Dynamic Systems Commons^™

A Categorical Framework For Modeling Genetic Drift, Taylor G. Mendes

Rose-Hulman Undergraduate Mathematics Journal

Genetic drift describes changes in allele frequencies that arise from chance sampling in finite populations. This paper develops a categorical framework for organizing the structural features of drift. Population states are modeled as objects, evolutionary transitions as morphisms, reversible transitions as groupoid morphisms, and structure-preserving comparisons between models as functors. Group actions are used to describe deterministic evolutionary operators such as mutation and selection, while orbits and fixed points identify reachable allele-frequency states and stable absorbing outcomes. Universal properties are then used to describe drift as a coherence condition connecting stochastic transitions with deterministic evolutionary maps. The resulting framework complements …

A Professional Development Course On Data-Driven Dynamical Systems At A Primarily Undergraduate Institution: Part A - Scientific Content, Alessandro M. Selvitella, Jeffrey R. Anderson

CODEE Journal

In the age of data-driven decision making, ordinary differential equations (ODEs) remain a powerful and interpretable framework for modeling dynamic processes, especially when integrated with modern tools from statistical learning and data-driven dynamical systems. Yet, general undergraduate and graduate curricula do not typically address key opportunities in data-driven dynamical systems.

This first paper in a series focuses on the mathematical and methodological core of a professional development course first developed in the academic year 2025-2026 at a Primarily Undergraduate Institution, Purdue University Fort Wayne. The curriculum developed in this course emphasized how regression, regularization, and sparse identification can be used …

Irreversible K-Threshold Dynamics On Corona And Base-B Corona Product Graphs, Eric J. Moon, Soumya Bhoumik, Paul Flesher

SACAD: Scholarly Activities

This poster studies the irreversible k-threshold process on corona-type graph products, where a vertex becomes colored once at least k of its neighbors are colored and then remains colored permanently. We focus on corona, double corona, and base-b corona product graphs built from cycles and complete graphs, with particular attention to how graph structure affects complete activation from a minimum seed set.

A generalized reduction lemma is used to relate threshold dynamics on layered corona graphs to smaller residual graphs, yielding explicit formulas for the irreversible k-threshold conversion number on both corona and double corona families. The …

Exploring The Dynamics Of Romantic Relationships Through The Lens Of Prem Rog, Umang Jain, Dheeraj Sharma, Pranay Goswami, Kuldeep Malik

Journal of Humanistic Mathematics

Romantic relationships are dynamic events that begin, grow, and frequently remain for a long time in a stagnant or fluctuating state until possibly dissipating. Although they are unquestionably the most significant dynamic events in our lives, dynamic systems theory has only recently included them in its formal framework. Without a mathematical model, it would be impossible to analyze and comprehend the dynamics because, in general, love stories are too brief to allow things to stabilize and are affected by the ups and downs of the surrounding community. In this paper, we set up models made up of four ordinary differential …

Stability Analysis Of Thermohaline Convection With A Time-Varying Shear Flow Using The Lyapunov Method, Kalin Kochnev

Honors Scholar Theses

This work applies the Lyapunov method to identify instabilities and compute the growth rate of a linear time-varying system. The linear system studied describes cold fresh water on top of hot salty water with a periodically time-varying background shear flow. A time-dependent weighting matrix is employed to construct a Lyapunov function candidate. The resulting linear matrix inequalities are discretized in time using the forward Euler method. As the number of temporal discretization points increases, the growth rate predicted by the Lyapunov method or Floquet theory, used for comparison, will converge to the same value obtained from numerical simulations. Furthermore, the …

Math Meets Climate: The Energy Balance Model, Maria I. Sanchez Muniz

Open Educational Resources

This assignment introduces students to the mathematics of Earth’s climate through the classical energy balance model. Students analyze how incoming solar radiation, outgoing thermal radiation, and temperature-dependent albedo interact to determine Earth’s equilibrium temperature. Using analytical calculations and computational tools, students identify equilibrium states, assess their stability, and interpret the results through the lens of dynamical systems and bifurcation theory. The activity builds conceptual understanding of climate feedbacks, greenhouse effects, and tipping behavior using a transparent, one-variable model. Designed for applied mathematics and interdisciplinary STEM courses, this assignment emphasizes computation, physical interpretation, and real-world relevance. It is released as a …

Understanding Enso Through Mathematical Models, Maria I. Sanchez Muniz

Open Educational Resources

This assignment introduces students to conceptual models of the El Niño–Southern Oscillation (ENSO) and guides them through a structured investigation of their physical and mathematical foundations. Students analyze the recharge–oscillator and delayed–oscillator frameworks, explore how differential equations capture ocean–atmosphere interactions, and evaluate parameter-driven changes in oscillatory behavior. A key component of the work is the guided use of generative AI as a research tool: students employ AI models to locate peer-reviewed literature, interrogate model extensions, and refine their understanding of complex mechanisms, while synthesizing all final explanations in their own words. By blending classical climate modeling with modern AI-supported inquiry, …

Universal Systems Simulation Via Constraint Hypergraphs With Applications To Digital Twins, John Morris

All Dissertations

The characterization of systems encompasses a variety of modeling frameworks designed to capture specific behaviors and components of various system domains. Whatever the framework, the core elements of a system representation are the information of the system and a description of how that information is related. The relations in deterministic systems are functions, which, when composed to form executable processes, can be used to simulate system data. A declarative modeling framework is one that encodes mechanisms for preparing these simulations within the model structure, allowing an external agent to form the execution processes required for a given context. To date, …

Analysis Of Systematic Trade-Offs Between Military And Healthcare Expenditure Alongside Gdp Growth Of Select Asian And Western Exporting Economies In The 21st Century, Rahul Balamurugan, Carlos Gershenson, Preethi Nanjundan, Hiroki Sayama

Northeast Journal of Complex Systems (NEJCS)

This study explores the complexity in the trade-offs between military expenditure, healthcare expenditure, and GDP growth across select Asian nations and major weapon-exporting countries, examining how nations allocate finite resources between national security and human well-being over the past two decades. Using a systems science approach, the research integrates Granger causality testing to analyze temporal and directional relationships among GDP growth, military expenditure, and healthcare expenditure, uncovering their dynamic interdependencies. The methodology includes trend and slope analysis, Granger causality testing, outlier detection, and clustering to identify heterogeneity in resource allocation strategies. Developed, weapon-exporting nations exhibit complementary trends, with strong causality …

Quantized Average Agreement Algorithms With Error Correction For Digraphs, Shuaib A. Mughal

Honors Undergraduate Theses

Multi-agent systems have become more and more prevalent as technology increasingly gets integrated into our daily lives. Some of these technological systems are large in size; for example, the smart grid where multiple devices are used to monitor and control different aspects of the energy grid. Another example is a team of autonomous systems deployed for a specific task. When these systems are spatially distributed, an important component of distributed algorithms is the ability for the agents to reach consensus on the global state of the system. Reaching agreement enables the spatially distributed agent make decisions or determine the next …

Theory And Algorithms To Learn, Propagate, And Exploit Uncertainty For Stochastic Optimal Control Of Dynamical Systems, Vignesh Sivaramakrishnan

Electrical and Computer Engineering ETDs

Non-Gaussian uncertainty frequently arises in learning and control problems involving stochastic dynamical systems, particularly in autonomous vehicles, UAVs, satellites, and robotics. In this dissertation, we propose a new framework that leverages characteristic functions that provides a frequency-domain representation of random variables. The dissertation is structured into three key areas. First, we address model-based stochastic optimal control for linear systems with non-Gaussian noise, demonstrating that characteristic functions can be used to enforce chance constraints and control systems toward desired distributions. Second, we explore data-driven stochastic control, utilizing empirical characteristic functions to handle systems with unknown disturbances. In addition, we derive several …

A Dynamical Systems Approach For Modeling Malware Propagating Through A Network And Potential Solutions Towards Mitigating Spread, James Johnson

Cybersecurity Undergraduate Research Showcase

Many people draw close parallels between malware propagating through a network and an epidemic spreading through a population. Epidemics are often modeled by a Susceptible-Infected-Recovered (SIR) model, in which a similar system of equations can model the spread of a virus through a computer network, and can be simplified when making assumptions about the network itself and its fixed number of nodes and edges. In this instance, malware propagating in a network also should reflect the network it is propagating through, in which the dynamical system will factor in the nodes of the network and their properties. The system itself …

Approximation Via Degree Reduction Of Nonlinearities With Applications To Turbulent Flows, Flame Fronts, And Magnetohydrodynamics, Matthew Enlow

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

We perform an analytical and computational investigation on the effectiveness of a locally bounded truncation function, which we call a calming function, when applied to the nonlinear terms of several dissipative partial differential equations. In particular, the 3D Navier-Stokes equations of incompressible fluid flow, the 2D Kuramoto-Sivashinsky equations of laminar flame fronts, and the 2D MHD-Boussinesq equations of magnetohydrodynamics. Each of these equations have open questions about the global existence and uniqueness of their solutions. These calming functions effectively reduce the algebraic degree of select nonlinear terms, thus one can verify global wellposedness for these "calmed systems." More specifically, in …

Adaptive Neh With Constrained Nearest Neighbor Subtours For The Electric Vehicle Routing Problem With Time Windows, Andrew Struthers

All Master's Theses

The development of electric vehicles is currently considered one of the most innovative areas in manufacturing. Largely driven by the desire to reduce greenhouse emissions, electric vehicles are seen as a viable alternative to internal combustion engine cars. Starting from consumer cars, a dedicated effort is being made to translate this into commercial vehicles for freight and delivery. This research introduces a novel adaptive Nawaz, Enscore, Ham (NEH) algorithm with constrained nearest neighbor subtour (NEH-NN). This algorithm is tested on the standard benchmark problems in literature and used as a seed solution for the Genetic Algorithm (GA). The performance and …

Multiscale Modelling Of Brain Networks And The Analysis Of Dynamic Processes In Neurodegenerative Disorders, Hina Shaheen

Theses and Dissertations (Comprehensive)

The complex nature of the human brain, with its intricate organic structure and multiscale spatio-temporal characteristics ranging from synapses to the entire brain, presents a major obstacle in brain modelling. Capturing this complexity poses a significant challenge for researchers. The complex interplay of coupled multiphysics and biochemical activities within this intricate system shapes the brain's capacity, functioning within a structure-function relationship that necessitates a specific mathematical framework. Advanced mathematical modelling approaches that incorporate the coupling of brain networks and the analysis of dynamic processes are essential for advancing therapeutic strategies aimed at treating neurodegenerative diseases (NDDs), which afflict millions of …

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …

Msis-Kadelka: On The Uniqueness Of Network Identification, Alan Veliz-Cuba, Elena Dimitrova

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Rigid Body Constrained Motion Optimization And Control On Lie Groups And Their Tangent Bundles, Brennan S. Mccann

Doctoral Dissertations and Master's Theses

Rigid body motion requires formulations where rotational and translational motion are accounted for appropriately. Two Lie groups, the special orthogonal group SO(3) and the space of quaternions H, are commonly used to represent attitude. When considering rigid body pose, that is spacecraft position and attitude, the special Euclidean group SE(3) and the space of dual quaternions DH are frequently utilized. All these groups are Lie groups and Riemannian manifolds, and these identifications have profound implications for dynamics and controls. The trajectory optimization and optimal control problem on Riemannian manifolds presents significant opportunities for theoretical development. Riemannian optimization is an attractive …

On Subset Labelings Of Trees, Gary Chartrand, Ebrahim Salehi, Ping Zhang

Mathematical Sciences Faculty Research

For a nontrivial graph G, a subset labeling of G is a labeling of the vertices of G with nonempty subsets of the set [r]={1, 2, ... , r} for a positive integer r such that two vertices of G have disjoint labels if and only if the vertices are adjacent. The subset index ρ(G) of G is the minimum positive integer r for which G has such a subset labeling from the set [r]. If T is a tree of diameter d, then ρ(Pd+1) ≤ ρ(T). It is shown that there are several classes of trees T of diameter …

Multilayer Network Model Of Gender Bias And Homophily In Hierarchical Structures, Emerson Mcmullen

HMC Senior Theses

Although women have made progress in entering positions in academia and
industry, they are still underrepresented at the highest levels of leadership.
Two factors that may contribute to this leaky pipeline are gender bias,
the tendency to treat individuals differently based on the person’s gender
identity, and homophily, the tendency of people to want to be around those
who are similar to themselves. Here, we present a multilayer network model
of gender representation in professional hierarchies that incorporates these
two factors. This model builds on previous work by Clifton et al. (2019), but
the multilayer network framework allows us to …

Dynamical Aspects In (4+1)-Body Problems, Ryan Gauthier

Theses and Dissertations (Comprehensive)

The n-body problem models a system of n-point masses that attract each other via some binary interaction. The (n + 1)-body problem assumes that one of the masses is located at the origin of the coordinate system. For example, an (n+1)-body problem is an ideal model for Saturn, seen as the central mass, and one of its outer rings. A relative equilibrium (RE) is a special solution of the (n+1)-body problem where the non-central bodies rotate rigidly about the centre of mass. In rotating coordinates, these solutions become equilibria.

In this thesis we study dynamical aspects of planar (4 + …

Solving Clostridioides Difficile: Mathematical Models Of Transmission And Control In Healthcare Settings, Cara Sulyok, Max Lewis, Laila Mahrat, Brittany Stephenson, Malen De La Fuente Arruabarrena, David Kovalev, Justyna Sliwinska

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

On Analysis Of Effectiveness Controlling Covid-19 With Quarantine And Vaccination Compartments In Indonesia, Prihantini Prihantini

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Universality And Synchronization In Complex Quadratic Networks (Cqns), Anca R. Radulescu, Danae Evans

Biology and Medicine Through Mathematics Conference

No abstract provided.

Nidus Idearum. Scilogs, Ix: Neutrosophia Perennis, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

In this ninth book of scilogs collected from my nest of ideas, one may find new and old questions and solutions, – in email messages to research colleagues, or replies, and personal notes, some handwritten on the planes to, and from international conferences, about topics on Neutrosophy and its applications, such as: Neutrosophic Bipolar Set, Linguistic Neutrosophic Set, Neutrosophic Resonance Frequency, n-ary HyperAlgebra, n-ary NeutroHyperAlgebra, n-ary AntiHyperAlgebra, Plithogenic Crisp Graph, Plithogenic Fuzzy Graph, Plithogenic Intuitionistic Fuzzy Graph, Plithogenic Neutrosophic Graph, Plithogenic Real Number Graph, Plithogenic Complex Number Graph, Plithogenic Neutrosophic Number Graph, and many more.

Exchanging ideas with: Tareq Al-Shami, …

The Kepler Problem On Complex And Pseudo-Riemannian Manifolds, Michael R. Astwood

Theses and Dissertations (Comprehensive)

The motion of objects in the sky has captured the attention of scientists and mathematicians since classical times. The problem of determining their motion has been dubbed the Kepler problem, and has since been generalized into an abstract problem of dynamical systems. In particular, the question of whether a classical system produces closed and bounded orbits is of importance even to modern mathematical physics, since these systems can often be analysed by hand. The aforementioned question was originally studied by Bertrand in the context of celestial mechanics, and is therefore referred to as the Bertrand problem. We investigate the qualitative …

Dynamics Of Mutualism In A Two Prey, One Predator System With Variable Carrying Capacity, Randy Huy Lee

UNF Graduate Theses and Dissertations

We considered the livelihood of two prey species in the presence of a predator species. To understand this phenomenon, we developed and analyzed two mathematical models considering indirect and direct mutualism of two prey species and the influence of one predator species. Both types of mutualism are represented by an increase in the preys' carrying capacities based on direct and indirect interactions between the prey. Because of mutualism, as the death rate parameter of the predator species goes through some critical value, the model shows transcritical bifurcation. Additionally, in the direct mutualism model, as the death rate parameter decreases to …

Role Of Inhibition And Spiking Variability In Ortho- And Retronasal Olfactory Processing, Michelle F. Craft

Theses and Dissertations

Odor perception is the impetus for important animal behaviors, most pertinently for feeding, but also for mating and communication. There are two predominate modes of odor processing: odors pass through the front of nose (ortho) while inhaling and sniffing, or through the rear (retro) during exhalation and while eating and drinking. Despite the importance of olfaction for an animal’s well-being and specifically that ortho and retro naturally occur, it is unknown whether the modality (ortho versus retro) is transmitted to cortical brain regions, which could significantly instruct how odors are processed. Prior imaging studies show different …

Building Model Prototypes From Time-Course Data, David Murrugarra, Alan Veliz-Cuba

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Contributions To The Teaching And Learning Of Fluid Mechanics, Ashwin Vaidya

Department of Mathematics Faculty Scholarship and Creative Works

This issue showcases a compilation of papers on fluid mechanics (FM) education, covering different sub topics of the subject. The success of the first volume [1] prompted us to consider another follow-up special issue on the topic, which has also been very successful in garnering an impressive variety of submissions.

As a classical branch of science, the beauty and complexity of fluid dynamics cannot be overemphasized. This is an extremely well-studied subject which has now become a significant component of several major scientific disciplines ranging from aerospace engineering, astrophysics, atmospheric science (including climate modeling), biological and biomedical science …