Earth Sciences Commons^™

Numerical Modeling Of The Interactions Between Nonlinear Waves And Arbitrarily Flexible Vegetation, Navid Tahvildari

Civil & Environmental Engineering Faculty Publications

Coastal wetlands are among the natural features with the capability to dissipate wave energy and reduce storm damage. Inadequate representation of wave and vegetation characteristics in numerical models may reduce their capability in predicting wave processes over wetlands. Previous numerical wave models have typically applied simplifications on vegetation behavior. For instance, vegetation stems were usually assumed to be rigid or semi-flexible and thus extreme stem deflections could not be captured. In this study, a time-domain nonlinear numerical model based on extended Boussinesq formulation is developed and coupled with a numerical model for vegetation blade dynamics that allows for arbitrary flexibility. …

Effects Of Nonaerated Circulation Water Velocity On Nutrient Release From Aquaculture Pond Sediments, Xiangju Cheng, Dantong Zhu, Xixi Wang, Deguang Yu, Jun Xie

Civil & Environmental Engineering Faculty Publications

Sustaining good water quality in aquaculture ponds is vital. Without an aerator, the dissolved oxygen in ponds comes primarily from mass transfer at the water-ambient atmosphere interface. As sediment can seriously affect water quality, this study used indoor experiments to examine the nutrient (nitrogen and phosphorus) release mechanisms and fluxes from sediment in aquaculture ponds with moving water but no aeration. The results showed that the ammonia nitrogen (NH₃-N) concentration in the overlying water was inversely proportional to flow velocity and that a higher flow velocity tended to result in a lower concentration in the overlying water, a …

Widespread Infilling Of Tidal Channels And Navigable Waterways In The Human-Modified Tidal Deltaplain Of Southwest Bangladesh, C. Wilson, S. Goodbred, C. Small, J. Gilligan, S. Sams, B. Mallick, R. Hale

OES Faculty Publications

Since the 1960s, ~5000 km² of tidal deltaplain in southwest Bangladesh has been embanked and converted to densely inhabited, agricultural islands (i.e., polders). This landscape is juxtaposed to the adjacent Sundarbans, a pristine mangrove forest, both well connected by a dense network of tidal channels that effectively convey water and sediment throughout the region. The extensive embanking in poldered areas, however, has greatly reduced the tidal prism (i.e., volume of water) transported through local channels. We reveal that >600 km of these major waterways have infilled in recent decades, converting to land through enhanced sedimentation and the direct blocking …

Water–Soil–Vegetation Dynamic Interactions In Changing Climate, Xixi Wang, Xuefeng Chu, Tingxi Liu, Xiangju Cheng, Rich Whittecar

Civil & Environmental Engineering Faculty Publications

Previous studies of land degradation, topsoil erosion, and hydrologic alteration typically focus on these subjects individually, missing important interrelationships among these important aspects of the Earth's system. However, an understanding of water–soil–vegetation dynamic interactions is needed to develop practical and effective solutions to sustain the globe's eco-environment and grassland agriculture, which depends on grasses, legumes, and other fodder or soil-building crops. This special issue is intended to be a platform for a discussion of the relevant scientific findings based on experimental and/or modeling studies. Its 12 peer-reviewed articles present data, novel analysis/modeling approaches, and convincing results of water–soil–vegetation interactions under …

Community Production Modulates Coral Reef Ph And The Sensitivity Of Ecosystem Calcification To Ocean Acidification, Thomas M. Decarlo, Anne L. Cohen, George T. F. Wong, Fuh-Kwo Shiah, Steven J. Lentz, Kristen A. Davis, Kathryn E. F. Shamberger, Pat Lohmann

OES Faculty Publications

Coral reefs are built of calcium carbonate (CaCO₃) produced biogenically by a diversity of calcifying plants, animals, and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a 2 week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the nonbleaching period was ~8.5, significantly elevated above that of the surrounding open ocean (~8.0-8.1) as …

Spatial Patterns Of Sea Level Variability Associated With Natural Internal Climate Modes, Weiqing Han, Gerald A. Meehl, Detlef Stammer, Aixue Hu, Benjamin Hamlington, Jessica Kenigson, Hindumathi Palanisamy, Philip Thompson

OES Faculty Publications

Sea level rise (SLR) can exert significant stress on highly populated coastal societies and low-lying island countries around the world. Because of this, there is huge societal demand for improved decadal predictions and future projections of SLR, particularly on a local scale along coastlines. Regionally, sea level variations can deviate considerably from the global mean due to various geophysical processes. These include changes of ocean circulations, which partially can be attributed to natural, internal modes of variability in the complex Earth's climate system. Anthropogenic influence may also contribute to regional sea level variations. Separating the effects of natural climate modes …

Using Rare Earth Elements To Constrain Particulate Organic Carbon Flux In The East China Sea, Chin-Chang Hung, Ya-Feng Chen, Shih-Chieh Hsu, Kui Wang, Jianfang Chen, David J. Burdige

OES Faculty Publications

Fluxes of particulate organic carbon (POC) in the East China Sea (ECS) have been reported to decrease from the inner continental shelf towards the outer continental shelf. Recent research has shown that POC fluxes in the ECS may be overestimated due to active sediment resuspension. To better characterize the effect of sediment resuspension on particle fluxes in the ECS, rare earth elements (REEs) and organic carbon (OC) were used in separate two-member mixing models to evaluate trap-collected POC fluxes. The ratio of resuspended particles from sediments to total trap-collected particles in the ECS ranged from 82-94% using the OC mixing …

A Tribute To Thomas M. Church: Exploring Chemical Oceanography In The Coastal Zone-The History And Future, Gregory A. Cutter, David J. Burdige

OES Faculty Publications

(First paragraph) One can find different historical perspectives on the development of studying the chemistry of oceans as well as names for this study—marine chemistry, chemistry of the sea, marine aquatic chemistry, marine biogeochemistry, or chemical oceanography. It could be argued that chemical oceanography is the most inclusive for an earth science since oceanography itself is an integrated discipline that links the biology, chemistry, geology, and physics together. Regardless of the name, perhaps the first intensive, modern/post-nineteenth century study of the ocean’s chemistry was the GEOSECS Program from ca. 1970–1978. The significance of GEOSECS was that it examined the chemistry …

Subsidence Monitoring In Hampton Roads Using Satellites, Ben Hamlington

July 29, 2016: The Latest in Sea Level Rise Science

No abstract provided.

Discipline-Based Planetary Education Research And Computational Fluid Dynamics Analysis Of Mars, Filis Coba

Physics Theses & Dissertations

This thesis originates from the testing and implementation of an IRB-approved interactive animation designed to help students understand what causes The Reasons For The Seasons (RFTS) on Earth. Results from the testing indicated a small improvement in student understanding after exposure to the animation. Next, using the 3-D mapping tool Google Earth, students explored seasons and other planetary features on Mercury, Venus, the Moon and Mars through IRB-approved interactive tours which were developed and tested for astronomy education. Results from the tests indicated that there were statistically significant learning gains (p-value < 0.05) after students interacted with the tours compared to those who did not. The development of the tours inspired a geophysics study of the possibility of former plate motion (or plate tectonics) on Mars. A 2-D finite element convection model for the mantle of Mars was designed and solved using COMSOL Multiphysics 5.1, to investigate whether or not thermal gradients in a Mars-sized planet could cause vigorous upper mantle convection, consistent with plate tectonic processes. Results from this project indicated that stable convection could occur in the interior of a Mars-like planet assuming the presence of sufficiently high thermal gradients at about 0.8 times the mantle temperature of Earth. The convective patterns resembled hot upwelling and cool downwelling which may be similar to subduction-like features. Furthermore, increasing the temperature of the hot boundaries resulted in faster, more rigorous convective motions and a hotter average temperature.

Reevaluating The Geologic Formations Of The Upper Coastal Plain In Chesterfield County, South Carolina, Bradley Aaron Fitzwater

OES Theses and Dissertations

Data from a new geological map of the Patrick, S.C. 7.5 minute quadrangle (1:24,000) and detailed descriptions of two cores collected nearby (Middendorf and Cheraw, S.C.) permit improved interpretation of the geology of this portion of the Carolina Sandhills. Geologic mapping incorporated analyses of outcrops with LiDAR data, soil survey maps, ground-penetrating radar transects, and hand auger borings. Micro- and macrofossil identification and optically-stimulated luminescence (OSL) dating provided age control.

Four distinct mappable units occur throughout the Patrick quadrangle. Resting unconformably on schist of the Paleozoic Persimmons Fork Formation, the Cretaceous Middendorf Formation is more than 85.3 m thick and …

Coastal Ocean And Shelf-Sea Biogeochemical Cycling Of Trace Elements And Isotopes: Lessons Learned From Geotraces, Matthew A. Charette, Phoebe J. Lam, Maeve C. Lohan, Eun Young Kwon, Vanessa Hatje, Catherine Jeandel, Alan M. Shiller, Gregory A. Cutter, Alex Thomas, Philip W. Boyd

OES Faculty Publications

Continental shelves and shelf seas play a central role in the global carbon cycle. However, their importance with respect to trace element and isotope (TEI) inputs to ocean basins is less well understood. Here, we present major findings on shelf TEI biogeochemistry from the GEOTRACES programme as well as a proof of concept for a new method to estimate shelf TEI fluxes. The case studies focus on advances in our understanding of TEI cycling in the Arctic, transformations within a major river estuary (Amazon), shelf sediment micronutrient fluxes and basin-scale estimates of submarine groundwater discharge. The proposed shelf flux tracer …

Low-Temperature Artificial Maturation Studies Of Type Ii And Type Iii Kerogens: Implications For Biogenic Gas Production, Albert Willy Nguena Kamga

Chemistry & Biochemistry Theses & Dissertations

Ancient organic matter (OM) in shales and coals, known mainly as Type II and Type III OM are known to produce both biogenic, thermogenic gas and oil. In this dissertation, mild artificial maturation, via closed system pyrolysis, is employed to determine the thermal reactivity of Type II and Type III OM beyond diagenesis. We select three Type II kerogens: i) Type II kerogen isolated from recent cores (3.3 Ma, Ro = 0.28) recovered from an upwelling basin in Namibia, Africa referred to as ODP Sediment, ii) Type II-S isolated from sediments (150 Ma, Ro = 0.38) recovered from an outcrop …

The Marine Cyanate Cycle, Brittany Widner

OES Theses and Dissertations

Cyanate (OCN-) is a reduced nitrogen compound with the potential to serve as a nitrogen and carbon source for marine microbes. Evidence from genomes and culture studies indicated that several marine cyanobacterial groups, including representatives of the globally important genera Synechococcus and Prochlorococcus, might be capable of cyanate assimilation. However, prior to this study, the distribution, bioavailability, and production pathways of cyanate were unknown in natural systems due to the absence of a sensitive cyanate assay; and the ability of organisms to assimilate cyanate on relevant timescales was unknown because we lacked a suitable tracer for measuring uptake. I developed …

Nitrous Oxide In The Atmosphere: First Measurements Of A Lower Thermospheric Source, Patrick E. Sheese, Kaley A. Walker, Chris D. Boone, Peter F. Bernath, Bernd Funke

Chemistry & Biochemistry Faculty Publications

Nitrous oxide (N₂O) is an important anthropogenic greenhouse gas, as well as one of the most significant anthropogenic ozone-depleting substances in the stratosphere. The satellite-based instrument Atmospheric Chemistry Experiment-Fourier Transform Spectrometer has been observing the Earth's limb since 2004 and derives profiles of N₂O volume mixing ratios in the upper troposphere to the lower thermosphere. The resulting climatology shows that N₂O is continuously produced in the lower thermosphere via energetic particle precipitation and enhanced N₂O is present at all latitudes, during all seasons. The results are consistent with an N₂O …

Disaster Prevention Literacy Among School Administrators And Teachers: A Study On The Plan For Disaster Prevention And Campus Network Deployment And Experiment In Taiwan, Sung-Chin Chung, Cherng-Jyh Yen

Educational Leadership & Workforce Development Faculty Publications

Taiwan is located at the high-risk region of natural disasters with the frequently occurred earthquakes. The importance of the disaster prevention education on campus is made even more obvious by the fact that natural disasters often occur during the school days. Given the leading roles the school administrators and teachers playing in the disaster prevention education of their pupils, this study purposed to investigate how disaster prevention literacy was among them and how disaster prevention literacy differed across various background variables of them. Furthermore, the current study also examined if disaster prevention literacy changed by participation in the disaster prevention …

Estimated Grass Grazing Removal Rate In A Semiarid Eurasian Steppe Watershed As Influenced By Climate, Xixi Wang, Shohreh Pedram, Tingxi Liu, Ruizhong Gao, Fengling Li, Yanyun Luo

Civil & Environmental Engineering Faculty Publications

Grazing removal rate of grasses needs to be determined for various climate conditions to address eco-environmental concerns (e.g., desertification) related to steppe grassland degradation. The conventional approach, which requires survey data on animal species and heads as well as grass consumption per individual animal, is too costly and time-consuming to be applied at a watershed scale. The objective of this study was to present a new approach that can be used to estimate grazing removal rate with no requirement of animal-related data. The application of this new approach was demonstrated in a Eurasian semiarid typical-steppe watershed for an analysis period …

The Martian Surface Radiation Environment- A Comparison Of Models And Msl/Rad Measurements, Daniel Matthiä, Bent Ehresmann, Henning Lohf, Jan Köhler, Cary Zeitlin, Jan Appel, John W. Wilson

Mathematics & Statistics Faculty Publications

Context: The Radiation Assessment Detector (RAD) on the Mars Science Laboratory (MSL) has been measuring the radiation environment on the surface of Mars since August 6th 2012. MSL-RAD is the first instrument to provide detailed information about charged and neutral particle spectra and dose rates on the Martian surface, and one of the primary objectives of the RAD investigation is to help improve and validate current radiation transport models.

Aims: Applying different numerical transport models with boundary conditions derived from the MSL-RAD environment the goal of this work was to both provide predictions for the particle spectra and the radiation …

Developing Priority Variables (“Ecosystem Essential Ocean Variables” — Eeovs) For Observing Dynamics And Change In Southern Ocean Ecosystems, Andrew J. Constable, Daniel P. Costa, Oscar Schofield, Louise Newman, Edward R. Urban Jr., Elizabeth A. Fulton, Jessica Melbourne-Thomas, Tosca Ballerini, Philip W. Boyd, Angelika Brandt, Eileen E. Hofmann

CCPO Publications

Reliable statements about variability and change in marine ecosystems and their underlying causes are needed to report on their status and to guide management. Here we use the Framework on Ocean Observing (FOO) to begin developing ecosystem Essential Ocean Variables (eEOVs) for the Southern Ocean Observing System (SOOS). An eEOV is a defined biological or ecological quantity, which is derived from field observations, and which contributes significantly to assessments of Southern Ocean ecosystems. Here, assessments are concerned with estimating status and trends in ecosystem properties, attribution of trends to causes, and predicting future trajectories. eEOVs should be feasible to collect …

Measurement Of Antioxidant Activity Toward Superoxide In Natural Waters, D. Whitney King, Emma Berger, Zachary Helm, Eleanor Irish, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

Antioxidants are a class of molecules that provide a protective function against reactive oxygen species (ROS) in biological systems by out competing physiologically important molecules for ROS oxidation. In natural waters, the reactivity of antioxidants gives an estimate of oxidative stress, and may determine the reactivity and distribution of reactive oxidants. We present an analytical method to measure antioxidant activity in natural waters through the competition between ascorbic acid, an antioxidant, and MCLA, a chemiluminescent probe for superoxide. A numerical kinetic model of the analytical method has been developed to optimize analytical performance. Measurements of antioxidant concentrations in pure and …

Water Vapour Variability In The High-Latitude Upper Troposphere- Part 2: Impact Of Volcanic Eruptions, Christopher E. Sioris, Jason Zou, C. Thomas Mcelroy, Chris D. Boone, Patrick E. Sheese, Peter F. Bernath

Chemistry & Biochemistry Faculty Publications

The impact of volcanic eruptions on water vapour in the high-latitude upper troposphere is studied using deseasonalized time series based on observations by the Atmospheric Chemistry Experiment (ACE) water vapour sensors, namely MAESTRO (Measurements of Aerosol Extinction in the Stratosphere and Troposphere Retrieved by Occultation) and the Fourier Transform Spectrometer (ACE-FTS). The two eruptions with the greatest impact on the high-latitude upper troposphere during the time frame of this satellitebased remote sensing mission are chosen. The Puyehue-Cordón Caulle volcanic eruption in June 2011 was the most explosive in the past 24 years and is shown to be able to account …

Assessing The Impact Of Vertical Land Motion On Twentieth Century Global Mean Sea Level Estimates, B. D. Hamlington, P. Thompson, W. C. Hammond, G. Blewitt, R. D. Ray

CCPO Publications

Near-global and continuous measurements from satellite altimetry have provided accurate estimates of global mean sea level in the past two decades. Extending these estimates further into the past is a challenge using the historical tide gauge records. Not only is sampling nonuniform in both space and time, but tide gauges are also affected by vertical land motion (VLM) that creates a relative sea level change not representative of ocean variability. To allow for comparisons to the satellite altimetry estimated global mean sea level (GMSL), typically the tide gauges are corrected using glacial isostatic adjustment (GIA) models. This approach, however, does …

Temporal Variations Of Streamflow In A Mid-Latitude Eurasian Steppe Watershed In The Past Half Century, Xixi Wang

Civil & Environmental Engineering Faculty Publications

Previous studies either did not identify abrupt change or identified such change but did not exclude it from the detection of trend in streamflow. As a result, an overall downward trend might be erroneously detected as an upward trend because of abrupt increase, while an overall upward trend could be faked as a downward trend due to abrupt decrease. The objectives of this study were to: (1) present a methodology to analyze trend in streamflow in the presence of abrupt change; and (2) use this methodology to detect trend and extreme occurrence of streamflow in the Upper Balagaer River watershed, …

Carbon Cycling In Santa Barbara Basin Sediments: A Modeling Study, David J. Burdige, Tomoko Komada, Cédric Magen, Jeffrey P. Chanton

OES Faculty Publications

The primary input of organic matter to almost all marine sediments comes from deposition at the sediment surface. However, in many continental margin settings, reduced carbon can also be added to sediments from below—for example, from “deep” geologic hydrocarbon reservoirs derived from ancient source rocks or from the decomposition of deeply buried gas hydrate deposits. To examine the impact of these two differing reduced carbon inputs on sediment biogeochemistry, a modified reaction-transport model for anoxic marine sediments is described here and applied to data from sediment cores in Santa Barbara Basin to a depth of 4.6 m. Excellent model fits …

An Alignment-Free "Metapeptide" Strategy For Metaproteomic Characterization Of Microbiome Samples Using Shotgun Metagenomic Sequencing, Damon H. May, Emma Timmins-Schiffman, Molly P. Mikan, H. Rodger Harvey, Elhanan Borenstein, Brook L. Nunn, William S. Noble

OES Faculty Publications

In principle, tandem mass spectrometry can be used to detect and quantify the peptides present in a microbiome sample, enabling functional and taxonomic insight into microbiome metabolic activity. However, the phylogenetic diversity constituting a particular microbiome is often unknown, and many of the organisms present may not have assembled genomes. In ocean microbiome samples, with particularly diverse and uncultured bacterial communities, it is difficult to construct protein databases that contain the bulk of the peptides in the sample without losing detection sensitivity due to the overwhelming number of candidate peptides for each tandem mass spectrum. We describe a method for …

Dynamics Of Plume-Triple Junction Interaction: Results From A Series Of Three-Dimensional Numerical Models And Implications For The Formation Of Oceanic Plateaus, Mladen Dordevic, Jennifer Georgen

OES Faculty Publications

Mantle plumes rising in the vicinity of mid-ocean ridges often generate anomalies in melt production and seafloor depth. This study investigates the dynamical interactions between a mantle plume and a ridge-ridge-ridge triple junction, using a parameter space approach and a suite of steady state, three-dimensional finite element numerical models. The top domain boundary is composed of three diverging plates, with each assigned half-spreading rates with respect to a fixed triple junction point. The bottom boundary is kept at a constant temperature of 1350°C except where a two-dimensional, Gaussian-shaped thermal anomaly simulating a plume is imposed. Models vary plume diameter, plume …

Mechanism Of Seasonal Arctic Sea Ice Evolution And Arctic Amplification, Kwang-Yul Kim, Benjamin D. Hamlington, Hanna Na, Jinju Kim

CCPO Publications

Sea ice loss is proposed as a primary reason for the Arctic amplification, although the physical mechanism of the Arctic amplification and its connection with sea ice melting is still in debate. In the present study, monthly ERA-Interim reanalysis data are analyzed via cyclostationary empirical orthogonal function analysis to understand the seasonal mechanism of sea ice loss in the Arctic Ocean and the Arctic amplification. While sea ice loss is widespread over much of the perimeter of the Arctic Ocean in summer, sea ice remains thin in winter only in the Barents-Kara seas. Excessive turbulent heat flux through the sea …

Modelling The Response Of Ice Shelf Basal Melting To Different Ocean Cavity Environmental Regimes, David E. Gwyther, Eva A. Cougnon, Benjamin K. Galton-Fenzi, Jason L. Roberts, John R. Hunter, Michael S. Dinniman

CCPO Publications

We present simulation results from a version of the Regional Ocean Modeling System modified for ice shelf/ocean interaction, including the parameterisation of basal melting by molecular diffusion alone. Simulations investigate the differences in melting for an idealised ice shelf experiencing a range of cold to hot ocean cavity conditions. Both the pattern of melt and the location of maximum melt shift due to changes in the buoyancy-driven circulation, in a different way to previous studies. Tidal forcing increases both the circulation strength and melting, with the strongest impact on the cold cavity case. Our results highlight the importance of including …

Validation Of The Global Distribution Of Co2 Volume Mixing Ratio In The Mesosphere And Lower Thermosphere From Saber, L. Rezac, Y. Jian, J. Yue, J. M. Russell Iii, A. Kutepov, R. Garcia, K. Walker, P. Bernath

Chemistry & Biochemistry Faculty Publications

The Sounding of the Atmosphere using Broadband Emission Radiometry (SABER) instrument on board the Thermosphere Ionosphere Mesosphere Energetics and Dynamics satellite has been measuring the limb radiance in 10 broadband infrared channels over the altitude range from ~ 400 km to the Earth's surface since 2002. The kinetic temperatures and CO₂ volume mixing ratios (VMRs) in the mesosphere and lower thermosphere have been simultaneously retrieved using SABER limb radiances at 15 and 4.3 μm under nonlocal thermodynamic equilibrium (non-LTE) conditions. This paper presents results of a validation study of the SABER CO₂ VMRs obtained with a two-channel, self-consistent …

Source-Specific Molecular Signatures For Light-Absorbing Organic Aerosols, Amanda Susan Willoughby

Chemistry & Biochemistry Theses & Dissertations

Organic aerosols (OA) are universally regarded as an important component of the atmosphere based on quantitative significance as well as the far-reaching impact they have on global climate forcing and human health. Despite the acknowledged importance, OA amounts and impacts remain the largest uncertainties regarding radiative forcing estimates. Incomplete chemical characterization of aerosol organic matter (OM) and a lack of concrete source apportionment is a major source of this uncertainty. The primary focus of this study is to provide much needed molecular details regarding ambient OA from key emission sources, and establish links between molecular and optical properties.

Complete chemical …