Non-linear Dynamics Commons^™

Multiscale Modelling Of Brain Networks And The Analysis Of Dynamic Processes In Neurodegenerative Disorders, Hina Shaheen

Theses and Dissertations (Comprehensive)

The complex nature of the human brain, with its intricate organic structure and multiscale spatio-temporal characteristics ranging from synapses to the entire brain, presents a major obstacle in brain modelling. Capturing this complexity poses a significant challenge for researchers. The complex interplay of coupled multiphysics and biochemical activities within this intricate system shapes the brain's capacity, functioning within a structure-function relationship that necessitates a specific mathematical framework. Advanced mathematical modelling approaches that incorporate the coupling of brain networks and the analysis of dynamic processes are essential for advancing therapeutic strategies aimed at treating neurodegenerative diseases (NDDs), which afflict millions of …

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …

Thermodynamic Laws Of Billiards-Like Microscopic Heat Conduction Models, Ling-Chen Bu

Doctoral Dissertations

In this thesis, we study the mathematical model of one-dimensional microscopic heat conduction of gas particles, applying both both analytical and numerical approaches. The macroscopic law of heat conduction is the renowned Fourier’s law J = −k∇T, where J is the local heat flux density, T(x, t) is the temperature gradient, and k is the thermal conductivity coefficient that characterizes the material’s ability to conduct heat. Though Fouriers’s law has been discovered since 1822, the thorough understanding of its microscopic mechanisms remains challenging [3] (2000). We assume that the microscopic model of heat conduction is a hard ball system. The …

Rigid Body Constrained Motion Optimization And Control On Lie Groups And Their Tangent Bundles, Brennan S. Mccann

Doctoral Dissertations and Master's Theses

Rigid body motion requires formulations where rotational and translational motion are accounted for appropriately. Two Lie groups, the special orthogonal group SO(3) and the space of quaternions H, are commonly used to represent attitude. When considering rigid body pose, that is spacecraft position and attitude, the special Euclidean group SE(3) and the space of dual quaternions DH are frequently utilized. All these groups are Lie groups and Riemannian manifolds, and these identifications have profound implications for dynamics and controls. The trajectory optimization and optimal control problem on Riemannian manifolds presents significant opportunities for theoretical development. Riemannian optimization is an attractive …

Complex-Valued Approach To Kuramoto-Like Oscillators, Jacqueline Bao Ngoc Doan

Electronic Thesis and Dissertation Repository

The Kuramoto Model (KM) is a nonlinear model widely used to model synchrony in a network of oscillators – from the synchrony of the flashing fireflies to the hand clapping in an auditorium. Recently, a modification of the KM (complex-valued KM) was introduced with an analytical solution expressed in terms of a matrix exponential, and consequentially, its eigensystem. Remarkably, the analytical KM and the original KM bear significant similarities, even with phase lag introduced, despite being determined by distinct systems. We found that this approach gives a geometric perspective of synchronization phenomena in terms of complex eigenmodes, which in turn …

Machine Learning-Based Data And Model Driven Bayesian Uncertanity Quantification Of Inverse Problems For Suspended Non-Structural System, Zhiyuan Qin

All Dissertations

Inverse problems involve extracting the internal structure of a physical system from noisy measurement data. In many fields, the Bayesian inference is used to address the ill-conditioned nature of the inverse problem by incorporating prior information through an initial distribution. In the nonparametric Bayesian framework, surrogate models such as Gaussian Processes or Deep Neural Networks are used as flexible and effective probabilistic modeling tools to overcome the high-dimensional curse and reduce computational costs. In practical systems and computer models, uncertainties can be addressed through parameter calibration, sensitivity analysis, and uncertainty quantification, leading to improved reliability and robustness of decision and …

On The Spatial Modelling Of Biological Invasions, Tedi Ramaj

Electronic Thesis and Dissertation Repository

We investigate problems of biological spatial invasion through the use of spatial modelling. We begin by examining the spread of an invasive weed plant species through a forest by developing a system of partial differential equations (PDEs) involving an invasive weed and a competing native plant species. We find that extinction of the native plant species may be achieved by increasing the carrying capacity of the forest as well as the competition coefficient between the species. We also find that the boundary conditions exert long-term control on the biomass of the invasive weed and hence should be considered when implementing …

Period Doubling Cascades From Data, Alexander Berliner

Undergraduate Honors Theses

Orbit diagrams of period doubling cascades represent systems going from periodicity to chaos. Here, we investigate whether a Gaussian process regression can be used to approximate a system from data and recover asymptotic dynamics in the orbit diagrams for period doubling cascades. To compare the orbits of a system to the approximation, we compute the Wasserstein metric between the point clouds of their obits for varying bifurcation parameter values. Visually comparing the period doubling cascades, we note that the exact bifurcation values may shift, which is confirmed in the plots of the Wasserstein distance. This has implications for studying dynamics …

Role Of Inhibition And Spiking Variability In Ortho- And Retronasal Olfactory Processing, Michelle F. Craft

Theses and Dissertations

Odor perception is the impetus for important animal behaviors, most pertinently for feeding, but also for mating and communication. There are two predominate modes of odor processing: odors pass through the front of nose (ortho) while inhaling and sniffing, or through the rear (retro) during exhalation and while eating and drinking. Despite the importance of olfaction for an animal’s well-being and specifically that ortho and retro naturally occur, it is unknown whether the modality (ortho versus retro) is transmitted to cortical brain regions, which could significantly instruct how odors are processed. Prior imaging studies show different …

Dynamic Parameter Estimation From Partial Observations Of The Lorenz System, Eunice Ng

Theses and Dissertations

Recent numerical work of Carlson-Hudson-Larios leverages a nudging-based algorithm for data assimilation to asymptotically recover viscosity in the 2D Navier-Stokes equations as partial observations on the velocity are received continuously-in-time. This "on-the-fly" algorithm is studied both analytically and numerically for the Lorenz equations in this thesis.

Numerical Simulations Of Nonlinear Waves And Their Stability: Stokes Waves And Nonlinear Schroedinger Equation, Anastassiya Semenova

Mathematics & Statistics ETDs

The present work offers an investigation of dynamics and stability of nonlinear waves in Hamiltonian systems. The first part of the manuscript discusses the classical problem of water waves on the surface of an ideal fluid in 2D. We demonstrate how to construct the Stokes waves, and how to apply a continuation method to find waves in close vicinity to the limiting Stokes wave. We provide new insight into the stability of the Stokes waves by identifying previously inaccessible branches of instability in the equations of motion for the fluid. We provide numerical evidence that pairs of unstable eigenvalues of …

The Long-Run Effects Of Tropical Cyclones On Infant Mortality, Isabel Miranda

Master's Theses

In the United States alone, each tropical cyclone causes an average of $14.6 billion worth of damages. In addition to the destruction of physical infrastructure, natural disasters also negatively impact human capital formation. These losses are often more difficult to observe, and therefore, are over looked when quantifying the true costs of natural disasters. One particular effect is an increase in infant mortality rates, an important indicator of a country’s general socioeconomic level. This paper utilizes a model created by Anttila-Hughes and Hsiang, that takes advantage of annual variation in tropical cyclones using annual spatial average maximum wind speeds and …

Mathematical Models: The Lanchester Equations And The Zombie Apocalypse, Hailey Bauer

Undergraduate Theses and Capstone Projects

This research study used mathematical models to analyze and depicted specific battle situations and the outcomes of the zombie apocalypse. The original models that predicted warfare were the Lanchester models, while the zombie apocalypse models were fictional expansions upon mathematical models used to examine infectious diseases. In this paper, I analyzed and compared different mathematical models by examining each model’s set of assumptions and the impact of the change in variables on the population classes. The purpose of this study was to understand the basics of the discrete dynamical systems and to determine the similarities between imaginary and realistic models. …

An Inference-Driven Branch And Bound Optimization Strategy For Planning Ambulance Services, Kevin Mcdaniel

Theses, Dissertations and Capstones

Strategic placement of ambulances is important to the efficient functioning of emergency services. As part of an ongoing collaboration with Wayne County 911, we developed a strategy to optimize the placement of ambulances throughout Wayne County based on de-identified call and response data from 2016 and 2017. The primary goals of the optimization were minimizing annual operating cost and mean response time, as well as providing a constructive solution that could naturally evolve from the existing plan. This thesis details the derivation and implementation of one of the optimization strategies used in this project. It is based on parametric statistical …

Control Theory: The Double Pendulum Inverted On A Cart, Ian J P Crowe-Wright

Mathematics & Statistics ETDs

In this thesis the Double Pendulum Inverted on a Cart (DPIC) system is modeled using the Euler-Lagrange equation for the chosen Lagrangian, giving a second-order nonlinear system. This system can be approximated by a linear first-order system in which linear control theory can be used. The important definitions and theorems of linear control theory are stated and proved to allow them to be utilized on a linear version of the DPIC system. Controllability and eigenvalue placement for the linear system are shown using MATLAB. Linear Optimal control theory is likewise explained in this section and its uses are applied to …

Simulating The Electrical Properties Of Random Carbon Nanotube Networks Using A Simple Model Based On Percolation Theory, Roberto Abril Valenzuela

Physics

Carbon nanotubes (CNTs) have been subject to extensive research towards their possible applications in the world of nanoelectronics. The interest in carbon nanotubes originates from their unique variety of properties useful in nanoelectronic devices. One key feature of carbon nanotubes is that the chiral angle at which they are rolled determines whether the tube is metallic or semiconducting. Of main interest to this project are devices containing a thin film of randomly arranged carbon nanotubes, known as carbon nanotube networks. The presence of semiconducting tubes in a CNT network can lead to a switching effect when the film is electro-statically …

Physical Applications Of The Geometric Minimum Action Method, George L. Poppe Jr.

Dissertations, Theses, and Capstone Projects

This thesis extends the landscape of rare events problems solved on stochastic systems by means of the \textit{geometric minimum action method} (gMAM). These include partial differential equations (PDEs) such as the real Ginzburg-Landau equation (RGLE), the linear Schroedinger equation, along with various forms of the nonlinear Schroedinger equation (NLSE) including an application towards an ultra-short pulse mode-locked laser system (MLL).

Additionally we develop analytical tools that can be used alongside numerics to validate those solutions. This includes the use of instanton methods in deriving state transitions for the linear Schroedinger equation and the cubic diffusive NLSE.

These analytical solutions are …

Near-Optimal Control Of Switched Systems With Continuous-Time Dynamics Using Approximate Dynamic Programming, Tohid Sardarmehni

Mechanical Engineering Research Theses and Dissertations

Optimal control is a control method which provides inputs that minimize a performance index subject to state or input constraints [58]. The existing solutions for finding the exact optimal control solution such as Pontryagin’s minimum principle and dynamic programming suffer from curse of dimensionality in high order dynamical systems. One remedy for this problem is finding near optimal solution instead of the exact optimal solution to avoid curse of dimensionality [31]. A method for finding the approximate optimal solution is through Approximate Dynamic Programming (ADP) methods which are discussed in the subsequent chapters.

In this dissertation, optimal switching in switched …

Theoretical Analysis Of Nonlinear Differential Equations, Emily Jean Weymier

Electronic Theses and Dissertations

Nonlinear differential equations arise as mathematical models of various phenomena. Here, various methods of solving and approximating linear and nonlinear differential equations are examined. Since analytical solutions to nonlinear differential equations are rare and difficult to determine, approximation methods have been developed. Initial and boundary value problems will be discussed. Several linear and nonlinear techniques to approximate or solve the linear or nonlinear problems are demonstrated. Regular and singular perturbation theory and Magnus expansions are our particular focus. Each section offers several examples to show how each technique is implemented along with the use of visuals to demonstrate the accuracy, …

Application Of Symplectic Integration On A Dynamical System, William Frazier

Electronic Theses and Dissertations

Molecular Dynamics (MD) is the numerical simulation of a large system of interacting molecules, and one of the key components of a MD simulation is the numerical estimation of the solutions to a system of nonlinear differential equations. Such systems are very sensitive to discretization and round-off error, and correspondingly, standard techniques such as Runge-Kutta methods can lead to poor results. However, MD systems are conservative, which means that we can use Hamiltonian mechanics and symplectic transformations (also known as canonical transformations) in analyzing and approximating solutions. This is standard in MD applications, leading to numerical techniques known as symplectic …

Orbital Stability Results For Soliton Solutions To Nonlinear Schrödinger Equations With External Potentials, Joseph B. Lindgren

Theses and Dissertations--Mathematics

For certain nonlinear Schroedinger equations there exist solutions which are called solitary waves. Addition of a potential $V$ changes the dynamics, but for small enough $||V||_{L^\infty}$ we can still obtain stability (and approximately Newtonian motion of the solitary wave's center of mass) for soliton-like solutions up to a finite time that depends on the size and scale of the potential $V$. Our method is an adaptation of the well-known Lyapunov method.

For the sake of completeness, we also prove long-time stability of traveling solitons in the case $V=0$.

Nonlinear Harmonic Modes Of Steel Strings On An Electric Guitar, Joel Wenrich

Senior Theses

Steel strings used on electric and acoustic guitars are non-ideal oscillators that can produce imperfect intonation. According to theory, this intonation should be a function of the bending stiffness of the string, which is related to the dimensions of length and thickness of the string. To test this theory, solid steel strings of three different linear densities were analyzed using an oscilloscope and a Fast Fourier Transform function. We found that strings exhibited more drastic nonlinear harmonic behavior as their effective length was shortened and as linear density increased.

Topological Data Analysis For Systems Of Coupled Oscillators, Alec Dunton

HMC Senior Theses

Coupled oscillators, such as groups of fireflies or clusters of neurons, are found throughout nature and are frequently modeled in the applied mathematics literature. Earlier work by Kuramoto, Strogatz, and others has led to a deep understanding of the emergent behavior of systems of such oscillators using traditional dynamical systems methods. In this project we outline the application of techniques from topological data analysis to understanding the dynamics of systems of coupled oscillators. This includes the examination of partitions, partial synchronization, and attractors. By looking for clustering in a data space consisting of the phase change of oscillators over a …

Mathematical Modeling And Optimal Control Of Alternative Pest Management For Alfalfa Agroecosystems, Cara Sulyok

Mathematics Honors Papers

This project develops mathematical models and computer simulations for cost-effective and environmentally-safe strategies to minimize plant damage from pests with optimal biodiversity levels. The desired goals are to identify tradeoffs between costs, impacts, and outcomes using the enemies hypothesis and polyculture in farming. A mathematical model including twelve size- and time-dependent parameters was created using a system of non-linear differential equations. It was shown to accurately fit results from open-field experiments and thus predict outcomes for scenarios not covered by these experiments.

The focus is on the application to alfalfa agroecosystems where field experiments and data were conducted and provided …

Discrete Nonlinear Planar Systems And Applications To Biological Population Models, Shushan Lazaryan, Nika Lazaryan, Nika Lazaryan

Theses and Dissertations

We study planar systems of difference equations and applications to biological models of species populations. Central to the analysis of this study is the idea of folding - the method of transforming systems of difference equations into higher order scalar difference equations. Two classes of second order equations are studied: quadratic fractional and exponential.

We investigate the boundedness and persistence of solutions, the global stability of the positive fixed point and the occurrence of periodic solutions of the quadratic rational equations. These results are applied to a class of linear/rational systems that can be transformed into a quadratic fractional equation …

Relative Equilibria Of Isosceles Triatomic Molecules In Classical Approximation, Damaris Miriam Mckinley

Theses and Dissertations (Comprehensive)

In this thesis we study relative equilibria of di-atomic and isosceles tri-atomic molecules in classical approximations with repulsive-attractive interaction. For di-atomic systems we retrieve well-known results. The main contribution consists of the study of the existence and stability of relative equilibria in a three-atom system formed by two identical atoms of mass $m$ and a third of mass $m_3$, constrained in an isosceles configuration at all times.

Given the shape of the binary potential only, we discuss the existence of equilibria and relative equilibria. We represent the results in the form of energy-momentum diagrams. We find that fixing the masses …

Viscosity Dependence Of Faraday Wave Formation Thresholds, Lisa Michelle Slaughter

Physics

This experiment uses an electromagnetic shaker to produce standing wave patterns on the surface of a vertically oscillating sample of silicon liquid. These surface waves, known as Faraday waves, form shapes such as squares, lines, and hexagons. They are known to be dependent upon the frequency and amplitude of the forcing as well as on the viscosity and depth of the liquid in the dish. At a depth of 4mm and for various silicon liquids having kinematic viscosities of 10, 20, and 38 cSt, we determined the acceleration at which patterns form for frequencies between 10 and 60 Hz. For …

Field Control Of The Surface Electroclinic Effect In Liquid Crystal Displays, Dana Hipolite

Physics

Liquid crystals (LCs) are a fascinating class of materials exhibiting a range of phases intermediate between liquid and crystalline. Smectic LCs consist of elongated molecules arranged in a periodic stack (along z) of liquid like layers. In the smectic-A (Sm-A) phase, the average molecular long axis (director) points along z. In the smectic-C (Sm-C) phase, it is tilted relative to z, thus picking out a special direction within the layers. Typically, the Sm-A* to Sm- C* transition will occur as temperature is decreased. In chiral smectics (Sm-*A or Sm-C*) it is possible to induce director titling (i.e. the Sm-C* phase) …

Welfare Versus Stability In "Stabilizing An Unstable Economy": A Minskyan Growth Model, Stergios Mentesidis

Senior Projects Spring 2012

The paper focuses on Minsky's financial fragility hypothesis incorporated in a growth model and investigates whether an inherently unstable economy can be stabilized by a big and proactive government. Using dynamical systems theory and expanding a supply-driven growth model developed by Lin, Day and Tse (1992), the paper explores how different government spending programs and financing paths can affect the growth, as well as the stability of a capitalist economy. The results and implications of the new frameworks are analyzed, using analytical and numerical methods of bifurcation, to examine the dependence of optimal government intervention on the economic environment. The …

Finding The Beat In Music: Using Adaptive Oscillators, Kate M. Burgers

HMC Senior Theses

The task of finding the beat in music is simple for most people, but surprisingly difficult to replicate in a robot. Progress in this problem has been made using various preprocessing techniques (Hitz 2008; Tomic and Janata 2008). However, a real-time method is not yet available. Methods using a class of oscillators called relay relaxation oscillators are promising. In particular, systems of forced Hopf oscillators (Large 2000; Righetti et al. 2006) have been used with relative success. This work describes current methods of beat tracking and develops a new method that incorporates the best ideas from each existing method and …