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Full-Text Articles in Databases and Information Systems

Rapport: Semantic-Sensitive Namespace Management In Large-Scale File Systems, Yu Hua, Hong Jiang, Yifeng Zhu, Dan Feng Apr 2010

Rapport: Semantic-Sensitive Namespace Management In Large-Scale File Systems, Yu Hua, Hong Jiang, Yifeng Zhu, Dan Feng

CSE Technical Reports

Explosive growth in volume and complexity of data exacerbates the key challenge to effectively and efficiently manage data in a way that fundamentally improves the ease and efficacy of their use. Existing large-scale file systems rely on hierarchically structured namespace that leads to severe performance bottlenecks and renders it impossible to support real-time queries on multi-dimensional attributes. This paper proposes a novel semantic-sensitive scheme, called Rapport, to provide dynamic and adaptive namespace management and support complex queries. The basic idea is to build files’ namespace by utilizing their semantic correlation and exploiting dynamic evolution of attributes to support namespace management. …


Genbank, Dennis A. Benson, Ilene Karasch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers Jan 2010

Genbank, Dennis A. Benson, Ilene Karasch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers

Harold W. Manter Laboratory: Library Materials

GenBank(R) is a comprehensive database that contains publicly available nucleotide sequences for more than 380,000 organisms named at the genus level or lower, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system that integrates data …