Earth Sciences Commons^™

Predicting Patterns Of Heavy Metal Contamination In Rio Grande Valley Agricultural Soils, Joy Z. Youwakim

Theses and Dissertations

The Rio Grande Valley of Texas is the statewide leader in the production of produce and grains and is irrigated by the Rio Grande River, in which heavy metal contaminants have been documented by both the International Boundary Water Commission and the United States Geological Survey. This work attempts to observe and document patterns of heavy metal pooling in order to mitigate the increased risk of contamination due to urbanization. We hypothesize that relationships exist between heavy metal content and proximity to roads, land use, and soil type. This research tests these relationships through soil sampling and atomic absorption spectrometry …

The Application Of Advanced Technologies For Agriculture And Rangeland Management, Matthew D. Kutugata

Theses and Dissertations

This project demonstrates two applications of remote sensing in agricultural and rangeland environments. In the first, an unmanned aerial system (UAS) equipped with a multi-spectral sensor was used to estimate canopy cover across four different cover crop trials at four time periods. In the second, a local database of stationary camera trap images of wildlife was used to train a convolutional neural network to automatically catalogue images by identifying the animal in those images. Both projects aimed to provide an example of how remote sensing platforms and machine learning techniques can facilitate the rapid collection and processing of large-scale field …

Influence Of Landscape Factors On Wildlife Presence And Road Mitigation Structure Performance, Taylor M. Hopkins

Theses and Dissertations

There are roughly 80 ocelots (Leopardus pardalis) remaining in the United States, with the entire population constrained to south Texas, with roadkill being a predominant source of mortality. To prevent additional roadkill and maintain wildlife movement, Texas Department of Transportation constructed 11.9 kilometers of wildlife exclusion fencing, 5 wildlife crossing structures (WCS), and 18 wildlife guards on State Highway 100. This thesis focused on determining the effort required for a control-impact monitoring study, the influence of biotic and abiotic factors around the roadway on wildlife presence, and the performance of mitigation structures and the road mitigation corridor. This …

Reaching 1.5 And 2.0 ◦C Global Surface Temperature Targets Using Stratospheric Aerosol Geoengineering, Simone Tilmes, Douglas G. Macmartin, Jan T. M. Lenaerts, Leo Van Kampenhout, Laura Muntjewerf, Lili Xia, Cheryl S. Harrison, Kristen M. Krumhardt, Michael J. Mills, Ben Kravitz, Alan Robock

School of Earth, Environmental, & Marine Sciences Faculty Publications

A new set of stratospheric aerosol geoengineering (SAG) model experiments has been performed with Community Earth System Model version 2 (CESM2) with the Whole Atmosphere Community Climate Model (WACCM6) that are based on the Coupled Model Intercomparison Project phase 6 (CMIP6) overshoot scenario (SSP5-34-OS) as a baseline scenario to limit global warming to 1.5 or 2.0 ◦C above 1850–1900 conditions. The overshoot scenario allows us to applying a peak-shaving scenario that reduces the needed duration and amount of SAG application compared to a high forcing scenario. In addition, a feedback algorithm identifies the needed amount of sulfur dioxide injections in …

The Influence Of Human Disturbance On Wildlife Use Of A Highway In South Texas, Thomas J. Yamashita

Theses and Dissertations

Roads can greatly impact wildlife. Wildlife vehicle collisions contribute to population declines while disturbance from human activity may prevent wildlife from using areas around roads. The construction of mitigation structures may lessen these effects through fine scale modification of animal use of roadside areas. In this thesis, how the construction of wildlife mitigation structures impacted the fine scale distribution of wildlife on State Highway 100 in Cameron County, Texas was examined. Spatial and temporal scale may also influence these relationships. The relationship between human activity and wildlife activity around the highway was explored and how the distribution of wildlife road …

Analysis Of The Facilitative Interaction Between Batis Maritima And Avicennia Germinans As A Mangrove Restoration Strategy, Javier R. Navarro

Theses and Dissertations

The multiple experiments conducted in an Avicennia germinans forest in Laguna Vista, TX was focused on determining if facilitation theory could explain the behavior observed between the herbaceous halophyte Batis maritima and A. germinans. I hypnotized that a positive interaction exists but through which mechanisms of facilitation I did not know. The overarching theme of the study is the presence or absence of B. maritima. Facilitation theory tells us that positive interactions are most often found under stressful conditions such as those on the coastal tidal flat of the Laguna Madre. Locally B. maritima has been found to …

Overexpression Of Strigolactone-Associated Genes Exerts Fine-Tuning Selection On Soybean Rhizosphere Bacterial And Fungal Microbiome, Fang Liu, John Hollis Rice, Valeria Lopes, Parwinder Grewal, Sarah L. Lebeis, Tarek Hewezi, Margaret E. Staton

School of Earth, Environmental, & Marine Sciences Faculty Publications

Strigolactones are a recently discovered class of carotenoid-derived plant hormones with a wide variety of functions, including acting as signaling molecules in the rhizosphere to promote arbuscular mycorrhizal fungi colonization and parasitic seed germination. To determine whether strigolactones influence the recruitment of microbes to the rhizosphere, we characterized both bacterial and fungal communities in response to the overexpression of genes involved in strigolactone biosynthesis (MAX1d) and signaling perception (D14 and MAX2a) in soybean (Glycine max). The amplicon sequencing-based results suggest that strigolactone overexpression lines had altered soybean rhizosphere bacteria composition at both the community …

Benchmarking And Parameter Sensitivity Of Physiological And Vegetation Dynamics Using The Functionally Assembled Terrestrial Ecosystem Simulator (Fates) At Barro Colorado Island, Panama, Charles D. Koven, Ryan G. Knox, Rosie A. Fisher, Jeffrey Q. Chambers, Bradley O. Christoffersen, Stuart J. Davies, Matteo Detto

School of Earth, Environmental, & Marine Sciences Faculty Publications

Plant functional traits determine vegetation responses to environmental variation, but variation in trait values is large, even within a single site. Likewise, uncertainty in how these traits map to Earth system feedbacks is large. We use a vegetation demographic model (VDM), the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), to explore parameter sensitivity of model predictions, and comparison to observations, at a tropical forest site: Barro Colorado Island in Panama. We define a single 12-dimensional distribution of plant trait variation, derived primarily from observations in Panama, and define plant functional types (PFTs) as random draws from this distribution. We compare several …

Potential Predictability Of Net Primary Production In The Ocean, Kristen M. Krumhardt, Nicole S. Lovenduski, Matthew C. Long, J. Y. Luo, K. Lindsay, S. Yeager, Cheryl S. Harrison

School of Earth, Environmental, & Marine Sciences Faculty Publications

Interannual variations in marine net primary production (NPP) contribute to the variability of available living marine resources, as well as influence critical carbon cycle processes. Here we provide a global overview of near-term (1 to 10 years) potential predictability of marine NPP using a novel set of initialized retrospective decadal forecasts from an Earth System Model. Interannual variations in marine NPP are potentially predictable in many areas of the ocean 1 to 3 years in advance, from temperate waters to the tropics, showing a substantial improvement over a simple persistence forecast. However, some regions, such as the subpolar Southern Ocean, …

Effect Of Pecan Variety And The Method Of Extraction On The Antimicrobial Activity Of Pecan Shell Extracts Against Different Foodborne Pathogens And Their Efficacy On Food Matrices, Veerachandra K. Yemmireddy, Cameron Cason, Juan Moreira, Achyut Adhikari

School of Earth, Environmental, & Marine Sciences Faculty Publications

The shells of pecans are a rich source of bioactive compounds with potential inhibitory activity against various pathogenic microorganisms. This study investigated the antimicrobial activity of pecan shell extracts as effected by the type of cultivar and the method of extraction against various foodborne bacterial pathogens. Defatted shell powders of 19 different pecan cultivars were subjected to aqueous and ethanolic extraction (1:20 w/v) procedures, respectively. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of lyophilized pecan shell extracts dissolved in deionized water containing 5% DMSO (v/v) were determined against multiple strains of Listeria monocytogenes, Salmonella enterica, and …

Categorizing Zonal Productivity On The Continental Shelf With Nutrient-Salinity Ratios, Jongsun Kim, Piers Chapman, Gilbert Rowe, Steven F. Dimarco

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

• Identifying riverine influence on productivity in the northern Gulf of Mexico
• Use of nutrient/salinity plots to differentiate inputs from two rivers
• Verifying Rowe-Chapman (2002) hypothesis with in situ data

Abstract

Coastal ocean productivity is often dependent on riverine sources of nutrients, yet it can be difficult to determine how far the influence of the river extends. The northern Gulf of Mexico (GOM) receives freshwater and nutrients discharged mainly from the Mississippi and Atchafalaya Rivers. We used nutrient/salinity relationships to (i) differentiate the nutrient inputs of the two rivers and (ii) determine the potential extent of the zones where productivity …

A New Species Of Chromis (Teleostei: Pomacentridae) From Mesophotic Coral Ecosystems Of Rapa Nui (Easter Island) And Salas Y Gomez, Chile, Bart Shepard, Hudson T. Pinheiro, Tyler A. Y. Phelps, Erin E. Easton, Alejandro Perez-Matus, Luiz A. Rocha

School of Earth, Environmental, & Marine Sciences Faculty Publications

A new species of Chromis (Teleostei: Pomacentridae) is described from three specimens collected at 90 m depth in a mesophotic coral ecosystem at Rapa Nui, Chile. Chromis mamatapara, new species, can be distinguished from its congeners by the following combination of characters: dorsal-fin rays XIV,13–14; pectoral-fin rays 18–19, third from top of fin longest; tubed lateral-line scales 18; total gill rakers on first arch 30–32; vertebrae 11þ15; and by coloration of living specimens, especially the presence of a single, pronounced, white spot, roughly the same diameter as the orbit, located where the posterior base of the dorsal fin intersects the …

The Pantropical Response Of Soil Moisture To El Niño, Kurt C. Solander, Brent D. Newman, Alessandro Carloca De Araujo, Holly R. Barnard, Z. Carter Berry, Damien Bonal, Mario Bretfeld, Benoit Burban, Luiz Antonio Candido, Rolando Celleri, Jeffery Q. Chambers, Bradley O. Christoffersen

School of Earth, Environmental, & Marine Sciences Faculty Publications

The 2015–2016 El Niño event ranks as one of the most severe on record in terms of the magnitude and extent of sea surface temperature (SST) anomalies generated in the tropical Pacific Ocean. Corresponding global impacts on the climate were expected to rival, or even surpass, those of the 1997–1998 severe El Niño event, which had SST anomalies that were similar in size. However, the 2015–2016 event failed to meet expectations for hydrologic change in many areas, including those expected to receive well above normal precipitation. To better understand how climate anomalies during an El Niño event impact soil moisture, …

Wildlife Use Of Road Mitigation Structures In Relation To Their Construction, Structural Characteristics, And Environmental Factors Along A South Texas Highway, Anna D. Rivera Roy

Theses and Dissertations

Roads are known to negatively impact wildlife by fragmenting habitat and mortality caused by wildlife-vehicle collisions. Road mitigation structures, such as wildlife crossing structures (WCS), wildlife guards (WG), and fencing are commonly used to address the issue of roads. In South Texas, such structures were built or modified along State Highway (SH) 100 in Cameron County as an effort to conserve the endangered ocelot (Leopardus pardalis). Camera traps were deployed to monitor these structures as a way to assess their effectiveness in restricting wildlife entry into the roadway with fencing and WG and conveying wildlife movement across roads …

Detection And Enumeration Of Bacterial Pathogens In The American Oyster (Crassostrea Virginica), Mohammad Maruf Billah

Theses and Dissertations

American oyster (Crassostrea virginica) is a popular seafood for its delicacy and high nutritional value. Based on increasing concern about contamination of bacterial pathogens in raw oyster, my research objectives have been focused on detection and enumeration of two important bacterial pathogens, Escherichia coli and Salmonella spp. in the American oyster in south Texas waters, local markets and controlled laboratory studies. Immunohistochemical and RT-PCR analyses showed substantial bacterial pathogen’s presence in gills and digestive glands of oysters collected from San Martin Lake and South Padre Island as well as local markets. Laboratory studies showed increasing trend of both …

Effects Of Arbuscular Mycorrhizal Fungi (Amf) On Growth And Herbivore Defenses In Sorghum Sudangrass (Sorghum X Drummondii), Jasleen Kaur

Theses and Dissertations

Chapter 2: In this chapter we have examined the role of trichomes in plant stress biology, reviewed the studies on herbivore X trichome interactions, and their role in plant defences. Ultimately, we have proposed new areas of research for future work.

Chapter 3: In this chapter, we examined whether AMF has cascading effects on insect community dynamics through attraction/repulsion of beneficial and damaging insects using Sorghum-sudangrass (Sorghum x drummondii), either inoculated with commercial AMF mix or left as control in lab and field experiments. Our results suggest positive effects of AMF on plant growth, and a lower initial incidence of …

Tipping Points Of Mississippi Delta Marshes Due To Accelerated Sea-Level Rise, Torbjörn E. Törnqvist, Krista L. Jankowski, Yong-Xiang Li, Juan L. Gonzalez

School of Earth, Environmental, & Marine Sciences Faculty Publications

Coastal marshes are threatened by relative sea-level (RSL) rise, yet recent studies predict marsh survival even under the high rates of RSL rise expected later in this century. However, because these studies are mostly based on short-term records, uncertainty persists about the longer-term vulnerability of coastal marshes. We present an 8500-year-long marsh record from the Mississippi Delta, showing that at rates of RSL rise exceeding 6 to 9 mm year−1, marsh conversion into open water occurs in about 50 years. At rates of RSL rise exceeding ~3 mm year−1, marsh drowning occurs within a few centuries. Because present-day rates of …

Survival Of Off-Host Rhipicephalus (Boophilus) Annulatus (Acari: Ixodidae) Larvae In Study Arenas In Relation To Climatic Factors And Habitats In South Texas, Usa, Emily Jesselle Zamora

Theses and Dissertations

The cattle fever tick, Rhipicephalus (Boophilus) annulatus (Say), is an economically destructive arthropod because of its ability to vector bovine babesiosis. Cattle fever ticks can spend more than 90% of their life cycle as questing larvae, but the effect of climatic factors on their off-host behavior and survival is unclear. The goal of this study was to measure the effects of specific ecological factors on off-host larvae in nature. The study was conducted in a south Texas pasture over a 20-mo period, during which time larval populations were surveyed and ambient weather variables - relative humidity and temperatures – were …

Complete Mitochondrial Genome Of Carijoa Riisei (Duchassaing & Michelotti, 1860) (Octocorallia: Alcyonacea: Stolonifera: Clavulariidae), Erin E. Easton, David Hicks

School of Earth, Environmental, & Marine Sciences Faculty Publications

We report the first complete Stolonifera mitochondrial genome. Carijoa riisei (Duchassaing & Michelotti, 1860) isolate CLP2_A03 was collected by scuba at 32 m on the USTS Texas Clipper (27° 53.7827′N, 93° 36.2702′W). The complete mitogenome has the ancestral octocoral gene order for its 14 protein-coding genes, two rRNA genes, and one tRNA gene. It is 18,714 bp (30.7% A, 15.8% C, 18.8% G, and 34.7% T). Of the Alcyonacea mitogenomes published to date, it is most genetically similar (94% uncorrected) to Sinularia ceramensis Verseveldt, 1977 (NC_044122).

The Simulated Biological Response To Southern Ocean Eddies Via Biological Rate Modification And Physical Transport, Tyler Rohr, Cheryl S. Harrison, Matthew C. Long, Peter Gaube, Scott C. Doney

School of Earth, Environmental, & Marine Sciences Faculty Publications

We examine the structure and drivers of anomalous phytoplankton biomass in Southern Ocean eddies tracked in a global, multiyear, eddy-resolving, 3-D ocean simulation of the Community Earth System Model.We examine how simulated anticyclones and cyclones differentially modify phytoplankton biomass concentrations, growth rates, and physical transport. On average, cyclones induce negative division rate anomalies that drive negative net population growth rate anomalies, reduce dilution across shallower mixed layers, and advect biomass anomalously downward via eddy-induced Ekman pumping. The opposite is true in anticyclones. Lateral transport is dominated by eddy stirring rather than eddy trapping. The net effect on anomalous biomass can …

Eddy-Modified Iron, Light, And Phytoplankton Cell Division Rates In The Simulated Southern Ocean, Tyler Rohr, Cheryl S. Harrison, Matthew C. Long, Peter Gaube, Scott C. Doney

School of Earth, Environmental, & Marine Sciences Faculty Publications

We examine the effects of Southern Ocean eddies on phytoplankton cell division rates in a global, multiyear, eddy‐resolving, 3‐D ocean simulation of the Community Earth System Model. We first identify and track eddies in the simulation and validate their distribution and demographics against observed eddy trajectory characteristics. Next, we examine how simulated cyclones and anticyclones differentially modify iron, light, and ultimately population‐specific cell division rates. We use an eddy‐centric, depth‐averaged framework to explicitly examine the dynamics of the phytoplankton population across the entire water column within an eddy. We find that population‐averaged iron availability is elevated in anticyclones throughout the …

Soil Biotic And Abiotic Conditions Negate Invasive Species Performance In Native Habitat, Pushpa Soti, Matthew Purcell, Krish Jayachandran

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Background: Most studies on plant invasion consider the enemy release hypothesis when analyzing native habitats. However, the lower performance of invasive species in the native habitats can be the result of unfavorable soil conditions in the native habitats. While soil biotic and abiotic factors have a potential to restrict the growth of invasive species in their native habitats, our understanding of belowground environment of invasive species in their native habitats is very limited. In this study, we analyzed soil characteristics associated with an exotic invasive plant, Old World Climbing Fern (Lygodium microphyllum), in its native habitat in Australia and the …

Phylogeography Of Acartia Tonsa Dana, 1849 (Calanoida: Copepoda) And Phylogenetic Reconstruction Of The Genus Acartia Dana, 1846, Nicole J. Figueroa, Diego F. Figueroa, David Hicks

School of Earth, Environmental, & Marine Sciences Faculty Publications

The calanoid copepod, Acartia tonsa Dana, 1849 is one of the most abundant and well-studied estuarian species with a worldwide distribution. In this research, we use the mitochondrial cytochrome oxidase subunit I gene to study the phylogeography of A. tonsa by analyzing sequences from specimens collected in the western Gulf of Mexico (GOM) along with all sequences from previous research. We reconstruct the phylogeny for the genus Acartia Dana, 1846 and highlight numerous potential misidentifications of Acartia species deposited in GenBank. The incorrect taxonomy assigned to some of these sequences results in apparently paraphyletic relationships. This study demonstrates that A. …

Application Of Acoustical Remote Sensing Techniques For Ecosystem Monitoring Of A Seagrass Meadow, Megan S. Ballard, Kevin M. Lee, Jason D. Sagers, Gabriel R. Venegas, Andrew R. Mcneese, Preston S. Wilson, Abdullah Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Seagrasses provide a multitude of ecosystem services and serve as important organic carbon stores. However, seagrass habitats are declining worldwide, threatened by global climate change and regional shifts in water quality. Acoustical methods have been applied to assess changes in oxygen production of seagrass meadows since sound propagation is sensitive to the presence of bubbles, which exist both within the plant tissue and freely floating the water as byproducts of photosynthesis. This work applies acoustic remote sensing techniques to characterize two different regions of a seagrass meadow: a densely vegetated meadow of Thalassia testudinum and a sandy region sparsely populated …

Subsea 2019 Expedition To The Gorda Ridge, Darlene S. S. Lim, Nicole A. Raineault, John A. Breier, Eric W. Chan, Josh Chernov, Tamar Cohen, Matthew Deans, Angela Garcia, Christopher R. German, Michelle Hauer

School of Earth, Environmental, & Marine Sciences Faculty Publications

The SUBSEA (Systematic Underwater Biogeochemical Science and Exploration Analog) program blends ocean exploration with “ocean worlds” research, along with NASA analog and work studies research, to address science, science operations, and technology knowledge gaps related to the exploration of our solar system. The science group researches venting fluids at isolated seamounts and spreading ridges in the Pacific Ocean as analog environments to putative volcanically hosted hydrothermal systems on other “ocean worlds” (defined as places in the outer solar system that could possess subsurface oceans). The science operations research group studies E/V Nautilus architecture, distributed teams, communication, and lowlatency telerobotics. The …

Implications Of Different Nitrogen Input Sources For Potential Production And Carbon Flux Estimates In The Coastal Gulf Of Mexico (Gom) And Korean Peninsula Coastal Waters, Jongsun Kim, Piers Chapman, Gilbert Rowe, Steven F. Dimarco, Daniel C. O. Thornton

School of Earth, Environmental, & Marine Sciences Faculty Publications

The coastal Gulf of Mexico (GOM) and coastal sea off the Korean Peninsula (CSK) both suffer from human-induced eutrophication. We used a nitrogen (N) mass balance model in two different regions with different nitrogen input sources to estimate organic carbon fluxes and predict future carbon fluxes under different model scenarios. The coastal GOM receives nitrogen predominantly from the Mississippi and Atchafalaya rivers and atmospheric nitrogen deposition is only a minor component in this region. In the CSK, groundwater and atmospheric nitrogen deposition are more important controlling factors. Our model includes the fluxes of nitrogen to the ocean from the atmosphere, …

Bacterial Community Dissimilarity In Soils Is Driven By Long-Termland-Use Practices, Aditi Sengupta, Janani Hariharan, Parwinder Grewal, Warren A. Dick

School of Earth, Environmental, & Marine Sciences Faculty Publications

Land‐use practices impact soil microbial functionality and biodiversity, with reports suggesting that anthropogenic activities potentially result in reduced microbial functions and loss of species. The objective of this study was to assess the effect of long‐term (>50 yr) land use (natural forest and grassland, and agricultural land) on soil bacterial community structure. A high‐throughput sequencing‐by‐synthesis approach of the 16S rRNA gene was used to study bacterial community and predicted functional profiles of Alfisols, as affected by variables including land‐use (forest, grass, agricultural) and soil/crop management (rotation and tillage) in long‐term experimental plots in Hoytville, OH. The distribution of the …

Architectonica Karsteni Rutsch, 1934 (Gastropoda: Architectonicidae) In Seamounts Of The Nazca-Desventuradas Marine Park: First Evidence Of An Extant Population In Chilean Waters Since The Miocene, Cynthia M. Asorey, Javier Sellanes, Erin E. Easton, Rüdiger Bieler, Ariadna Mecho

School of Earth, Environmental, & Marine Sciences Faculty Publications

The presence of Architectonicidae in Chile was previously recorded only from fossil material of eight species present during the Lower Miocene, when Architectonica karsteni had a geographic range that extended from Costa Rica to central Chile (34°S). No evidence of the presence of the family in Chile after the Lower Miocene have been reported. As part of this study, we report the discovery of A. karsteni at four seamountsat ~200 m water depth in the recently created Nazca-Desventuradas Marine Park, located ~900 km west of continental Chile. Morphological identification was based on protoconch diameter, coloration patterns, and teleoconch sculpture. We …

New County Records Of Amphibians And Reptiles From South Texas, Usa, Clinton J. Guadiana, Padraic S. Robinson, Matthew S. Schalk, Drew R. Davis

School of Earth, Environmental, & Marine Sciences Faculty Publications

Several species of amphibians and reptiles reach their northern range limit in south Texas, USA. Herpetological research in the area, as well as frequent visits from amphibian and reptile enthusiasts, have helped to form a more complete understanding of amphibian and reptile distributions across the region. However, gaps in the recognized distribution of many species remain. Efforts to better document species occurrence are confounded by the lack of public land and the fact that most of south Texas is privately owned, making access to suitable habitat difficult (Schmidly et al. 2001)

The International Joint Commission And Air Pollution: A Tale Of Two Cases, Owen Temby, Don Munton

School of Earth, Environmental, & Marine Sciences Faculty Publications

No abstract provided.