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Articles 1 - 5 of 5
Full-Text Articles in Databases and Information Systems
Design And Implementation Of A Stand-Alone Tool For Metabolic Simulations, Milad Ghiasi Rad
Design And Implementation Of A Stand-Alone Tool For Metabolic Simulations, Milad Ghiasi Rad
Department of Computer Science and Engineering: Dissertations, Theses, and Student Research
In this thesis, we present the design and implementation of a stand-alone tool for metabolic simulations. This system is able to integrate custom-built SBML models along with external user’s input information and produces the estimation of any reactants participating in the chain of the reactions in the provided model, e.g., ATP, Glucose, Insulin, for the given duration using numerical analysis and simulations. This tool offers the food intake arguments in the calculations to consider the personalized metabolic characteristics in the simulations. The tool has also been generalized to take into consideration of temporal genomic information and be flexible for simulation …
Querying And Visualization Of Moving Objects Using Constraint Databases, Semere M. Woldemariam
Querying And Visualization Of Moving Objects Using Constraint Databases, Semere M. Woldemariam
Department of Computer Science and Engineering: Dissertations, Theses, and Student Research
Good querying and visualization of moving objects and their trajectories is still an open problem. This thesis investigates three types of moving objects. First, projectiles, whose parabolic motion is difficult to represent. Second, moving objects that slide down a slope. The representation of these objects is challenging because of their accelerating motion. Third, the motion of migrating animals. The motion of migrating animals is challenging because it also involves some spatio-temporal interpolation. The thesis shows a solution to these problems using ideas from physics and an implementation in the MLPQ constraint databases system. The MLPQ implementation enables several complex spatio-temporal …
Towards Building A Review Recommendation System That Trains Novices By Leveraging The Actions Of Experts, Shilpa Khanal
Towards Building A Review Recommendation System That Trains Novices By Leveraging The Actions Of Experts, Shilpa Khanal
Department of Computer Science and Engineering: Dissertations, Theses, and Student Research
Online reviews increase consumer visits, increase the time spent on the website, and create a sense of community among the frequent shoppers. Because of the importance of online reviews, online retailers such as Amazon.com and eOpinions provide detailed guidelines for writing reviews. However, though these guidelines provide instructions on how to write reviews, reviewers are not provided instructions for writing product-specific reviews. As a result, poorly-written reviews are abound and a customer may need to scroll through a large number of reviews, which could be up to 6000 pixels down from the top of the page, in order to find …
Data Mining Of Protein Databases, Christopher Assi
Data Mining Of Protein Databases, Christopher Assi
Department of Computer Science and Engineering: Dissertations, Theses, and Student Research
Data mining of protein databases poses special challenges because many protein databases are non-relational whereas most data mining and machine learning algorithms assume the input data to be a relational database. Protein databases are non-relational mainly because they often contain set data types. We developed new data mining algorithms that can restructure non-relational protein databases so that they become relational and amenable for various data mining and machine learning tools. We applied the new restructuring algorithms to a pancreatic protein database. After the restructuring, we also applied two classification methods, such as decision tree and SVM classifiers and compared their …
Adaptive Interpolation Algorithms For Temporal-Oriented Datasets, Jun Gao
Adaptive Interpolation Algorithms For Temporal-Oriented Datasets, Jun Gao
Department of Computer Science and Engineering: Dissertations, Theses, and Student Research
Spatiotemporal datasets can be classified into two categories: temporal-oriented and spatial-oriented datasets depending on whether missing spatiotemporal values are closer to the values of its temporal or spatial neighbors. We present an adaptive spatiotemporal interpolation model that can estimate the missing values in both categories of spatiotemporal datasets. The key parameters of the adaptive spatiotemporal interpolation model can be adjusted based on experience.