Data Science Commons^™

Assessing The Reidentification Risks Posed By Deep Learning Algorithms Applied To Ecg Data, Arin Ghazarian, Jianwei Zheng, Daniele Struppa, Cyril Rakovski

Mathematics, Physics, and Computer Science Faculty Articles and Research

ECG (Electrocardiogram) data analysis is one of the most widely used and important tools in cardiology diagnostics. In recent years the development of advanced deep learning techniques and GPU hardware have made it possible to train neural network models that attain exceptionally high levels of accuracy in complex tasks such as heart disease diagnoses and treatments. We investigate the use of ECGs as biometrics in human identification systems by implementing state-of-the-art deep learning models. We train convolutional neural network models on approximately 81k patients from the US, Germany and China. Currently, this is the largest research project on ECG identification. …

Legislative Language For Success, Sanjana Gundala

Master's Theses

Legislative committee meetings are an integral part of the lawmaking process for local and state bills. The testimony presented during these meetings is a large factor in the outcome of the proposed bill. This research uses Natural Language Processing and Machine Learning techniques to analyze testimonies from California Legislative committee meetings from 2015-2016 in order to identify what aspects of a testimony makes it successful. A testimony is considered successful if the alignment of the testimony matches the bill outcome (alignment is "For" and the bill passes or alignment is "Against" and the bill fails). The process of finding what …

Computational Approaches To Facilitate Automated Interchange Between Music And Art, Rao Hamza Ali

Computational and Data Sciences (PhD) Dissertations

Recently, there has been a tremendous increase in generating and synthesizing music and art using various computational techniques. An area that is still under-researched, however, is how one medium can be converted into the other, while maintaining the overall aesthetics. Over the last few centuries, artists, composers, and scholars, have attempted to use substitute one form of art for the other: by proposing techniques where music notes are synonymous to colors, by inventing instruments that combine the aesthetics of music and visual art, and by incorporating the two media in live performances. A widely accepted computational approach, for the conversion, …

An Educator’S Perspective Of The Tidyverse, Mine Çetinkaya-Rundel, Johanna Hardin, Benjamin Baumer, Amelia Mcnamara, Nicholas J. Horton, Colin W. Rundel

Statistical and Data Sciences: Faculty Publications

Computing makes up a large and growing component of data science and statistics courses. Many of those courses, especially when taught by faculty who are statisticians by training, teach R as the programming language. A number of instructors have opted to build much of their teaching around use of the tidyverse. The tidyverse, in the words of its developers, “is a collection of R packages that share a high-level design philosophy and low-level grammar and data structures, so that learning one package makes it easier to learn the next” (Wickham et al. 2019). These shared principles have led to the …

Cancel Culture: Who Or What Will Be Next?, Christine Trumper

Honors Projects in Data Science

This paper utilizes Data Science and Applied Statistic techniques, to perform an analytical dive into Cancel Culture as it is referenced and used on Twitter. The research focuses on analyzing how Cancel Culture has affected the sentiment of Twitter, specifically how it impacts prominent topics in the media that have occurred between February 2021 to September 2021. The development of a topic and sentiment analysis will be based on 1,302,844 Tweets collected using Twitter’s API. Cancel Culture became popularized on social media in the past few years and there is little concrete information regarding its process and the demographics it …

Identifying Factors That Lead To Injury In The Nfl, Matthew Toner

Honors Projects in Data Science

This study hypothesizes that injury-causing factors can be identified through training machine learning models with NFL injury data. The machine learning process entailed web scraping, pre-processing, cleaning, modeling, and analyzing NFL injury data to identify these factors. The features used to model injuries included the following: games played, games started, weight, height, age, year, years of experience, starting position, and team. The four models used to model NFL injuries were Logistic Regression, Decision Trees, Random Forests, and Gradient Boosted Trees. The model with the best performance was the Gradient Boosted Trees model, with an F1 score of 0.508. In addition, …

Twitter's Role In An Increasingly Polarized Political Climate; A Look Into The 2020 Us Elections, Leanne Kendall

Honors Projects in Data Science

Amidst politically strained times, one might wonder what has cause such an exaggerated gap between the views of democrats and republicans. For years, research has suggested the US’s voting population is becoming increasingly politically polarized, with one of the causes being social media. This study's purpose is to understand more about the role that social media plays in the polarization of parties in the US. The study is comprised of the analysis of over 3,000,000 tweets from 9/22/2020 through 11/10/2020 that mention or are written by senate and presidential candidates. Natural language processing, network graphing, and sentiment analyses were utilized …

Autonomous, Long-Range, Sensor Emplacement Using Unmanned Aircraft Systems, Adam Plowcha, Justin Bradley, Jacob Hoberg, Thomas Ammon, Mark Nail, Brittany Duncan, Carrick Detweiler

School of Computing: Faculty Publications

Automated, in-ground sensor emplacement can significantly improve remote, terrestrial, data collection capabilities. Utilizing a multicopter, unmanned aircraft system (UAS) for this purpose allows sensor insertion with minimal disturbance to the target site or surrounding area. However, developing an emplacement mechanism for a small multicopter, autonomy to manage the target selection and implantation process, as well as long-range deployment are challenging to address. We have developed an autonomous, multicopter UAS that can implant subsurface sensor devices. We enhanced the UAS autopilot with autonomy for target and landing zone selection, as well as ensuring the sensor is implanted properly in the ground. …

Integrating Web Applications Into Popular Survey Platforms For Online Experiments, Benjamin Carter, Alessandro Del Ponte

Political Science Faculty Articles and Research

Research using custom-made web applications is burgeoning as scholars increasingly conduct their experiments online. We show how researchers can integrate their web applications into popular survey software such as Qualtrics in five simple steps and provide the full JavaScript code and screenshots. This procedure allows participants to seamlessly switch from Qualtrics to their web applications without leaving the survey platform. This integration has two benefits: (1) it eliminates the risk that participants inadvertently drop out of the survey while switching from the survey software to the web application and vice versa; and (2) it saves researchers the fees charged by …

Humanizing Computational Literature Analysis Through Art-Based Visualizations, Alexandria Leto

Electronic Theses and Dissertations

Inequalities in gender representation and characterization in fictional works are issues that have long been discussed by social scientists. This work addresses these inequalities with two interrelated components. First, it contributes a sentiment and word frequency analysis task focused on gender-specific nouns and pronouns in 15,000 fictional works taken from the online library, Project Gutenberg. This analysis allows for both quantifying and offering further insight on the nature of this disparity in gender representation. Then, the outcomes of the analysis are harnessed to explore novel data visualization formats using computational and studio art techniques. Our results call attention to the …

Towards Exchanging Wearable-Pghd With Ehrs: Developing A Standardized Information Model For Wearable-Based Patient Generated Health Data, Abdullahi Abubakar Kawu, Dympna O'Sullivan, Lucy Hederman

Articles

Wearables have become commonplace for tracking and making sense of patient lifestyle, wellbeing and health data. Most of this tracking is done by individuals outside of clinical settings, however some data from wearables may be useful in a clinical context. As such, wearables may be considered a prominent source of Patient Generated Health Data (PGHD). Studies have attempted to maximize the use of the data from wearables including integrating with Electronic Health Records (EHRs). However, usually a limited number of wearables are considered for integration and, in many cases, only one brand is investigated. In addition, we find limited studies …

Realtime Event Detection In Sports Sensor Data With Machine Learning, Mallory Cashman

Honors Theses and Capstones

Machine learning models can be trained to classify time series based sports motion data, without reliance on assumptions about the capabilities of the users or sensors. This can be applied to predict the count of occurrences of an event in a time period. The experiment for this research uses lacrosse data, collected in partnership with SPAITR - a UNH undergraduate startup developing motion tracking devices for lacrosse. Decision Tree and Support Vector Machine (SVM) models are trained and perform with high success rates. These models improve upon previous work in human motion event detection and can be used a reference …

Comparison Of Caregiver- And Child-Reported Quality Of Life In Children With Sleep-Disordered Breathing, Phoebe Kuo Yu, Kaitlyn Cook, Jiayan Liu, Raouf S. Amin, Craig Derkay, Lisa M. Elden, Susan L. Garetz, Alisha S. George, Sally Ibrahim, Stacey L. Ishman, Erin M. Kirkham, S. Kamal Naqvi, Jerilynn Radcliffe, Kristie R. Ross, Gopi B. Shah, Ignacio E. Tapia, H. Gerry Taylor, David A. Zopf, Susan Redline, Cristina M. Baldassari

Statistical and Data Sciences: Faculty Publications

Objective. Caregivers frequently report poor quality of life(QOL) in children with sleep-disordered breathing (SDB).Our objective is to assess the correlation between care-giver- and child-reported QOL in children with mild SDBand identify factors associated with differences between caregiver and child report.

Study Design. Analysis of baseline data from a multi-institutional randomized trialSetting. Pediatric Adenotonsillectomy Trial for Snoring, where children with mild SDB (obstructive apnea-hypopnea index\3) were randomized to observation or adenotonsillectomy.

Methods. The Pediatric Quality of Life Inventory (Peds QL)assessed baseline global QOL in participating children 5 to12 years old and their caregivers. Caregiver and child scores were compared. Multivariable regression …

Interpretable Machine Learning For Self-Service High-Risk Decision Making, Charles Recaido

All Master's Theses

This research contributes to interpretable machine learning via visual knowledge discovery in General Line Coordinates (GLC). The concepts of hyperblocks as interpretable dataset units and GLC are combined to create a visual self-service machine learning model. Two variants of GLC known as Dynamic Scaffold Coordinates (DSC) are proposed. DSC1 and DSC2 can map in a lossless manner multiple dataset attributes to a single two-dimensional (X, Y) Cartesian plane using a dynamic scaffolding graph construction algorithm.

Hyperblock analysis is used to determine visually appealing dataset attribute orders and to reduce line occlusion. It is shown that hyperblocks can generalize decision tree …

Classifying Blood Glucose Levels Through Noninvasive Features, Rishi Reddy

Graduate Theses, Dissertations, and Problem Reports (ETD)

Blood glucose monitoring is a key process in the prevention and management of certain chronic diseases, such as diabetes. Currently, glucose monitoring for those interested in their blood glucose levels are confronted with options that are primarily invasive and relatively costly. A growing topic of note is the development of non-invasive monitoring methods for blood glucose. This development holds a significant promise for improvement to the quality of life of a significant portion of the population and is overall met with great enthusiasm from the scientific community as well as commercial interest. This work aims to develop a potential pipeline …

Visualizing Features From Deep Neural Networks Trained On Alzheimer’S Disease And Few-Shot Learning Models For Alzheimer’S Disease, John Reeder

All Theses

Alzheimer’s disease is an incurable neural disease, usually affecting the elderly. The afflicted suffer from cognitive impairments that get dramatically worse at each stage. Previous research on Alzheimer’s disease analysis in terms of classification leveraged statistical models such as support vector machines. However, statistical models such as support vector machines train the from numerical data instead of medical images. Today, convolutional neural networks (CNN) are widely considered as the one which can achieve the state-of-the- art image classification performance. However, due to their black box nature, there can be reluctance amongst medical professionals for their use. On the other hand, …

Local Feature Selection For Multiple Instance Learning With Applications., Aliasghar Shahrjooihaghighi

Electronic Theses and Dissertations

Feature selection is a data processing approach that has been successfully and effectively used in developing machine learning algorithms for various applications. It has been proven to effectively reduce the dimensionality of the data and increase the accuracy and interpretability of machine learning algorithms. Conventional feature selection algorithms assume that there is an optimal global subset of features for the whole sample space. Thus, only one global subset of relevant features is learned. An alternative approach is based on the concept of Local Feature Selection (LFS), where each training sample can have its own subset of relevant features. Multiple Instance …

Pre-Earthquake Ionospheric Perturbation Identification Using Cses Data Via Transfer Learning, Pan Xiong, Cheng Long, Huiyu Zhou, Roberto Battiston, Angelo De Santis, Dimitar Ouzounov, Xuemin Zhang, Xuhui Shen

Mathematics, Physics, and Computer Science Faculty Articles and Research

During the lithospheric buildup to an earthquake, complex physical changes occur within the earthquake hypocenter. Data pertaining to the changes in the ionosphere may be obtained by satellites, and the analysis of data anomalies can help identify earthquake precursors. In this paper, we present a deep-learning model, SeqNetQuake, that uses data from the first China Seismo-Electromagnetic Satellite (CSES) to identify ionospheric perturbations prior to earthquakes. SeqNetQuake achieves the best performance [F-measure (F1) = 0.6792 and Matthews correlation coefficient (MCC) = 0.427] when directly trained on the CSES dataset with a spatial window centered on the earthquake epicenter with the Dobrovolsky …

Transfer-Learned Pruned Deep Convolutional Neural Networks For Efficient Plant Classification In Resource-Constrained Environments, Martinson Ofori

Masters Theses & Doctoral Dissertations

Traditional means of on-farm weed control mostly rely on manual labor. This process is time-consuming, costly, and contributes to major yield losses. Further, the conventional application of chemical weed control can be economically and environmentally inefficient. Site-specific weed management (SSWM) counteracts this by reducing the amount of chemical application with localized spraying of weed species. To solve this using computer vision, precision agriculture researchers have used remote sensing weed maps, but this has been largely ineffective for early season weed control due to problems such as solar reflectance and cloud cover in satellite imagery. With the current advances in artificial …

The Forestecology R Package For Fitting And Assessing Neighborhood Models Of The Effect Of Interspecific Competition On The Growth Of Trees, Albert Y. Kim, David N. Allen, Simon P. Couch

Statistical and Data Sciences: Faculty Publications

Neighborhood competition models are powerful tools to measure the effect of interspecific competition. Statistical methods to ease the application of these models are currently lacking. We present the forestecology package providing methods to (a) specify neighborhood competition models, (b) evaluate the effect of competitor species identity using permutation tests, and (cs) measure model performance using spatial cross-validation. Following Allen and Kim (PLoS One, 15, 2020, e0229930), we implement a Bayesian linear regression neighborhood competition model. We demonstrate the package's functionality using data from the Smithsonian Conservation Biology Institute's large forest dynamics plot, part of the ForestGEO global network of research …

Facilitating Team-Based Data Science: Lessons Learned From The Dsc-Wav Project, Chelsey Legacy, Andrew Zieffler, Benjamin S. Baumer, Valerie Barr, Nicholas J. Horton

Statistical and Data Sciences: Faculty Publications

While coursework provides undergraduate data science students with some relevant analytic skills, many are not given the rich experiences with data and computing they need to be successful in the workplace. Additionally, students often have limited exposure to team-based data science and the principles and tools of collaboration that are encountered outside of school. In this paper, we describe the DSC-WAV program, an NSF-funded data science workforce development project in which teams of undergraduate sophomores and juniors work with a local non-profit organization on a data-focused problem. To help students develop a sense of agency and improve confidence in their …

Infer: An R Package For Tidyverse-Friendly Statistical Inference, Simon P. Couch, Andrew P. Bray, Chester Ismay, Evgeni Chasnovski, B. Baumer, Mine Cetinkaya-Rundel

Statistical and Data Sciences: Faculty Publications

infer implements an expressive grammar to perform statistical inference that adheres to the tidyverse design framework (Wickham et al., 2019). Rather than providing methods for specific statistical tests, this package consolidates the principles that are shared among common hypothesis tests and confidence intervals into a set of four main verbs (functions), supplemented with many utilities to visualize and extract value from their outputs.

Enhancing Microbiome Host Disease Prediction With Variational Autoencoders, Celeste Manughian-Peter

Computational and Data Sciences (MS) Theses

Advancements in genetic sequencing methods for microbiomes in recent decades have permitted the collection of taxonomic and functional profiles of microbial communities, accelerating the discovery of the functional aspects of the microbiome and generating an increased interest among clinicians in applying these techniques with patients. This advancement has coincided with software and hardware improvements in the field of machine learning and deep learning. Combined, these advancements implicate further potential for progress in disease diagnosis and treatment in humans. The ability to classify a human microbiome profile into a disease category, and additionally identify the differentiating factors within the profile between …

A Configurable Social Network For Running Irb-Approved Experiments, Mihovil Mandic

Dartmouth College Undergraduate Theses

Our world has never been more connected, and the size of the social media landscape draws a great deal of attention from academia. However, social networks are also a growing challenge for the Institutional Review Boards concerned with the subjects’ privacy. These networks contain a monumental variety of personal information of almost 4 billion people, allow for precise social profiling, and serve as a primary news source for many users. They are perfect environments for influence operations that are becoming difficult to defend against. Motivated to study online social influence via IRB-approved experiments, we designed and implemented a flexible, scalable, …

Advancing The Ability To Predict Cognitive Decline And Alzheimer’S Disease Based On Genetic Variants Beyond Amyloid-Beta And Tau, Naveen Rawat

Master's Projects

A growing amount of neurodegenerative R&D is focused on identifying genomic- based explanations of AD that are beyond Amyloid-b and Tau. The proposed effort involves identifying some of the genomic variations, such as single nucleotide polymorphisms (SNPs), allele , chromosome, epigenetic contributors to MCI and AD that are beyond Aβ and Tau.

The project involves building a prediction model based on a support vector machine (SVM) classifier that takes into account the genomic variations and epigenetic factors to predict the early stage of mild cognitive impairment (MCI) and Alzheimer disease (AD). To achieve this, picking up important feature sets which …

Convolutional Neural Networks For Deflate Data Encoding Classification Of High Entropy File Fragments, Nehal Ameen

LSU New Orleans Theses and Dissertations

Data reconstruction is significantly improved in terms of speed and accuracy by reliable data encoding fragment classification. To date, work on this problem has been successful with file structures of low entropy that contain sparse data, such as large tables or logs. Classifying compressed, encrypted, and random data that exhibit high entropy is an inherently difficult problem that requires more advanced classification approaches. We explore the ability of convolutional neural networks and word embeddings to classify deflate data encoding of high entropy file fragments after establishing ground truth using controlled datasets. Our model is designed to either successfully classify file …

Machine Learning For Terminal Procedure Chart Change Detection, Anthony M. Marchiafava

LSU New Orleans Theses and Dissertations

Terminal Procedure Charts are a constantly updated and necessary tool for aircraft personnel to approach and take off from airport runways safely. Detecting changes within these charts is a time-consuming and laborious process. Here machine learning techniques were used to predict regions of change in charts based on detecting the charts image regions and comparing features extracted from those regions. Outlined are methodologies to detect differences between two separate charts to produce images with changed regions clearly indicated. Both more conventional computer vision and machine learning techniques were applied. For images with minor shifts, the proposed model is able to …

Prediction Of Financial Capacity Using Diffusion Compartment Imaging, Lok Yi Tai

Master's Projects

Financial Capacity (FC) is the ability to manage one’s financial affairs, which is essential for autonomy and independence particularly for aging adults. Since dementia develops gradually, it is often difficult to detect the early signs that this cognitive dysfunction is developing This project aims to use Neurite orientation dispersion and density imaging (NODDI) to identify the white matter tracts that are associated with FC. Diffusion Tensor Images (DTI) and T1 Magnetic Resonance Images (MRI) of 18 Alzheimer’s Disease (AD) subjects, 47 Mild Cognitive Impaired (MCI) subjects, and 193 healthy control (CN) are compared to neuropsychological tests. Orientation Dispersion Index (ODI) …

Spaceflight And The Differential Gene Expression Of Human Stem Cell-Derived Cardiomyocytes, Eugenie Zhu

Master's Projects

The National Aeronautics and Space Administration (NASA) has performed many experiments on the International Space Station (ISS) to further understand how conditions in space can affect life on Earth. This project analyzed GLDS-258, a gene set from NASA’s GeneLab repository which examines the impact of microgravity on human induced pluripotent stem-cell-derived cardiomyocytes (hiPSC-CMs). While many datasets have been run through NASA’s RNA-Seq Consensus Pipeline (RCP) to study differential gene expression in space, a Homo sapiens dataset has yet to be analyzed using the RCP. The aim of this project was to run the first Homo sapiens dataset, GLDS-258, through the …

Wildfire Risk Prediction For A Smart City, Rekha Rani

Master's Projects

Wildfires are uncontrolled fires that may lead to the destruction of biodiversity, soil fertility, and human resources. There is a need for timely detection and prediction of wildfires to minimize their disastrous effects. In this research, we propose a wildfire prediction model that relies on multi-criteria decision making (MCDM) to explicitly evaluates multiple conflicting criteria in decision making and weave the wildfire risks into the city’s resiliency plan. We incorporate fuzzy set theory to handle imprecision and uncertainties. In the process, we create a new data set that includes California cities’ weather, vegetation, topography, and population density records. The model …