accounted for (i) avoided-CO2 emissions from displaced grid electricity by bioenergy; (ii) CO2 emissions from farm machinery used for soil amendment of biochar; (iii) CO2 sequestered in the soil through stable biochar-C; and (iv) direct …

Comparative Analysis Of Xenorhabdus Koppenhoeferi Gene Expression During Symbiotic Persistence In The Host Nematode, Ruisheng An, Parwinder Grewal

School of Earth, Environmental, & Marine Sciences Faculty Publications

Species of Xenorhabdus and Photorhabdus bacteria form mutualistic associations with Steinernema and Heterorhabditis nematodes, respectively and serve as model systems for studying microbe-animal symbioses. Here, we profiled gene expression of Xenorhabdus koppenhoeferi during their symbiotic persistence in the newly formed infective juveniles of the host nematode Steinernema scarabaei through the selective capture of transcribed sequences (SCOTS). The obtained gene expression profile was then compared with other nematode-bacteria partnerships represented by Steinernema carpocapsae-Xenorhabdus nematophila and Heterorhabditis bacteriophora-Photorhabdus temperata. A total of 29 distinct genes were identified to be up-regulated and 53 were down-regulated in X. koppenhoeferi while in S. scarabaei infective …

Beyond Just Sea-Level Rise: Considering Macroclimatic Drivers Within Coastal Wetland Vulnerability Assessments To Climate Change, Michael J. Osland, Nicholas M. Enwright, Richard H. Day, Christopher A. Gabler, Camille L. Stagg, James B. Grace

School of Earth, Environmental, & Marine Sciences Faculty Publications

Due to their position at the land-sea interface, coastal wetlands are vulnerable to many aspects of climate change. However, climate change vulnerability assessments for coastal wetlands generally focus solely on sea-level rise without considering the effects of other facets of climate change. Across the globe and in all ecosystems, macroclimatic drivers (e.g., temperature and rainfall regimes) greatly influence ecosystem structure and function. Macroclimatic drivers have been the focus of climate change-related threat evaluations for terrestrial ecosystems, but largely ignored for coastal wetlands. In some coastal wetlands, changing macroclimatic conditions are expected to result in foundation plant species replacement, which would …

Mitigating N2o Emissions From Soil: From Patching Leaks To Transformative Action, C. Decock, Juhwan Lee, M. Necpalova, Engil Isadora Pujol Pereira, D. M. Tendall, Johan Six

School of Earth, Environmental, & Marine Sciences Faculty Publications

Further progress in understanding and mitigating N2O emissions from soil lies within transdisciplinary research that reaches across spatial scales and takes an ambitious look into the future.

Genomic And Transcriptomic Evidence For Scavenging Of Diverse Organic Compounds By Widespread Deep-Sea Archaea, Meng Li, Brett J. Baker, Karthik Anantharaman, Sunit Jain, John A. Breier, Gregory J. Dick

School of Earth, Environmental, & Marine Sciences Faculty Publications

Microbial activity is one of the most important processes to mediate the flux of organic carbon from the ocean surface to the seafloor. However, little is known about the microorganisms that underpin this key step of the global carbon cycle in the deep oceans. Here we present genomic and transcriptomic evidence that five ubiquitous archaeal groups actively use proteins, carbohydrates, fatty acids and lipids as sources of carbon and energy at depths ranging from 800 to 4,950 m in hydrothermal vent plumes and pelagic background seawater across three different ocean basins. Genome-enabled metabolic reconstructions and gene expression patterns show that …

Using Fish Population Metrics To Compare The Effects Of Artificial Reef Density, Catheline Y. M. Froehlich, Richard Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

Artificial reefs continue to be added as habitat throughout the world, yet questions remain about how reef design affects fish diversity and abundance. In the present study, the effects of reef density were assessed for fish communities and sizes of economically valuable Lutjanus campechanus 13 km off Port Mansfield, Texas, at a reef composed of more than 4000 concrete culverts. The study spanned from May to June in 2013 and 2014, and sites sampled included natural reefs, bare areas, and varying culvert patch density categories, ranging from 1–190 culverts. Abundances of adults and species evenness of juvenile populations differed between …

Particle Dynamics In The Rising Plume At Piccard Hydrothermal Field, Mid-Cayman Rise, Margaret L. Estapa, John A. Breier, Chris R. German

School of Earth, Environmental, & Marine Sciences Faculty Publications

Processes active in rising hydrothermal plumes, such as precipitation, particle aggregation, and biological growth, affect particle size distributions and can exert important influences on the biogeochemical impact of submarine venting of iron to the oceans and their sediments. However, observations to date of particle size distribution within these systems are both limited and conflicting. In a novel buoyant hydrothermal plume study at the recently discovered high-temperature (3988C) Piccard Hydrothermal Field, Mid- Cayman Rise, we report optical measurements of particle size distributions (PSDs). We describe the plume PSD in terms of a simple, power-law model commonly used in studies of upper …

Iron-Mediated Stabilization Of Soil Carbon Amplifies The Benefits Of Ecological Restoration In Degraded Lands, Lucas C. R. Silva, Timothy A. Doane, Rodrigo S. Correa, Vinicius Valverde, Engil Isadora Pujol Pereira, William R. Horwath

School of Earth, Environmental, & Marine Sciences Faculty Publications

Recent observations across a 14‐year restoration chronosequence have shown an unexpected accumulation of soil organic carbon in strip‐mined areas of central Brazil. This was attributed to the rapid plant colonization that followed the incorporation of biosolids into exposed regoliths, but the specific mechanisms involved in the stabilization of carbon inputs from the vegetation remained unclear. Using isotopic and elemental analyses, we tested the hypothesis that plant‐derived carbon accumulation was triggered by the formation of iron‐coordinated complexes, stabilized into physically protected (occluded) soil fractions. Confirming this hypothesis, we identified a fast formation of microaggregates shortly after the application of iron‐rich biosolids, …

Modification Of Traffic-Related Respiratory Response By Asthma Control In A Population Of Car Commuters, Maria C. Mirabelli, Rachel Golan, Roby Greenwald, Amit U. Raysoni, Fernando Holguin, Priya Kewada, Andrea Winquist, W Dana Flanders, Jeremy A. Sarnat

School of Earth, Environmental, & Marine Sciences Faculty Publications

Background: Effects of traffic-related exposures on respiratory health are well documented, but little information is available about whether asthma control influences individual susceptibility. We analyzed data from the Atlanta Commuter Exposure study to evaluate modification of associations between rush-hour commuting, in- vehicle air pollution, and selected respiratory health outcomes by asthma control status.

Methods: Between 2009 and 2011, 39 adults participated in Atlanta Commuter Exposure, and each conducted two scripted rush-hour highway commutes. In-vehicle particulate components were measured during all commutes. Among adults with asthma, we evaluated asthma control by questionnaire and spirometry. Exhaled nitric oxide, forced expiratory volume in …

Lateral Dispersal And Foraging Behavior Of Entomopathogenic Nematodes In The Absence And Presence Of Mobile And Non-Mobile Hosts, Harit K. Bal, Parwinder Grewal

School of Earth, Environmental, & Marine Sciences Faculty Publications

Entomopathogenic nematodes have been classified into cruisers (active searchers) and ambushers (sit and wait foragers). However, little is known about their dispersal and foraging behavior at population level in soil. We studied lateral dispersal of the ambush foraging Steinernema carpocapsae (ALL strain) and cruise foraging Heterorhabditis bacteriophora (GPS11 strain) from infected host cadavers in microcosms (0.05 m2) containing Wooster silt-loam soil (Oxyaquic fragiudalf) and vegetation in the presence or absence of non-mobile and mobile hosts. Results showed that the presence of a non-mobile host (Galleria mellonella larva in a wire mesh cage) enhanced H. bacteriophora dispersal for up …

Changes In Spatial Patterns Of Caragana Stenophylla Along A Climatic Drought Gradient On The Inner Mongolian Plateau, Li-Na Xie, Hong-Yu Guo, Christopher A. Gabler, Qing-Fang Li, Cheng-Cang Ma

School of Earth, Environmental, & Marine Sciences Faculty Publications

Few studies have investigated the influence of water availability on plant population spatial patterns. We studied changes in the spatial patterns of Caragana stenophylla along a climatic drought gradient within the Inner Mongolian Plateau, China. We examined spatial patterns, seed density, “nurse effects” of shrubs on seedlings, transpiration rates and water use efficiency (WUE) of C. stenophylla across semi-arid, arid, and intensively arid zones. Our results showed that patches of C. stenophylla populations shifted from a random to a clumped spatial pattern towards drier environments. Seed density and seedling survival rate of C. stenophylla decreased from the semi-arid zone to …

Microbial Iron Mats At The Mid-Atlantic Ridge And Evidence That Zetaproteobacteria May Be Restricted To Iron-Oxidizing Marine Systems, Jarrod J. Scott, John A. Breier, George W. Luther Iii, David Emerson

School of Earth, Environmental, & Marine Sciences Faculty Publications

Chemolithoautotrophic iron-oxidizing bacteria play an essential role in the global iron cycle. Thus far, the majority of marine iron-oxidizing bacteria have been identified as Zetaproteobacteria, a novel class within the phylum Proteobacteria. Marine iron-oxidizing microbial communities have been found associated with volcanically active seamounts, crustal spreading centers, and coastal waters. However, little is known about the presence and diversity of iron-oxidizing communities at hydrothermal systems along the slow crustal spreading center of the Mid-Atlantic Ridge. From October to November 2012, samples were collected from rust-colored mats at three well-known hydrothermal vent systems on the Mid-Atlantic Ridge (Rainbow, Trans-Atlantic Geotraverse, and …

Rapid Imbibition Of Water In Fractures Within Unsaturated Sedimentary Rock, Chu-Lin Cheng, E. Perfect, B. Donnelly, H. Z. Bilheux, A. S. Tremsin, L. D. Mckay, V. H. Distefano, J. C. Cai, L. J. Santodonato

School of Earth, Environmental, & Marine Sciences Faculty Publications

The spontaneous imbibition of water and other liquids into gas-filled fractures in variably-saturated porous media is important in a variety of engineering and geological contexts. However, surprisingly few studies have investigated this phenomenon. We present a theoretical framework for predicting the 1-dimensional movement of water into air-filled fractures within a porous medium based on early-time capillary dynamics and spreading over the rough surfaces of fracture faces. The theory permits estimation of sorptivity values for the matrix and fracture zone, as well as a dispersion parameter which quantifies the extent of spreading of the wetting front. Quantitative data on spontaneous imbibition …

Octocoral Mitochondrial Genomes Provide Insights Into The Phylogenetic History Of Gene Order Rearrangements, Order Reversals, And Cnidarian Phylogenetics, Diego F. Figueroa, Amy R. Baco

School of Earth, Environmental, & Marine Sciences Faculty Publications

We use full mitochondrial genomes to test the robustness of the phylogeny of the Octocorallia, to determine the evolutionary pathway for the five known mitochondrial gene rearrangements in octocorals, and to test the suitability of using mitochondrial genomes for higher taxonomic-level phylogenetic reconstructions. Our phylogeny supports three major divisions within the Octocorallia and show that Paragorgiidae is paraphyletic, with Sibogagorgia forming a sister branch to the Coralliidae. Furthermore, Sibogagorgia cauliflora has what is presumed to be the ancestral gene order in octocorals, but the presence of a pair of inverted repeat sequences suggest that this gene order was not conserved …