Earth Sciences Commons^™

Iac Gene Expression In The Indole-3-Acetic Acid-Degrading Soil Bacterium Enterobacter Soli Lf7, Isaac V. Greenhut, Beryl L. Slezak, Johan H. J. Leveau

Plant and Soil Sciences Faculty Publications

We show for soil bacterium Enterobacter soli LF7 that the possession of an indole-3-acetic acid catabolic (iac) gene cluster is causatively linked to the ability to utilize the plant hormone indole-3-acetic acid (IAA) as a carbon and energy source. Genome-wide transcriptional profiling by mRNA sequencing revealed that these iac genes, chromosomally arranged as iacHABICDEFG and coding for the transformation of IAA to catechol, were the most highly induced (>29-fold) among the relatively few (iac cluster were genes for a major facilitator superfamily protein (mfs) and enzymes of the β-ketoadipate pathway (pcaIJD-catBCA), which channels …

Biomass Production Of Herbaceous Energy Crops In The United States: Field Trial Results And Yield Potential Maps From The Multiyear Regional Feedstock Partnership, Do Kyoung Lee, Ezra Aberle, Erik K. Anderson, William Anderson, Brian S. Baldwin, David Baltensperger, Michael Barrett, Jürg Blumenthal, Stacy Bonos, Joe Bouton, David I. Bransby, Charlie Brummer, Pane S. Burks, Chengci Chen, Christopher Daly, Josh Egenolf, Rodney L. Farris, John H. Fike, Roch Gaussoin, John R. Gill, Kenneth Gravois, Michael D. Halbleib, Anna Hale, Wayne Hanna, Keith Harmoney, Emily A. Heaton, Ron W. Heiniger, Lindsey Hoffman, Chang O. Hong, Gopal Kakani, David Williams, Linda Williams

Plant and Soil Sciences Faculty Publications

Current knowledge of yield potential and best agronomic management practices for perennial bioenergy grasses is primarily derived from small‐scale and short‐term studies, yet these studies inform policy at the national scale. In an effort to learn more about how bioenergy grasses perform across multiple locations and years, the U.S. Department of Energy (US DOE)/Sun Grant Initiative Regional Feedstock Partnership was initiated in 2008. The objectives of the Feedstock Partnership were to (1) provide a wide range of information for feedstock selection (species choice) and management practice options for a variety of regions and (2) develop national maps of potential feedstock …

Sh-Mode Seismic-Reflection Imaging Of Earthfill Dams, Edward W. Woolery

Earth and Environmental Sciences Faculty Publications

Assessing subsurface characteristics and imaging geologic features (e.g., faults, cavities, low-velocity layers, etc.) are typical problems in near-surface geophysics. These questions often have adverse geotechnical engineering implications, and can be especially acute when associated with high-hazard structures such as large earthen flood-control dams. Dam-related issues are becoming more frequent in the United States, because a large part of this major infrastructure was designed and constructed in the early- to mid-twentieth century; these dams are thus passing into the latter stages of their design life, where minute flaws that were overlooked or thought to be insignificant in design/construction are now …

Lithologic Controls On Focused Erosion And Intraplate Earthquakes In The Eastern Tennessee Seismic Zone, Sean F. Gallen, J. Ryan Thigpen

Earth and Environmental Sciences Faculty Publications

We present a new geomorphic model for the intraplate eastern Tennessee seismic zone (ETSZ). Previous studies document that the Upper Tennessee drainage basin is in a transient state of adjustment to ~150 m of base level fall that occurred in the Late Miocene. Using quantitative geomorphology, we demonstrate that base level fall resulted in the erosion of ~3,500 km³ of highly erodibility rock in an ~70 km wide by ~350‐km‐long corridor in the Paleozoic fold‐thrust belt above the ETSZ. Models of modern incision rates show a NE‐SW trending swath of elevated erosion ~30 km southeast of the center of …

Ultrafine Mineral Associations In Superhigh-Organic-Sulfur Kentucky Coals, James C. Hower, Debora Berti, Michael F. Hochella Jr.

Center for Applied Energy Research Faculty and Staff Publications

Two high-organic-sulfur Kentucky coals, the eastern Kentucky River Gem coal and the western Kentucky Davis coal, are examined by scanning electron microscopy (SEM) and transmission electron microscopy (TEM), both including elemental analysis by energy-dispersive spectroscopy (EDS). From the SEM–EDS analysis, it is observed that the western Kentucky coal had areas with Pb and Cd in addition to the expected Fe and S and the eastern Kentucky coal had individual Fe–S-rich areas with La and Ni and with Si, Al, Cr, Ni, and Ti. TEM and selected area electron diffraction (SAED) analyses demonstrate that anglesite with a rim of Pb-bearing amorphous …

Structural Evolution And Petroleum Potential Of A Cambrian Intracratonic Rift System: Mississippi Valley Graben, Rough Creek Graben, And Rome Trough, John B. Hickman, David C. Harris

Report of Investigations--KGS

Drilling and geophysical data demonstrate that the Mississippi Valley Graben, Rough Creek Graben, and Rome Trough are fault-bounded structures filled with as much as 27,000 ft of Cambrian sediments. Data including stratigraphic tops from 1,764 wells, 106 seismic profiles, aeromagnetic and gravity surveys, and mapped surface geology at a scale of 1:24,000 were used to study seven stratigraphic packages across parts of Kentucky, Ohio, Indiana, Illinois, Missouri, and Tennessee. Detailed analysis of the thickness patterns of these stratigraphic packages was used to interpret the locations and timing of movement along major fault systems in the study area.

Active rifting of …

Phosphorus And Potassium Fertilizer Application Strategies In Corn–Soybean Rotations, Timothy J. Boring, Kurt D. Thelen, James E. Board, Jason L. De Bruin, Chad D. Lee, Seth L. Naeve, William J. Ross, Wade A. Kent, Landon L. Ries

Plant and Soil Sciences Faculty Publications

To determine if current university fertilizer rate and timing recommendations pose a limitation to high-yield corn (Zea mays subsp. mays) and soybean (Glycine max) production, this study compared annual Phosphorous (P) and Potassium (K) fertilizer applications to biennial fertilizer applications, applied at 1× and 2× recommended rates in corn–soybean rotations located in Minnesota (MN), Iowa (IA), Michigan (MI), Arkansas (AR), and Louisiana (LA). At locations with either soil test P or K in the sub-optimal range, corn grain yield was significantly increased with fertilizer application at five of sixteen site years, while soybean seed yield was significantly …

Engineered Nanoparticles Interact With Nutrients To Intensify Eutrophication In A Wetland Ecosystem Experiment, Marie Simonin, Benjamin P. Colman, Steven M. Anderson, Ryan S. King, Matthew T. Ruis, Astrid Avellan, Christina M. Bergemann, Brittany G. Perrotta, Nicholas K. Geitner, Mengchi Ho, Belen De La Barrera, Jason M. Unrine, Gregory V. Lowry, Curtis J. Richardson, Mark R. Wiesner, Emily S. Bernhardt

Plant and Soil Sciences Faculty Publications

Despite the rapid rise in diversity and quantities of engineered nanomaterials produced, the impacts of these emerging contaminants on the structure and function of ecosystems have received little attention from ecologists. Moreover, little is known about how manufactured nanomaterials may interact with nutrient pollution in altering ecosystem productivity, despite the recognition that eutrophication is the primary water quality issue in freshwater ecosystems worldwide. In this study, we asked two main questions: (1) To what extent do manufactured nanoparticles affect the biomass and productivity of primary producers in wetland ecosystems? (2) How are these impacts mediated by nutrient pollution? To address …

Characterization Of Mrna Polyadenylation In The Apicomplexa, Ashley T. Stevens, Daniel K. Howe, Arthur G. Hunt

Plant and Soil Sciences Faculty Publications

Messenger RNA polyadenylation is a universal aspect of gene expression in eukaryotes. In well-established model organisms, this process is mediated by a conserved complex of 15–20 subunits. To better understand this process in apicomplexans, a group of unicellular parasites that causes serious disease in humans and livestock, a computational and high throughput sequencing study of the polyadenylation complex and poly(A) sites in several species was conducted. BLAST-based searches for orthologs of the human polyadenylation complex yielded clear matches to only two—poly(A) polymerase and CPSF73—of the 19 proteins used as queries in this analysis. As the human subunits that recognize the …

Quantifying Plant Soluble Protein And Digestible Carbohydrate Content, Using Corn (Zea Mays) As An Exemplar, Carrie A. Deans, Gregory A. Sword, Paul A. Lenhart, Eric Burkness, William D. Hutchison, Spencer T. Behmer

Entomology Faculty Publications

Elemental data are commonly used to infer plant quality as a resource to herbivores. However, the ubiquity of carbon in biomolecules, the presence of nitrogen-containing plant defensive compounds, and variation in species-specific correlations between nitrogen and plant protein content all limit the accuracy of these inferences. Additionally, research focused on plant and/or herbivore physiology require a level of accuracy that is not achieved using generalized correlations. The methods presented here offer researchers a clear and rapid protocol for directly measuring plant soluble proteins and digestible carbohydrates, the two plant macronutrients most closely tied to animal physiological performance. The protocols combine …

Spatio-Temporal Variations Of Soil Active Layer Thickness In Chinese Boreal Forests From 2000 To 2015, Xiongxiong Bai, Jian Yang, Bo Tao, Wei Ren

Forestry and Natural Resources Faculty Publications

The soil active layer in boreal forests is sensitive to climate warming. Climate-induced changes in the active layer may greatly affect the global carbon budget and planetary climatic system by releasing large quantities of greenhouse gases that currently are stored in permafrost. Ground surface temperature is an immediate driver of active layer thickness (ALT) dynamics. In this study, we mapped ALT distribution in Chinese boreal larch forests from 2000 to 2015 by integrating remote sensing data with the Stefan equation. We then examined the changes of the ALT in response to changes in ground surface temperature and identified drivers of …

Lake Regionalization And Diatom Metacommunity Structuring In Tropical South America, Xavier Benito, Sherilyn C. Fritz, Miriam Steinitz-Kannan, Maria I. Vélez, Michael M. Mcglue

Earth and Environmental Sciences Faculty Publications

Lakes and their topological distribution across Earth's surface impose ecological and evolutionary constraints on aquatic metacommunities. In this study, we group similar lake ecosystems as metacommunity units influencing diatom community structure. We assembled a database of 195 lakes from the tropical Andes and adjacent lowlands (8°N–30°S and 58–79°W) with associated environmental predictors to examine diatom metacommunity patterns at two different levels: taxon and functional (deconstructed species matrix by ecological guilds). We also derived spatial variables that inherently assessed the relative role of dispersal. Using complementary multivariate statistical techniques (principal component analysis, cluster analysis, nonmetric multidimensional scaling, Procrustes, variance partitioning), we …

Managing Herbicide Resistance: Listening To The Perspectives Of Practitioners. Procedures For Conducting Listening Sessions And An Evaluation Of The Process, Jill Schroeder, Michael Barrett, David R. Shaw, Amy B. Asmus, Harold Coble, David Ervin, Raymond A. Jussaume Jr., Micheal D. K. Owen, Ian Burke, Cody F. Creech, A. Stanley Culpepper, William S. Curran, Darrin M. Dodds, Todd A. Gaines, Jeffrey L. Gunsolus, Bradley D. Hanson, Prashant Jha, Annie E. Klodd, Andrew R. Kniss, Ramon G. Leon, Sandra Mcdonald, Don W. Morishita, Brian J. Schutte, Christy L. Sprague, Phillip W. Stahlman, Larry E. Steckel, Mark J. Vangessel

Plant and Soil Sciences Faculty Publications

Seven half-day regional listening sessions were held between December 2016 and April 2017 with groups of diverse stakeholders on the issues and potential solutions for herbicide-resistance management. The objective of the listening sessions was to connect with stakeholders and hear their challenges and recommendations for addressing herbicide resistance. The coordinating team hired Strategic Conservation Solutions, LLC, to facilitate all the sessions. They and the coordinating team used in-person meetings, teleconferences, and email to communicate and coordinate the activities leading up to each regional listening session. The agenda was the same across all sessions and included small-group discussions followed by reporting …

Plant And Microbial Responses To Repeated Cu(Oh)2 Nanopesticide Exposures Under Different Fertilization Levels In An Agro-Ecosystem, Marie Simonin, Benjamin P. Colman, Weiyi Tang, Jonathan D. Judy, Steven M. Anderson, Christina M. Bergemann, Jennifer D. Rocca, Jason M. Unrine, Nicolas Cassar, Emily S. Bernhardt

Plant and Soil Sciences Faculty Publications

The environmental fate and potential impacts of nanopesticides on agroecosystems under realistic agricultural conditions are poorly understood. As a result, the benefits and risks of these novel formulations compared to the conventional products are currently unclear. Here, we examined the effects of repeated realistic exposures of the Cu(OH)₂ nanopesticide, Kocide 3000, on simulated agricultural pastureland in an outdoor mesocosm experiment over 1 year. The Kocide applications were performed alongside three different mineral fertilization levels (Ambient, Low, and High) to assess the environmental impacts of this nanopesticide under low-input or conventional farming scenarios. The effects of Kocide over time were …

Genome-Wide Atlas Of Alternative Polyadenylation In The Forage Legume Red Clover, Manohar Chakrabarti, Randy D. Dinkins, Arthur G. Hunt

Plant and Soil Sciences Faculty Publications

Studies on prevalence and significance of alternative polyadenylation (APA) in plants have been so far limited mostly to the model plants. Here, a genome-wide analysis of APA was carried out in different tissue types in the non-model forage legume red clover (Trifolium pratense L). A profile of poly(A) sites in different tissue types was generated using so-called ‘poly(A)-tag sequencing’ (PATseq) approach. Our analysis revealed tissue-wise dynamics of usage of poly(A) sites located at different genomic locations. We also identified poly(A) sites and underlying genes displaying APA in different tissues. Functional categories enriched in groups of genes manifesting APA between …

Characteristics Of Cover-Collapse Sinkholes In Kentucky, James C. Currens

Report of Investigations--KGS

Sudden collapse of unconsolidated earth materials over soluble bedrock, known as cover collapse, damages buildings, roads, utility lines, and farm equipment in Kentucky. It has also killed livestock, including Thoroughbred horses, and injured people. The estimated annual cost of sinkhole cover collapse in Kentucky ranges from $20 million to $84 million and is sensitive to rare but expensive events such as the 2014 National Corvette Museum collapse. The Kentucky Geological Survey began developing a catalog of case histories of cover-collapse occurrences in 1997, and receives an average of 24 reports each year. Three hundred fifty-four occurrences of cover-collapse sinkholes throughout …

A Broad Spectrum Racemase In Pseudomonas Putida Kt2440 Plays A Key Role In Amino Acid Catabolism, Atanas D. Radkov, Luke A. Moe

Plant and Soil Sciences Faculty Publications

The broad-spectrum amino acid racemase (Alr) of Pseudomonas putida KT2440 preferentially interconverts the L- and D-stereoisomers of Lys and Arg. Despite conservation of broad-spectrum racemases among bacteria, little is known regarding their physiological role. Here we explore potential functional roles for Alr in P. putida KT2440. We demonstrate through cellular fractionation that Alr enzymatic activity is found in the periplasm, consistent with its putative periplasm targeting sequence. Specific activity of Alr is highest during exponential growth, and this activity corresponds with an increased accumulation of D-Lys in the growth medium. An alr gene knockout strain (Δalr) was generated …

Gwas For Fusarium Head Blight Related Traits In Winter Wheat (Triticum Aestivum L.) In An Artificially Warmed Treatment, Elisane W. Tessmann, David A. Van Sanford

Plant and Soil Sciences Faculty Publications

Global temperature increases will affect Fusarium head blight (FHB) levels in wheat (Triticum aestivum L.). A pressing question is whether current sources of resistance will be effective in a warmer environment. We evaluated phenotypic response to disease in 238 soft winter wheat breeding lines and cultivars grown in 2015–2016 and 2016–2017 under control and warmed (+3 °C) conditions. Warming was achieved with heating cables buried 3 cm in the rhizosphere. We measured heading date, plant height, yield, FHB rating, Fusarium damaged kernels (FDK), deoxynivalenol (DON), leaf blotch rating, powdery mildew rating and leaf rust rating. There were significant ( …

Comparison Of Cultivation Methods Impact On Playability Of Agrostis Stolonifera Greens, K. Dickson, J. Sorochan, Gregg Munshaw, A. Thomas

Plant and Soil Sciences Faculty Publications

Creeping bentrgrass putting greens require intense management due to stoloniferous growth (thatch accumulation) and excessive wear and traffic by equipment and golfers. Increases in thatch and soil compaction are often managed with cultivation practices, which lead to downtime for golfers. Field research was conducted in Knoxville, TN, and Elizabethtown, KY, to compare new and traditional cultivation methods for their impact on playability on creeping bentgrass putting greens. Treatments included air injection, dry sand injection, solid tine cultivation topdressed with sand, hollow tine cultivation topdressed with sand, and non-treated control. Treatments were arranged in a randomized complete block design replicated three …

Advancing The Understanding Of Environmental Transformations, Bioavailability And Effects Of Nanomaterials, An International Us Environmental Protection Agency—Uk Environmental Nanoscience Initiative Joint Program, Mitch M. Lasat, Kian Fan Chung, Jamie Lead, Steve Mcgrath, Richard J. Owen, Sophie Rocks, Jason M. Unrine, Junfeng Zhang

Plant and Soil Sciences Faculty Publications

Nanotechnology has significant economic, health, and environmental benefits, including renewable energy and innovative environmental solutions. Manufactured nanoparticles have been incorporated into new materials and products because of their novel or enhanced properties. These very same properties also have prompted concerns about the potential environmental and human health hazard and risk posed by the manufactured nanomaterials. Appropriate risk management responses require the development of models capable of predicting the environmental and human health effects of the nanomaterials. Development of predictive models has been hampered by a lack of information concerning the environmental fate, behavior and effects of manufactured nanoparticles. The United …

Importance Considered Organic Versus Inorganic Source Of Carbon To Lakes For Calculating Net Effect On Landscape C Budgets, Weiqi Lu, Shilu Wang, Kevin M. Yeager, Fang Liu, Qiangsheng Huang, Yuxue Yang, Peng Xiang, Yingchun Lü, Chong-Qiang Liu

Earth and Environmental Sciences Faculty Publications

Lakes and reservoirs transform, emit, and bury carbon that is exported from land and are thus significant components of terrestrial carbon budgets. Their significance is often assessed by integrating these water bodies into terrestrial primary production. However, the transfer of inorganic carbon (IC) is likely a sticking point for these integrations because IC is not part of net ecosystem production. Here we integrated carbon evasion and organic carbon (OC) burial in a lake in the context of inorganic and OC cycling in a karst catchment from a system perspective. The lake emitted carbon dioxide (CO₂) and buried OC …

Herbivory And Eutrophication Mediate Grassland Plant Nutrient Responses Across A Global Climatic Gradient, T. Michael Anderson, Daniel M. Griffith, James B. Grace, Eric M. Lind, Peter B. Adler, Lori A. Biederman, Dana M. Blumenthal, Pedro Daleo, Jennifer Firn, Nicole Hagenah, W. Stanley Harpole, Andrew S. Macdougall, Rebecca L. Mcculley, Suzanne M. Prober, Anita C. Risch, Mahesh Sankaran, Martin Schütz, Eric W. Seabloom, Carly J. Stevens, Lauren L. Sullivan, Peter D. Wragg, Elizabeth T. Borer

Plant and Soil Sciences Faculty Publications

Plant stoichiometry, the relative concentration of elements, is a key regulator of ecosystem functioning and is also being altered by human activities. In this paper we sought to understand the global drivers of plant stoichiometry and compare the relative contribution of climatic vs. anthropogenic effects. We addressed this goal by measuring plant elemental (C, N, P and K) responses to eutrophication and vertebrate herbivore exclusion at eighteen sites on six continents. Across sites, climate and atmospheric N deposition emerged as strong predictors of plot‐level tissue nutrients, mediated by biomass and plant chemistry. Within sites, fertilization increased total plant nutrient pools, …

Spatially Heterogeneous Post-Caledonian Burial And Exhumation Across The Scottish Highlands, Michelle L. Fame, James A. Spotila, Lewis A. Owen, Jason M. Dortch, David L. Shuster

Faculty, Staff, and Affiliated Publications--KGS

The postassembly, postrift evolution of passive margins is an essential element of global continental tectonics. Thermal and exhumational histories of passive margins are commonly attributed to a number of drivers, including uplift and erosional retreat of a rift-flank escarpment, intraplate fault reactivation, mantle-driven uplift, and erosional disequilibrium, yet in many cases, a specific factor may appear to dominate the history of a given passive margin. Here, we investigate the complex evolution of passive margins by quantifying exhumation patterns in western Scotland. We build upon the well-studied thermal evolution of the Scottish North Atlantic passive margin to test the importance of …

Predicting Potential Fire Severity Using Vegetation, Topography And Surface Moisture Availability In A Eurasian Boreal Forest Landscape, Lei Fang, Jian Yang, Megan White, Zhihua Liu

Forestry and Natural Resources Faculty Publications

Severity of wildfires is a critical component of the fire regime and plays an important role in determining forest ecosystem response to fire disturbance. Predicting spatial distribution of potential fire severity can be valuable in guiding fire and fuel management planning. Spatial controls on fire severity patterns have attracted growing interest, but few studies have attempted to predict potential fire severity in fire-prone Eurasian boreal forests. Furthermore, the influences of fire weather variation on spatial heterogeneity of fire severity remain poorly understood at fine scales. We assessed the relative importance and influence of pre-fire vegetation, topography, and surface moisture availability …

Discussion And Survey, Conference Attendees

Kentucky Alfalfa and Stored Forage Conference

No abstract provided.

The Future Of Alfalfa: Understanding Gmo Traits And Their Impact On Production And Marketing, Phil Bollman

Kentucky Alfalfa and Stored Forage Conference

No abstract provided.

Emerging Export Markets For High Quality Alfalfa Hay, Tom Keene

Kentucky Alfalfa and Stored Forage Conference

The exporting of hay from country to country has been evolving for many years. When we look at today’s exports of American hay, we see that the majority of it takes place off the west coast.

Managing Frost Damaged Alfalfa Stands, Christopher D. Teutsch, Jimmy C. Henning, S. Ray Smith, Tom Keene, Matthew Dixon

Kentucky Alfalfa and Stored Forage Conference

Wide fluctuations in springtime temperature are common in Kentucky. Late freezing temperatures in the spring can cause damage to alfalfa depending on how far along it is in breaking dormancy. This publication provides information on the effect of low spring temperatures on both established and new alfalfa stands that have begun growth, as well as a method of predicting sensitivity to late frosts or freezes.

Harvesting Alfalfa For Quality, Garry D. Lacefield

Kentucky Alfalfa and Stored Forage Conference

Alfalfa can be harvested for hay, baleage, silage, greenchop or grazing. Our goal is to produce, harvest and market high yielding-high quality forage. Profitable alfalfa programs consist of four basic phases and each phase have a specific goal.

Integrated Management Of Alfalfa Diseases, Kiersten A. Wise

Kentucky Alfalfa and Stored Forage Conference

Alfalfa diseases can reduce forage quality and the longevity of alfalfa stands. Integrated management of diseases can minimize disease impact and improve forage stand and quality. There are several important pathogens that cause disease on alfalfa, and the occurrence of these diseases, as well as the severity of damage, depend on several factors, including the type of pathogen, the environment, and the level of resistance of the host to a particular disease. In addition, disease presence and severity are also influenced by agronomic practices, particularly sowing dates, cutting dates and frequency, and fertility programs.