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Full-Text Articles in Theory and Algorithms
New Methods For Deep Learning Based Real-Valued Inter-Residue Distance Prediction, Jacob Barger
New Methods For Deep Learning Based Real-Valued Inter-Residue Distance Prediction, Jacob Barger
Theses
Background: Much of the recent success in protein structure prediction has been a result of accurate protein contact prediction--a binary classification problem. Dozens of methods, built from various types of machine learning and deep learning algorithms, have been published over the last two decades for predicting contacts. Recently, many groups, including Google DeepMind, have demonstrated that reformulating the problem as a multi-class classification problem is a more promising direction to pursue. As an alternative approach, we recently proposed real-valued distance predictions, formulating the problem as a regression problem. The nuances of protein 3D structures make this formulation appropriate, allowing predictions …
Applying Imitation And Reinforcement Learning To Sparse Reward Environments, Haven Brown
Applying Imitation And Reinforcement Learning To Sparse Reward Environments, Haven Brown
Computer Science and Computer Engineering Undergraduate Honors Theses
The focus of this project was to shorten the time it takes to train reinforcement learning agents to perform better than humans in a sparse reward environment. Finding a general purpose solution to this problem is essential to creating agents in the future capable of managing large systems or performing a series of tasks before receiving feedback. The goal of this project was to create a transition function between an imitation learning algorithm (also referred to as a behavioral cloning algorithm) and a reinforcement learning algorithm. The goal of this approach was to allow an agent to first learn to …
Graph Classification With Kernels, Embeddings And Convolutional Neural Networks, Monica Golahalli Seenappa, Katerina Potika, Petros Potikas
Graph Classification With Kernels, Embeddings And Convolutional Neural Networks, Monica Golahalli Seenappa, Katerina Potika, Petros Potikas
Faculty Publications, Computer Science
In the graph classification problem, given is a family of graphs and a group of different categories, and we aim to classify all the graphs (of the family) into the given categories. Earlier approaches, such as graph kernels and graph embedding techniques have focused on extracting certain features by processing the entire graph. However, real world graphs are complex and noisy and these traditional approaches are computationally intensive. With the introduction of the deep learning framework, there have been numerous attempts to create more efficient classification approaches. We modify a kernel graph convolutional neural network approach, that extracts subgraphs (patches) …
Development Of Machine Learning Tutorials For R, John Pintar
Development Of Machine Learning Tutorials For R, John Pintar
All Undergraduate Theses and Capstone Projects
Machine learning (ML) techniques developed in computer science have revolutionized nearly every sector of industry. Despite the prevalence and usefulness of ML, students outside of computer science rarely receive training in ML. Students frequently receive training in statistical analysis, often using the software package R, which is free, open source, and has additional downloadable modules. A popular module is the ML package caret, which contains 238 different ML algorithms, each with 0-9 hyperparameters. caret is powerful, flexible, and provides consistent syntax across algorithms. In the hands of an experienced practitioner, this tunability is welcomed and can increase accuracy. However, when …
Learning To Map The Visual And Auditory World, Tawfiq Salem
Learning To Map The Visual And Auditory World, Tawfiq Salem
Theses and Dissertations--Computer Science
The appearance of the world varies dramatically not only from place to place but also from hour to hour and month to month. Billions of images that capture this complex relationship are uploaded to social-media websites every day and often are associated with precise time and location metadata. This rich source of data can be beneficial to improve our understanding of the globe. In this work, we propose a general framework that uses these publicly available images for constructing dense maps of different ground-level attributes from overhead imagery. In particular, we use well-defined probabilistic models and a weakly-supervised, multi-task training …
Machine Learning In Wireless Sensor Networks: Algorithms, Strategies, And Applications, Mohammad Abu Alsheikh, Shaowei Lin, Dusit Niyato, Hwee-Pink Tan
Machine Learning In Wireless Sensor Networks: Algorithms, Strategies, And Applications, Mohammad Abu Alsheikh, Shaowei Lin, Dusit Niyato, Hwee-Pink Tan
Research Collection School Of Computing and Information Systems
Wireless sensor networks (WSNs) monitor dynamic environments that change rapidly over time. This dynamic behavior is either caused by external factors or initiated by the system designers themselves. To adapt to such conditions, sensor networks often adopt machine learning techniques to eliminate the need for unnecessary redesign. Machine learning also inspires many practical solutions that maximize resource utilization and prolong the lifespan of the network. In this paper, we present an extensive literature review over the period 2002-2013 of machine learning methods that were used to address common issues in WSNs. The advantages and disadvantages of each proposed algorithm are …