Applied Mathematics Commons^™

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission In A Homogeneous Syringe-Sharing Network, Seun Ale, Que Thi Nguyet Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model assumes homogeneous mixing among syringe-sharing agents, without any form of heterogeneity in the agents interactions or syringe-sharing attitude. All syringe-sharing PWID are treated as identical in terms of their interaction frequency and syringe-sharing probability. Interactions are generated dynamically using proximity-based sampling at each timestep (one day), allowing agents to form syringe-sharing interactions based on spatial closeness. The number of daily interaction events is fixed at the population level, and each syringe-sharing agent has the same probability …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission With Inter- And Intra-Group Structural And Behavioural Heterogeneous Syringe-Sharing Networks (5), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model incorporates structural heterogeneity through a three-group interaction framework and behavioural heterogeneity through group-specific syringe-sharing rates with additional intra-group variability. The syringe-sharing population in the model is divided into core, inner, and outer circle groups representing individuals with high, moderate, and low levels of syringe-sharing interaction intensity, respectively. In addition to differences in the number of daily interaction opportunities across groups, agents in each group are assigned syringe-sharing probabilities that vary at the individual level around their …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission In A Two-Group Structural Heterogeneous Syringe-Sharing Network (M2), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model extended a baseline homogeneous model by incorporating structural heterogeneity via a two-group interaction framework. The syringe-sharing population in the model is divided into inner and outer circle groups representing individuals with differing levels of syringe-sharing interaction intensity. While all agents share the same syringe-sharing probability and epidemiological processes remain identical across agents, the number of daily interaction opportunities differs between the two groups. Interactions in the model are generated dynamically using proximity-based sampling at each timestep …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission In A Three-Group Structural Heterogeneous Syringe-Sharing Network (M3), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model incorporates structural heterogeneity through a three-group interaction framework. The syringe-sharing population in the model is divided into core, inner, and outer circle groups representing individuals with high, moderate, and low levels of syringe-sharing interaction intensity, respectively. While the syringe-sharing rate and all epidemiological processes remain identical across agents, the number of daily interaction opportunities differs by agent grouping, capturing variation in structural position within the syringe-sharing network. Interactions are generated dynamically using proximity-based sampling at each …

An Odd Protocol For An Agent-Based Model Of Hepatitis C Virus Transmission With Inter-Group Structural And Behavioural Heterogeneous Syringe-Sharing Networks (M4), Seun Ale, Que Nguyen Dr., John D. Kelleher Prof., Elizabeth Hunter Dr.

Reports

The model described in this ODD is an agent-based model of hepatitis C virus (HCV) transmission among people who inject drugs (PWID). The model incorporates structural heterogeneity through a three-group interaction framework and behavioural heterogeneity through group-specific syringe-sharing rates. The syringe-sharing population in the model is divided into core, inner, and outer circle groups representing individuals with high, moderate, and low levels of syringe-sharing interaction intensity, respectively. In addition to differences in the number of daily interaction opportunities across groups, agents in each group are assigned distinct syringe-sharing probabilities, reflecting variation in risk-taking behaviour across structural groups within the syringe-sharing …

Mathematical Modelling Of Hybrid Photonic Structures For Holographic Sensors, Jack Lyons

Doctoral

This thesis outlines a mathematical framework for modelling the formation of holographic gratings in hybrid photopolymer based nanocomposites with the aim of optimising their holographic recording properties for optical sensing applications. Thus, the second aim of the work is to model the change in optical properties of the grating in response to exposure to a target analyte. This work has been a collaborative research project between the School of Mathematics & Statistics at Technological University Dublin and the Centre for Industrial and Engineering Optics that have done extensive experimental work with holographic gratings recorded in photopolymer materials.

In recent years, …

Modelling The Formation Of Unslanted Holographic Gratings In Hybrid Photopolymer Media, Jack Lyons, Dana Mackey, Izabela Naydenova

Articles

The theoretical modelling of holographic recording in photopolymers has been an important tool in their optimisation. More complex, hybrid organic/inorganic photopolymers have been developed in pursuit of materials with higher sensitivity, low shrinkage, high dynamic range and environmental stability. Recent attempts to augment the existing models for the redistribution of inorganic nanoparticles in holographic recording were successful but there is still a knowledge gap in regards to modelling optical losses, mutual cross-diffusion, the formation of slanted holographic gratings and polymerization induced shrinkage in hybrid photopolymer media. This paper will describe a novel approach to modelling the formation of unslanted holographic …

Bayesian Networks For Safety-Critical Systems, Joseph Mietkiewicz

Theses

This thesis addresses a operational challenge in modern industrial operations: the increasing complexity of systems and the consequent cognitive burden on operators. As industrial technologies advance, the human-computer interface has become the primary conduit for information flow, playing a pivotal role in operational decision-making. However, the proliferation of data often leads to information overload, potentially compromising rather than enhancing operator performance. This research explores an approach to this pressing issue through the application of Bayesian networks as decision support systems in safety- critical scenarios. Our study employs a multi-faceted approach, combining theoretical modeling with empirical testing. Through collaboration with industry …

Mathematical Modelling Of Disease Outbreak, Favour Christian, Matthew Molloy

SURE Journal: Science Undergraduate Research Experience Journal

Establishing a model framework for more research necessitates a thorough understanding of the causes, distribution, prevalence, and evolution of infectious illnesses. The main mathematical concept used in this modelling simulation is ordinary differential equations (ODEs). The purpose of this study was to investigate the significance of the many criteria linked to a zombie virus spread. The zombie framework provides an accessible and relatively simple representation of the nature of infectious disease spread, allowing for tractable assumptions and the development of more complex situations.

The models are designed around a zombie outbreak in which the zombie virus is spread through a …

Modeling Redistribution Of Nanozeolites In Holographic Recording, Dana Mackey, Jack Lyons Dr, Izabela Naydenova

Articles

Zeolite doped photopolymers have been studied experimentally due to their potential application in the develop- ment of optical sensors. It has been shown that dopant redistribution can be achieved by holographic recording and has a direct influence on the sensitivity of the recorded grating. To achieve better theoretical understanding of these processes, this paper proposes an extended photopolymerization-diffusion mathematical model for describing the dynamics of nanozeolite redistribution during recording in an acrylamide-based photopolymer. Using numerical simulations of this model, we investigate how recording conditions, dopant transport parameters, and initial load affect the refractive index modulation of the resulting photonic structure.

Mathematical Modeling And Simulation Of The Photopolymerization Process In Different Industrial Applications, Maged Shaban

Doctoral

Photopolymerization is a complex physicochemical process that uses a specific wavelength of light to convert a liquid monomer resin to a solid polymer. This study investigates the evolution of photopolymerization kinetics through mathematical modeling and simulation in different industrial applications, such as stereolithography, ceramics additive manufacturing, and photonic crystal fabrication. In stereolithography, existing photopolymerization models do not fully capture the complexity of the curing process. Therefore, we develop a novel model for photopolymerization kinetics in a realistic stereolithography setting, which attempts to advance the understanding of the impact of several material properties and parameters on this process. This model significantly …

Hamiltonian Models For The Propagation Of Long Gravity Waves, Higher-Order Kdv-Type Equations And Integrability, Rossen Ivanov

Book chapter/book

A single incompressible, inviscid, irrotational fluid medium bounded above by a free surface is considered. The Hamiltonian of the system is expressed in terms of the so-called Dirichlet-Neumann operators. The equations for the surface waves are presented in Hamiltonian form. Specific scaling of the variables is selected which leads to a KdV approximation with higher order nonlinearities and dispersion (higher-order KdV-type equation, or HKdV). The HKdV is related to the known integrable PDEs with an explicit nonlinear and nonlocal transformation.

Renormalized Stress-Energy Tensor For Scalar Fields In Hartle-Hawking, Boulware, And Unruh States In The Reissner-Nordström Spacetime, Julio Arrechea, Cormac Breen, Adrian Ottewill, Peter Taylor

Articles

In this paper, we consider a quantum scalar field propagating on the Reissner-Nordström black hole spacetime. We compute the renormalized stress-energy tensor for the field in the Hartle-Hawking, Boulware and Unruh states. When the field is in the Hartle-Hawking state, we renormalize using the recently developed “extended coordinate” prescription. This method, which relies on Euclidean techniques, is very fast and accurate. Once, we have renormalized in the Hartle-Hawking state, we compute the stress-energy tensor in the Boulware and Unruh states by leveraging the fact that the difference between stress-energy tensors in different quantum states is already finite. We consider a …

Integrable Systems On Symmetric Spaces From A Quadratic Pencil Of Lax Operators, Rossen Ivanov

Conference papers

The article surveys the recent results on integrable systems arising from quadratic pencil of Lax operator L, with values in a Hermitian symmetric space. The counterpart operator M in the Lax pair defines positive, negative and rational flows. The results are illustrated with examples from the A.III symmetric space. The modeling aspect of the arising higher order nonlinear Schrödinger equations is briefly discussed.

Application Of The Two-Variable Model To Simulate A Multisensory Reaction-Time Task, Rebecca Brady, John Butler

Academic Posters Collection

To navigate the world in an efficient manner, the brain seamlessly integrates signals received across multiple sensory modalities. Behavioral studies have suggested that multisensory processing is a winner-take-all sensory response mechanism to some optimal combination of sensory signals. In addition, multiple sensory cues are not always beneficial with some studies showing maladaptive multisensory processing as an identifier of older adults prone to falls from age matched healthy controls.

A stalwart of modelling sensory decision-making is the work by (Wong &Wang, 2006) but to date almost all of this research has been focused on unisensory tasks. We extend the reduced two-variable …

The Lagrangian Formulation For Wave Motion With A Shear Current And Surface Tension, Conor Curtin, Rossen Ivanov

Articles

The Lagrangian formulation for the irrotational wave motion is straightforward and follows from a Lagrangian functional which is the difference between the kinetic and the potential energy of the system. In the case of fluid with constant vorticity, which arises for example when a shear current is present, the separation of the energy into kinetic and potential is not at all obvious and neither is the Lagrangian formulation of the problem. Nevertheless, we use the known Hamiltonian formulation of the problem in this case to obtain the Lagrangian density function, and utilising the Euler-Lagrange equations we proceed to derive some …

Enhancing Control Room Operator Decision Making: An Application Of Dynamic Influence Diagrams In Formaldehyde Manufacturing, Joseph Mietkiewicz, Anders L. Madsen

Articles

Intoday’s rapidly evolving industrial landscape, control room operators must grapple with an ever-growing array of tasks and respon sibilities. One major challenge facing these operators is the potential for task overload, which can lead to decision fatigue and increased reliance on cognitive biases. To address this issue, we propose the use of dynamic influence diagrams (DID) as the core of our decision support system. By monitoring the process over time and identifying anomalies, DIDs can recommend the most effective course of action based on a probabilistic assessment of future outcomes. Instead of letting the operator choose or search for the …

A Mode-Sum Prescription For The Renormalized Stress Energy Tensor On Black Hole Spacetimes, Peter Taylor, Cormac Breen, Adrian Ottewill

Articles

In this paper, we describe an extremely efficient method for computing the renormalized stress-energy tensor of a quantum scalar field in spherically symmetric black hole spacetimes. The method applies to a scalar field with arbitrary field parameters. We demonstrate the utility of the method by computing the renormalized stress-energy tensor for a scalar field in the Schwarzschild black hole spacetime, applying our results to discuss the null energy condition and the semiclassical backreaction.

Morton-Ordered Gpu Lattice Boltzmann Cfd Simulations With Application To Blood Flow, Gerald Gallagher, Fergal J. Boyle

Conference Papers

Computational fluid dynamics (CFD) is routinely used for numerically predicting cardiovascular-system medical device fluid flows. Most CFD simulations ignore the suspended cellular phases of blood due to computational constraints, which negatively affects simulation accuracy. A graphics processing unit (GPU) lattice Boltzmann-immersed boundary (LB-IB) CFD software package capable of accurately modelling blood flow is in development by the authors, focusing on the behaviour of plasma and stomatocyte, discocyte and echinocyte red blood cells during flow. Optimised memory ordering and layout schemes yield significant efficiency improvements for LB GPU simulations. In this work, comparisons of row-major-ordered Structure of Arrays (SoA) and Collected …

Modelling Spherical Aberration Detection In An Analog Holographic Wavefront Sensor, Emma Branigan, Suzanne Martin, Matthew Sheehan, Kevin Murphy

Conference Papers

The analog holographic wavefront sensor (AHWFS) is a simple and robust solution to wavefront sensing in turbulent environments. Here, the ability of a photopolymer based AHWFS to detect refractively generated spherical aberration is modelled and verified.

On The Coriolis Effect For Internal Ocean Waves, Rossen Ivanov

Conference papers

A derivation of the Ostrovsky equation for internal waves with methods of the Hamiltonian water wave dynamics is presented. The internal wave formed at a pycnocline or thermocline in the ocean is influenced by the Coriolis force of the Earth's rotation. The Ostrovsky equation arises in the long waves and small amplitude approximation and for certain geophysical scales of the physical variables.

Data Driven Bayesian Network To Predict Critical Alarm, Joseph Mietkiewicz, Anders Madsen

Articles

Modern industrial plants rely on alarm systems to ensure their safe and effective functioning. Alarms give the operator knowledge about the current state of the industrial plants. Trip alarms indicating a trip event indicate the shutdown of systems. Trip events in power plants can be costly and critical for the running of the operation.This paper demonstrates how trips events based on an alarm log from an offshore gas production can be reliably predicted using a Bayesian network. If a trip event is reliably predicted and the main cause of it is identified, it will allow the operator to prevent it. …

Multicomponent Fokas-Lenells Equations On Hermitian Symmetric Spaces, Vladimir Gerdjikov, Rossen Ivanov

Articles

Multi-component integrable generalizations of the Fokas-Lenells equation, associated with each irreducible Hermitian symmetric space are formulated. Description of the underlying structures associated to the integrability, such as the Lax representation and the bi-Hamiltonian formulation of the equations is provided. Two reductions are considered as well, one of which leads to a nonlocal integrable model. Examples with Hermitian symmetric spaces of all classical series of types A.III, BD.I, C.I and D.III are presented in details, as well as possibilities for further reductions in a general form.

Semiclassical Backreaction On Asymptotically Anti–De Sitter Black Holes, Peter Taylor, Cormac Breen

Articles

We consider a quantum scalar field on the classical background of an asymptotically anti–de Sitter black hole and the backreaction the field’s stress-energy tensor induces on the black hole geometry. The backreaction is computed by solving the reduced-order semiclassical Einstein field equations sourced by simple analytical approximations for the renormalized expectation value of the scalar field stress-energy tensor. When the field is massless and conformally coupled, we adopt Page’s approximation to the renormalized stress-energy tensor, while for massive fields we adopt a modified version of the DeWitt-Schwinger approximation. The latter approximation must be modified so that it possesses the correct …

Five-Wave Resonances In Deep Water Gravity Waves: Integrability, Numerical Simulations And Experiments, Dan Lucas, Marc Perlin, Dian-Yong Liu, Shane Walsh, Rossen Ivanov, Miguel D. Bustamante

Articles

In this work we consider the problem of finding the simplest arrangement of resonant deep water gravity waves in one-dimensional propagation, from three perspectives: Theoretical, numerical and experimental. Theoretically this requires using a normal-form Hamiltonian that focuses on 5-wave resonances. The simplest arrangement is based on a triad of wave vectors K₁ + K₂ = K₃ (satisfying specific ratios) along with their negatives, corresponding to a scenario of encountering wave packets, amenable to experiments and numerical simulations. The normal-form equations for these encountering waves in resonance are shown to be non-integrable, but they admit an integrable reduction …

Quotient-Transitivity And Cyclic Subgroup-Transitivity, Brendan Goldsmith, Ketao Gong

Articles

We introduce two new notions of transitivity for Abelian 𝑝-groups based on isomorphism of quotients rather than the classical use of equality of height sequences associated with Abelian 𝑝-group theory. Unlike the classical theory where “most” groups are transitive, these new notions lead to much smaller classes, but even these classes are sufficiently large to be interesting.

On The Socles Of Fully Inert Subgroups Of Abelian P-Groups, Andrey R. Chekhlov, Peter V. Danchev, Brendan Goldsmith

Articles

We define the so-called fully inert socle-regular and weakly fully inert socle-regular Abelian p-groups and study them with respect to certain of their numerous interesting properties. For instance, we prove that in the case of groups of length ! these two group classes coincide but that in the case of groups of length ! + 1 they differ. Some structural and characterization results are also obtained. The work generalizes concepts which have been of interest recently in the theory of entropy in algebra and builds on recent investigations by the second and third named authors in Arch. Math. Basel (2009) …

Nanomagnetic Resonance Imaging (Nano-Mri) Gives Personalized Medicine A New Perspective, Lorenzo Rosa, Jonathan Blackledge, Albert Boretti

Books/Book chapters

This chapter provides a brief overview of molecular imaging techniques and its present and future potential in personalized medicine, with special a focus on the magnetic resonance imaging (MRI) approach. It discusses the current techniques that allow for the in vivo visualization of molecular processes at the nanoscale resolution (nano-MRI). Nano-MRI is progressing rapidly thanks to the work of a very small but extremely brilliant community of experts. This paper is not intended to be a comprehensive review of nano-MRI written for these experts, but rather a concise description of the present achievements for a much broader audience of medical …

Swirling Fluid Flow In Flexible, Expandable Elastic Tubes: Variational Approach, Reductions And Integrability, Rossen Ivanov, Vakhtang Putkaradze

Articles

Many engineering and physiological applications deal with situations when a fluid is moving in flexible tubes with elastic walls. In real-life applications like blood flow, a swirl in the fluid often plays an important role, presenting an additional complexity not described by previous theoretical models. We present a theory for the dynamics of the interaction between elastic tubes and swirling fluid flow. The equations are derived using a variational principle, with the incompressibility constraint of the fluid giving rise to a pressure-like term. In order to connect this work with the previous literature, we consider the case of inextensible and …

On The Intermediate Long Wave Propagation For Internal Waves In The Presence Of Currents, Joseph Cullen, Rossen Ivanov

Articles

A model for the wave motion of an internal wave in the presence of current in the case of intermediate long wave approximation is studied. The lower layer is considerably deeper, with a higher density than the upper layer. The flat surface approximation is assumed. The fluids are incompressible and inviscid. The model equations are obtained from the Hamiltonian formulation of the dynamics in the presence of a depth-varying current. It is shown that an appropriate scaling leads to the integrable Intermediate Long Wave Equation (ILWE). Two limits of the ILWE leading to the integrable Benjamin-Ono and KdV equations are …