Data Science Commons^™

Deep Learning For Detecting Trees In The Urban Environment From Lidar, Julian R. Rice

Master's Theses

Cataloguing and classifying trees in the urban environment is a crucial step in urban and environmental planning. However, manual collection and maintenance of this data is expensive and time-consuming. Algorithmic approaches that rely on remote sensing data have been developed for tree detection in forests, though they generally struggle in the more varied urban environment. This work proposes a novel method for the detection of trees in the urban environment that applies deep learning to remote sensing data. Specifically, we train a PointNet-based neural network to predict tree locations directly from LIDAR data augmented with multi-spectral imaging. We compare this …

Spatiotemporal Data Augmentation Of Modis-Landsat Water Bodies Using Generative Adversarial Networks, Ashit Neema

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The monitoring of the shape and area of a water body is an essential component for many Earth science and Hydrological applications. For this purpose, these applications require remote sensing data which provides accurate analysis of the water bodies. In this thesis the same is being attempted, first, a model is created that can map the information from one kind of satellite that captures the data from a distance of 500m to another data that is captured by a different satellite at a distance of 30m. To achieve this, we first collected the data from both of the satellites and …

Optimized Three Deep Learning Models Based-Pso Hyperparameters For Beijing Pm2.5 Prediction, Andri Pranolo, Yingchi Mao, Aji Prasetya Wibawa, Agung Bella Putra Utama, Felix Andika Dwiyanto

Knowledge Engineering and Data Science

Deep learning is a machine learning approach that produces excellent performance in various applications, including natural language processing, image identification, and forecasting. Deep learning network performance depends on the hyperparameter settings. This research attempts to optimize the deep learning architecture of Long short term memory (LSTM), Convolutional neural network (CNN), and Multilayer perceptron (MLP) for forecasting tasks using Particle swarm optimization (PSO), a swarm intelligence-based metaheuristic optimization methodology: Proposed M-1 (PSO-LSTM), M-2 (PSO-CNN), and M-3 (PSO-MLP). Beijing PM2.5 datasets was analyzed to measure the performance of the proposed models. PM2.5 as a target variable was affected by dew point, pressure, …

Computational Models To Detect Radiation In Urban Environments: An Application Of Signal Processing Techniques And Neural Networks To Radiation Data Analysis, Jose Nicolas Gachancipa

Beyond: Undergraduate Research Journal

Radioactive sources, such as uranium-235, are nuclides that emit ionizing radiation, and which can be used to build nuclear weapons. In public areas, the presence of a radioactive nuclide can present a risk to the population, and therefore, it is imperative that threats are identified by radiological search and response teams in a timely and effective manner. In urban environments, such as densely populated cities, radioactive sources may be more difficult to detect, since background radiation produced by surrounding objects and structures (e.g., buildings, cars) can hinder the effective detection of unnatural radioactive material. This article presents a computational model …

Are Sharks Attracted To Caged Fish And Associated Infrastructure?, Charlie Huveneers, Yuri Niella, Michael Drew, Joshua Dennis, Thomas M. Clarke, Alison Wright, Simon Bryars, Matias Braccini, Chris Dowling, Stephen J. Newman, Paul Butcher, Scott Dalton

Fisheries Research Articles

Huveneers Charlie, Niella Yuri, Drew Michael, Dennis Joshua, Clarke Thomas M., Wright Alison, Bryars Simon, Braccini Matias, Dowling Chris, Newman Stephen J., Butcher Paul, Dalton Scott (2022) Are sharks attracted to caged fish and associated infrastructure?. Marine and Freshwater Research 73, 1404-1410.

https://doi.org/10.1071/MF22039

A Method For Bridging Population-Specific Genotypes To Detect Gene Modules Associated With Alzheimer's Disease, Yulin Dai, Peilin Jia, Zhongming Zhao, Assaf Gottlieb

Faculty, Staff and Student Publications

BACKGROUND: Genome-wide association studies have successfully identified variants associated with multiple conditions. However, generalizing discoveries across diverse populations remains challenging due to large variations in genetic composition. Methods that perform gene expression imputation have attempted to address the transferability of gene discoveries across populations, but with limited success.

METHODS: Here, we introduce a pipeline that combines gene expression imputation with gene module discovery, including a dense gene module search and a gene set variation analysis, to address the transferability issue. Our method feeds association probabilities of imputed gene expression with a selected phenotype into tissue-specific gene-module discovery over protein interaction …

Toward A Standard Formal Semantic Representation Of The Model Card Report, Muhammad Tuan Amith, Licong Cui, Degui Zhi, Kirk Roberts, Xiaoqian Jiang, Fang Li, Evan Yu, Cui Tao

Faculty, Staff and Student Publications

BACKGROUND: Model card reports aim to provide informative and transparent description of machine learning models to stakeholders. This report document is of interest to the National Institutes of Health's Bridge2AI initiative to address the FAIR challenges with artificial intelligence-based machine learning models for biomedical research. We present our early undertaking in developing an ontology for capturing the conceptual-level information embedded in model card reports.

RESULTS: Sourcing from existing ontologies and developing the core framework, we generated the Model Card Report Ontology. Our development efforts yielded an OWL2-based artifact that represents and formalizes model card report information. The current release of …

Toward A Standard Formal Semantic Representation Of The Model Card Report, Muhammad Tuan Amith, Licong Cui, Degui Zhi, Kirk Roberts, Xiaoqian Jiang, Fang Li, Evan Yu, Cui Tao

Faculty, Staff and Student Publications

BACKGROUND: Model card reports aim to provide informative and transparent description of machine learning models to stakeholders. This report document is of interest to the National Institutes of Health's Bridge2AI initiative to address the FAIR challenges with artificial intelligence-based machine learning models for biomedical research. We present our early undertaking in developing an ontology for capturing the conceptual-level information embedded in model card reports.

RESULTS: Sourcing from existing ontologies and developing the core framework, we generated the Model Card Report Ontology. Our development efforts yielded an OWL2-based artifact that represents and formalizes model card report information. The current release of …

Constrained Pseudorandom Functions From Pseudorandom Synthesizers, Zachary Kissel

Computer and Data Science Faculty Publications

In this paper we resolve the question of whether or not constrained pseudorandom functions (CPRFs) can be built directly from pseudorandom synthesizers. In particular, we demonstrate that the generic PRF construction from pseudorandom synthesizers due to Naor and Reingold can be used to construct CPRFs with bit-fixed predicates using the "direct-line'' approach. We further introduce a property of CPRFs that may be of independent interest.

Aligning The American Health Information Management Association Entry-Level Curricula Competencies And Career Map With Industry Job Postings: Cross-Sectional Study, Susan H Fenton, David T Marc, Angela Kennedy, Debra Hamada, Robert Hoyt, Karima Lalani, Connie Renda, Rebecca B Reynolds

Faculty, Staff and Student Publications

BACKGROUND: The field of health information management (HIM) focuses on the protection and management of health information from a variety of sources. The American Health Information Management Association (AHIMA) Council for Excellence in Education (CEE) determines the needed skills and competencies for this field. AHIMA's HIM curricula competencies are divided into several domains among the associate, undergraduate, and graduate levels. Moreover, AHIMA's career map displays career paths for HIM professionals. What is not known is whether these competencies and the career map align with industry demands.

OBJECTIVE: The primary aim of this study is to analyze HIM job postings on …

A Comparative Study On Deep Learning Models For Text Classification Of Unstructured Medical Notes With Various Levels Of Class Imbalance, Hongxia Lu, Louis Ehwerhemuepha, Cyril Rakovski

Mathematics, Physics, and Computer Science Faculty Articles and Research

Background

Discharge medical notes written by physicians contain important information about the health condition of patients. Many deep learning algorithms have been successfully applied to extract important information from unstructured medical notes data that can entail subsequent actionable results in the medical domain. This study aims to explore the model performance of various deep learning algorithms in text classification tasks on medical notes with respect to different disease class imbalance scenarios.

Methods

In this study, we employed seven artificial intelligence models, a CNN (Convolutional Neural Network), a Transformer encoder, a pretrained BERT (Bidirectional Encoder Representations from Transformers), and four typical …

Analysis Of Hawk Mountain Sanctuary Observation Data From 1976 Through 2021, Dale E. Parson

Computer Science and Information Technology Faculty

The primary objective is to correlate climate change data to changes in raptor observations at the Hawk Mountain Sanctuary in northern Berks County, Pennsylvania. Additional objectives include uncovering trends in climate observations at Hawk Mountain's North Lookout and the Allentown Airport throughout the observation period, and to examine trends in raptor observation properties independent of climate changes.

Non-Gaussian Analysis Of Herbarium Specimen Damageto Optimize Specimen Collection Management, Aris Yaman, Yulia Aris Kartika, Ariani Indrawati, Zaenal Akbar, Lindung P. Manik, Wita Wardani, Tutie Djarwaningsih, Taufik Mahendra, Dadan R. Saleh

Knowledge Engineering and Data Science

Damage to specimen collections occurs in practically every herbarium across the world. Hence, some precautions must be taken, such as investigating the factors that cause specimen damage in their collections and evaluating their herbarium collection handling and usage policy. However, manual investigation of the causes of herbarium collection damage requires a lot of effort and time. Only a few studies have attempted to investigate the causes of herbarium collection damage. So far, the non-gaussian approach to detecting the causes of damage to herbarium specimens has not been studied before. This study attempted to explore the effect of species type, time, …

Social Distancing Monitoring System Using Deep Learning, Amelia Ritahani Ismail, Nur Shairah Muhd Affendy, Asmarani Ahmad Puzi

Knowledge Engineering and Data Science

COVID-19 has been declared a pandemic in the world by 2020. One way to prevent COVID-19 disease, as the World Health Organization (WHO) suggests, is to keep a distance from other people. It is advised to stay at least 1 meter away from others, even if they do not appear to be sick. The reason is that people can also be the virus carrier without having any symptoms. Thus, many countries have enforced the rules of social distancing in their Standard Operating Procedure (SOP) to prevent the virus spread. Monitoring the social distance is challenging as this requires authorities to …

Automatic 3d Cranial Landmark Positioning Based Onsurface Curvature Feature Using Machine Learning, Putu Hendra Suputra, Anggraini Dwi Sensusiati, Myrtati Dyah Artaria, Gijsbertus Jacob Verkerke, Eko Mulyanto Yuniarno, I Ketut Eddy Purnama

Knowledge Engineering and Data Science

Cranial anthropometric reference points (landmarks) play an important role in craniofacial reconstruction and identification. Knowledge to detect the position of landmarks is critical. This work aims to locate landmarks automatically. Landmarks positioning using Surface Curvature Feature (SCF) is inspired by conventional methods of finding landmarks based on morphometrical features. Each cranial landmark has a unique shape. With the appropriate 3D descriptors, the computer can draw associations between shapes and landmarks using machine learning. The challenge in classification and detection in three-dimensional space is to determine the model and data representation. Using three-dimensional raw data in machine learning is a serious …

The Effect Of Resampling On Classifier Performance: Anempirical Study, Utomo Pujianto, Muhammad Iqbal Akbar, Niendhitta Tamia Lassela, Deni Sutaji

Knowledge Engineering and Data Science

An imbalanced class on a dataset is a common classification problem. The effect of using imbalanced class datasets can cause a decrease in the performance of the classifier. Resampling is one of the solutions to this problem. This study used 100 datasets from 3 websites: UCI Machine Learning, Kaggle, and OpenML. Each dataset will go through 3 processing stages: the resampling process, the classification process, and the significance testing process between performance evaluation values of the combination of classifier and the resampling using paired t-test. The resampling used in the process is Random Undersampling, Random Oversampling, and SMOTE. The classifier …

A Comparison Of Machine Learning Models To Prioritise Emailsusing Emotion Analysis For Customer Service Excellence, Mohammad Yasser Chuttur, Yashinee Parianen

Knowledge Engineering and Data Science

There has been little research on machine learning for email prioritization for customer service excellence. To fill this gap, we propose and assess the efficacy of various machine learning techniques for classifying emails into three degrees of priority: high, low, and neutral, based on the emotions inherent in the email content. It is predicted that after emails are classified into those three categories, recipients will be able to respond to emails more efficiently and provide better customer service. We use the NRC Emotion Lexicon to construct a labeled email dataset of 517,401 messages for our proposal. Following that, we train …

Fish Image Classification Using Transfer Learning Method Withadaptive Learning Rate, Rizka Suhana, Wayan Firdaus Mahmudy, Agung Setia Budi

Knowledge Engineering and Data Science

The diversity of fish species in coral reef ecosystems is one of the indications in determining health in coral reef ecosystems. Many Indonesian Fisheries and Marine Research and Development Agency experts carefully classify fish images. A reliable technique for performing image classification is Convolutional Neural Network (CNN). Transfer learning appears and adopts part of CNN, namely the modified convolution layer. The paper aims to solve the fish classification problem using the pre-trained model of Mobilenet V2. The model has a low computational process and does not use too many memory resources when training image data. The research image data used …

Human Facial Expressions Identification Using Convolutionalneural Network With Vgg16 Architecture, Luther Alexander Latumakulita, Sandy Laurentius Lumintang, Deiby Tineke Salaki, Steven R. Sentinuwo, Alwin Melkie Sambul, Noorul Islam

Knowledge Engineering and Data Science

The human facial expression identification system is essential in developing human interaction and technology. The development of Artificial Intelligence for monitoring human emotions can be helpful in the workplace. Commonly, there are six basic human expressions, namely anger, disgust, fear, happiness, sadness, and surprise, that the system can identify. This study aims to create a facial expression identification system based on basic human expressions using the Convolutional Neural Network (CNN) with a 16-layer VGG architecture. Two thousand one hundred thirty-seven facial expression images were selected from the FER2013, JAFFE, and MUG datasets. By implementing image augmentation and setting up the …

Sentiment Analysis Of Amazon Product Reviews Usingsupervised Machine Learning Techniques, Naveed Sultan

Knowledge Engineering and Data Science

Today, everything is sold online, and many individuals can post reviews about different products to show feedback. Serves as feedback for businesses regarding buyer reviews, performance, product quality, and seller service. The project focuses on buyer opinions based on Mobile Phone reviews. Sentiment analysis is the function of analyzing all these data, obtaining opinions about these products and services that classify them as positive, negative, or neutral. This insight can help companies improve their products and help potential buyers make the right decisions. Once the preprocessing is classified on a trained dataset, these reviews must be preprocessed to remove unwanted …

Assessment Of Electronic Health Record For Cancer Research And Patient Care Through A Scoping Review Of Cancer Natural Language Processing, Liwei Wang, Sunyang Fu, Andrew Wen, Xiaoyang Ruan, Huan He, Sijia Liu, Sungrim Moon, Michelle Mai, Irbaz B Riaz, Nan Wang, Ping Yang, Hua Xu, Jeremy L Warner, Hongfang Liu

Faculty, Staff and Student Publications

Purpose: The advancement of natural language processing (NLP) has promoted the use of detailed textual data in electronic health records (EHRs) to support cancer research and to facilitate patient care. In this review, we aim to assess EHR for cancer research and patient care by using the Minimal Common Oncology Data Elements (mCODE), which is a community-driven effort to define a minimal set of data elements for cancer research and practice. Specifically, we aim to assess the alignment of NLP-extracted data elements with mCODE and review existing NLP methodologies for extracting said data elements.

Methods: Published literature studies were searched …

Development Of The Implementation Of Iot Monitoring System Based On Node-Red Technology, Anvar Kabulov, Inomjon Yarashov, Salamat Mirzataev

Karakalpak Scientific Journal

This article describes how to design and implement a process for storing environmental information in a database using the Internet of Things. The problems that need to be solved with the help of this IoT system are the growing demand for forecasts in the world, the demand of the world market for a new sustainable method of implementing the digitization environment through the Internet of Things. The design was implemented using Arduino, Node-Red and sensors, selected when choosing a component based on the required parameters and sent to the database for monitoring and processing. A study of previous work and …

Statistical Extensions Of Multi-Task Learning With Semiparametric Methods And Task Diagnostics, Nikolay Miller

Mathematics & Statistics ETDs

In this dissertation, I propose new approaches to multi-task learning, inspired by statistical model diagnostics and semiparametric and additive modeling. The newly designed additive multi-task model framework allows for flexible estimation of multi-task parametric and nonparametric effects by using an extension of the backfitting algorithm. Further, I propose new methods for statistical task diagnostics, which allow for the identification and remedy of outlier tasks, based on task-specific performance metrics and their empirical distributions. I perform a deep examination of the well-established multi-task kernel method and achieve theoretical and experimental contributions. Lastly, I propose a two-step modeling approach to multi-task modeling, …

Applications Of Machine Learning Algorithms In Materials Science And Bioinformatics, Mohammed Quazi

Mathematics & Statistics ETDs

The piezoelectric response has been a measure of interest in density functional theory (DFT) for micro-electromechanical systems (MEMS) since the inception of MEMS technology. Piezoelectric-based MEMS devices find wide applications in automobiles, mobile phones, healthcare devices, and silicon chips for computers, to name a few. Piezoelectric properties of doped aluminum nitride (AlN) have been under investigation in materials science for piezoelectric thin films because of its wide range of device applicability. In this research using rigorous DFT calculations, high throughput ab-initio simulations for 23 AlN alloys are generated.

This research is the first to report strong enhancements of piezoelectric properties …

Assessing The Reidentification Risks Posed By Deep Learning Algorithms Applied To Ecg Data, Arin Ghazarian, Jianwei Zheng, Daniele Struppa, Cyril Rakovski

Mathematics, Physics, and Computer Science Faculty Articles and Research

ECG (Electrocardiogram) data analysis is one of the most widely used and important tools in cardiology diagnostics. In recent years the development of advanced deep learning techniques and GPU hardware have made it possible to train neural network models that attain exceptionally high levels of accuracy in complex tasks such as heart disease diagnoses and treatments. We investigate the use of ECGs as biometrics in human identification systems by implementing state-of-the-art deep learning models. We train convolutional neural network models on approximately 81k patients from the US, Germany and China. Currently, this is the largest research project on ECG identification. …

Accountable Data: The Politics And Pragmatics Of Disclosure Datasets, Lindsay Poirier

Statistical and Data Sciences: Faculty Publications

This paper attends specifically to what I call "disclosure datasets"- tabular datasets produced in accordance with laws requiring various kinds of disclosure. For the purposes of this paper, the most significant defining feature of disclosure datasets is that they aggregate information produced and reported by the same institutions they are meant to hold accountable. Through a series of case studies of disclosure datasets in the United States, I specifically draw attention to two concerns with disclosure datasets: First, for disclosure datasets, there is often political and social mobilization around the definitions that determine reporting thresholds, which in turn implicates what …

A Large-Scale Sentiment Analysis Of Tweets Pertaining To The 2020 Us Presidential Election, Rao Hamza Ali, Gabriela Pinto, Evelyn Lawrie, Erik J. Linstead

Engineering Faculty Articles and Research

We capture the public sentiment towards candidates in the 2020 US Presidential Elections, by analyzing 7.6 million tweets sent out between October 31st and November 9th, 2020. We apply a novel approach to first identify tweets and user accounts in our database that were later deleted or suspended from Twitter. This approach allows us to observe the sentiment held for each presidential candidate across various groups of users and tweets: accessible tweets and accounts, deleted tweets and accounts, and suspended or inaccessible tweets and accounts. We compare the sentiment scores calculated for these groups and provide key insights into the …

Automatic Contact Tracing Using Bluetooth Low Energy Signals And Imu Sensor Readings, Suriyadeepan Ramamoorthy, Joyce Mahon, Michael O'Mahony, Jean Francois Itangayenda, Tendai Mukande, Tlamelo Makati

Other resources

In this report, we present our solution to the challenge provided by the SFI Centre for Machine Learning (ML-Labs) in which the distance between two phones needs to be estimated. It is a modified version of the NIST Too Close For Too Long (TC4TL) Challenge, as the time aspect is excluded. We propose a feature-based approach based on Bluetooth RSSI and IMU sensory data, that outperforms the previous state of the art by a significant margin, reducing the error down to 0.071. We perform an ablation study of our model that reveals interesting insights about the relationship between the distance …

Mobile Health Applications For Postpartum Depression Management: A Theory-Informed Analysis Of Change-Use-Engagement (Cue) Criteria In The Digital Environment, Alexandra Zingg, Laura Carter, Deevakar Rogith, Sudhakar Selvaraj, Amy Franklin, Sahiti Myneni

Faculty, Staff and Student Publications

Postpartum Depression (PPD) is the most common childbirth complication, with approximately 15% of postpartum women experiencing depression symptoms. Mobile applications have potential to expand delivery of mental health interventions. However, our understanding of how these tools engage women with PPD and facilitate positive behavioral changes is limited. In our paper, we analyze 15 commercial PPD applications to understand their role as facilitators of change, engagement, and sustained use. Applications reviewed contained an average of four theory-based behavioral change techniques, and highest patient engagement level reached was to empower patients through patient-generated data. Heuristic violations were identified in areas including user …

Using Hospital Bed Capacity Prediction During Covid-19 To Determine Feature Importance, Helene Barrera, Justin Ehly, Blake Freeman, Chris Papesh, Brad Blanchard

SMU Data Science Review

The COVID-19 pandemic has exacerbated existing hospital capacity limitations in the United States, causing hospitals in certain regions to hit maximum capacity. The purpose of this study is to investigate key features of COVID-19 related admissions to help create a higher level of public understanding and help guide healthcare management professionals and governments when considering preventive measures. The introduction of preventative measures and new regulations during the pandemic have led to the generation of multiple types of models and feature selection methods in the field of Machine Learning that are increasingly complicated. This study focuses on the exploration of feature …