Physical Sciences and Mathematics Commons^™

Gain-Delay Decoupling In Human Stimulus Frequency Otoacoustic Emissions Reveals Constraints On Cochlear Nonlinear Amplification, Yoshita Sharma, Arturo Moleti, Renata Sisto, Teresa Botti, Hansapani Rodrigo, Sri Mishra

School of Mathematical & Statistical Sciences Faculty Publications

Purpose: The nonlinear cochlear amplifier, driven by outer hair cells, underlies the remarkable sensitivity and frequency selectivity of the mammalian auditory system. Stimulus frequency otoacoustic emissions (SFOAEs) provide a noninvasive window into these active cochlear processes, yet the relationship between emission gain and delay across stimulus levels remains incompletely understood. This study examined the level dependence of SFOAEs in normal-hearing human listeners to characterize cochlear nonlinear response properties. We tested how emission gain and delay vary with stimulus level and estimated the frequency of the apical–basal transition associated with the breakdown of the approximate local scaling symmetry.

Methods: SFOAEs were …

Fully Discrete Finite Element Methods For The Stochastic Kuramoto–Sivashinsky Equation With Multiplicative Noise, Hung D. Nguyen, Liet Vo

School of Mathematical & Statistical Sciences Faculty Publications

We investigate a fully discrete finite element approximation for the stochastic Kuramoto–Sivashinsky equation, combining the standard finite element methods in spatial discretization with the implicit Euler–Maruyama scheme in time. Rigorous error estimates are established for two distinct noise regimes. In the case of bounded multiplicative noise, we prove optimal strong convergence rates in full expectation. The analysis relies crucially on a stochastic Gronwall inequality and an exponential stability estimate for the PDE solution, which together control the interplay between the nonlinear drift and the multiplicative stochastic forcing. For general multiplicative noise, where boundedness no longer holds, we derive sub-optimal convergence …

Circle Actions On Oriented 4-Manifolds, Donghoon Jang, Oleg R. Musin

School of Mathematical & Statistical Sciences Faculty Publications

In this present paper, we consider an action of the circle group on a compact oriented 4-manifold. We derive the Atiyah–Hirzebruch formula for the manifold, and associate a graph in terms of data on the fixed point set. We show in the case of isolated fixed points that if an abstract graph satisfies the Atiyah–Hirzebruch formula, then there exists a corresponding 4-dimensional oriented S1-manifold.

Hyena: An Observing System Simulation Experiment For Hypothetical Energetic Neutral Atom Imagers, Joel Tibbetts, Amy Keesee, Matina Gkioulidou, Robert Demajistre, Viacheslav Merkin

Faculty Publications

Mesoscale plasma sheet flows are widely understood to be a critical component of the overall picture of energy, particle, and magnetic flux transport during periods of geomagnetic activity. Without simultaneous measurements with true global coverage, the short lifetime (~10 min) and localized spatial extents (~1–3 R_E in azimuth) of these structures make obtaining a global picture of their contributions to stormtime magnetosphere dynamics difficult to characterize. Energetic neutral atom (ENA) imaging can enable remote mapping of plasma energization in the magnetosphere; however, its line-of-sight integrated nature, coupled with the challenging-to-characterize attributes of the target physical phenomena, means that numerous …

Workshop Outcomes Report: 2nd International Workshop On Seismic Resilience Of Arctic Infrastructure And Social Systems, Majid Ghayoomi, Daniela Morganti

Faculty Publications

The report provides an overview of the second international workshop on Seismic Resilience of Arctic Infrastructure and Social Systems. The report discusses agenda, workshop activities, interdisciplinary working groups, and results. It ends with several strategic questions and investigation plans that were developed as part of the workshop activities.

Biochemical Investigations Of F420-Dependent Glucose-6-Phosphate Dehydrogenase From Cryptosporangium Arvum, Sarah T. Al-Noubani

2026 Spring Honors Capstones Projects

F₄₂₀-dependent glucose-6-phosphate dehydrogenase (FGD) catalyzes the conversion of glucose-6-phosphate to 6-phosphogluconolactone using the deazaflavin, Cofactor F₄₂₀. FGD from Mycobacterium tuberculosis has been investigated due to its health relevance to prodrug activation. More recently, FGD from Cryptosporangium arvum (Cryar- FGD) has been investigated due to its broader substrate specificity toward multiple sugar phosphates. Kinetic and NMR studies have shown that Cryar-FGD has dual catalytic activity as a dehydrogenase and isomerase. Further investigations are being conducted on Cryar-FGD to characterize key residues involved in catalysis.

To investigate the catalytically active residues of Cryar-FGD, …

An Empirical Framework For Evaluating Semantic Preservation Using Hugging Face, Nan Jia, Anita Raja, Raffi Khatchadourian

Publications and Research

As machine learning (ML) becomes an integral part of high-autonomy systems, it is critical to ensure the trustworthiness of learning-enabled software systems (LESS). Yet, the nondeterministic and run-time-defined semantics of ML complicate traditional software refactoring. We define semantic preservation in LESS as the property that optimizations of intelligent components do not alter the system's overall functional behavior. This paper introduces an empirical framework to evaluate semantic preservation in LESS by mining model evolution data from HuggingFace. We extract commit histories, $\textit{Model Cards}$, and performance metrics from a large number of models. To establish baselines, we conducted case studies in three …

Resilience For Whom? A Study In Pathways And Production Of Unequal Risk In The Rockaways, Aaryan M. Nair

Publications and Research

This paper investigates how climate adaptation policies in the Rockaway Peninsula of New York City produce unequal outcomes despite their ostensibly neutral design, framing resilience as an environmental and climate justice problem. Situated within a landscape marked by stark socioeconomic disparities, aging housing stock, and high exposure to coastal flooding, the study demonstrates that existing adaptation strategies—centered on uniform technical standards, insurance frameworks, and large-scale coastal infrastructure—systematically advantage actors with greater financial and institutional capacity while leaving low-income residents, particularly renters, disproportionately vulnerable.

The analysis identifies three core dynamics underlying this “unequal-by-design” resilience regime: (1) the stratified feasibility of compliance …

The Classical Limit In Geometric Quantization By Group Extension, Paul Bracken

School of Mathematical & Statistical Sciences Faculty Publications

Physical systems as a rule are associated with a symmetry group. The group approach to geometric quantization makes use of this to introduce a quantization by means of group extension. This procedure is discussed and applied to a physical system whose group law has its origin with the Galilean group. The main intention is to investigate the classical limit and its relationship under this approach to geometric quantization. The classical quantization conditions are obtained based on a deeper foundation.

Geospatial Analysis Of Sinkhole Density And Characteristics In West Virginia, Marissa Shannon Loftus

Graduate Theses, Dissertations, and Problem Reports (ETD)

Creation of a sinkhole map of West Virginia provides useful data to help identify areas susceptible to sinkhole related hazards, as well as allowing for detailed analysis of factors controlling karst development. Newly available, statewide LiDAR-derived digital elevation data have made mapping sinkholes over larger spatial extents feasible. For this study, sinkholes were mapped for all areas of West Virginia that are underlain by carbonate rocks; then the distribution and characteristics were evaluated overall and in four focus areas (Berkeley and Jefferson counties, Pendleton County, Greenbrier County, and Monroe County). These areas correspond to broader physiographic regions, with Berkeley, Jefferson, …

Factors Influencing Eastern Wild Turkey (Meleagris Gallopavo Silvestris) Productivity And Nesting Chronology In West Virginia, Kirstin Palumbo

Graduate Theses, Dissertations, and Problem Reports (ETD)

Identifying drivers of variation in the timing of breeding behaviors, such as courtship activities and nesting chronology, is important for the effective management of avian species. Likewise, productivity is an important component of game bird population dynamics and can be broken up into multiple components such as the probability of nesting, clutch size, and nest success. One species that experiences a relatively long reproductive season is the Eastern wild turkey (Meleagris gallopavo silvestris). Contemporary research in the southeastern United States has raised concerns regarding declines in both wild turkey populations and overall productivity. West Virginia, however, is unique …

Multi-Timescale Monitoring And Modeling For Resilient Smart Grids: Pmu Anomaly Detection And Battery Digital Twins, Muhammad Imran Hossain

Graduate Theses, Dissertations, and Problem Reports (ETD)

Modern power systems face failures at very different timescales. Cyber-physical disturbances may emerge within seconds, while battery degradation develops over hundreds of operating cycles. Both monitoring problems share the same underlying difficulty: power systems produce measurement data in abundance, but reliably labeled examples of abnormal or degraded operation are scarce. Rare grid events are difficult to label, and battery degradation data are heterogeneous across cells, cycling protocols, and chemistries. This thesis addresses these challenges through two complementary domain-informed learning frameworks that constrain representation learning using information specific to each physical problem.

First, at the system level, T-BiGAN, a Transformer-augmented bidirectional …

Dataless Neural Networks For Boolean Satisfiability And Network Optimization, Andrew Evan Gautier

Graduate Theses, Dissertations, and Problem Reports (ETD)

Combinatorial optimization problems (COPs) require searching over a finite solution space subject to constraints, with the goal of satisfying an objective function. They arise in operations research, scheduling, resource allocation, circuit design, and many other fields. Many problems in combinatorial optimization (including satisfiability and network design) are NP-hard. Traditionally, researchers have built approximate solvers that return near- optimal solutions efficiently by developing increasingly sophisticated heuristics and meta- heuristics. Deep learning has provided new opportunities for improving combinatorial solvers by leveraging neural guidance to prune the search space. Traditional neural networks have distinct drawbacks in this context: separate training and …

Comparing Unet And Hrnet For Geomorphic Feature Extraction From Digital Terrain Model-Derived Land Surface Parameters, Behnam Solouki

Graduate Theses, Dissertations, and Problem Reports (ETD)

Automated extraction of geomorphic features from high spatial resolution terrain data is important for environmental monitoring, geohazard assessment, and landscape change analysis. This study compares two convolutional neural network architectures, UNet and High-Resolution Network (HRNet), for semantic segmentation of mine benches and sinkholes from lidar-derived digital terrain models and land surface parameters. Mine benches represent anthropogenic, elongated, stepped landforms associated with historic surface mining, whereas sinkholes are natural, compact depressions common in karst terrain. Three terrain-derived input layers were used: square-root-transformed slope, broad-scale topographic position index, and fine-scale annulus topographic position index. Models were trained using five training sample sizes, …

Multimodal Representation Learning For Face Understanding: From Caption Supervision To Foundation Model Adaptation, Md Mahedi Hasan

Graduate Theses, Dissertations, and Problem Reports (ETD)

The rapid advancement of intelligent surveillance systems and the increasing demand for reliable biometric identification in border security, public safety, and digital forensics require robust face understanding under unconstrained conditions, including low resolution, pose variation, and occlusion. While Vision Transformer (ViT)-based foundation models have greatly improved visual representation learning, their patch-based tokenization and lack of spatial inductive bias limit their ability to capture fine-grained details in low-resolution inputs. This dissertation investigates multimodal representation learning for face understanding through natural language supervision, large-scale face-caption pre-training, and parameter-efficient foundation model adaptation. It hypothesizes that textual supervision provides complementary semantic cues that improve …

Does Diverse Seeding Adoption Reduce Production Costs? The Case Of Diverse Forage Seeding Strategies In West Virginia., Ivan Andres Wong

Graduate Theses, Dissertations, and Problem Reports (ETD)

Feed and harvested forage represent a major share of production costs in Appalachian cow-calf systems, where a pronounced summer forage gap forces producers to rely on purchased hay. This thesis evaluates whether adopting diverse forage seeding strategies reduces production costs relative to the existing pasture management practice, accounting for the spatial heterogeneity of West Virginia’s production environments. The analysis proceeds in two steps. First, an unsupervised K-means clustering of 14 farms enrolled in the NRCS Conservation Innovation Grant field trial groups the farms into two agroclimatic clusters, Highland-Cool and LowlandWarm, using elevation, growing-season Growing Degree Days, growing-season precipitation, and soil …

Dielectrophoretic Biomarkers For Cancer Detection And Cell Analysis: Integrating Microfluidics And Ai, Raphael Olumide Oladokun

Graduate Theses, Dissertations, and Problem Reports (ETD)

Pancreatic ductal adenocarcinoma (PDAC) carries a five-year survival rate of 13%, driven largely by late-stage diagnosis and the absence of sensitive noninvasive screening tools. Current diagnostic methods lack the sensitivity to detect disease-associated systemic changes at early and precancerous stages, representing a critical clinical gap. This dissertation addresses the central hypothesis that PDAC and its pathological subtypes induce measurable, disease-associated electrophysiological changes in circulating PBMCs that can serve as correlative liquid-biopsy biomarkers. To test this hypothesis, this work asks: can dielectrophoresis (DEP), impedance and zeta potential analysis with AI-assisted classification distinguish benign pancreatic conditions (non-malignant control), precancerous lesions (primarily IPMNs), …

Energy Partition And Heating Mechanisms In Asymmetric Antiparallel Magnetic Reconnection, Aleksandra Abova-Volkova

Graduate Theses, Dissertations, and Problem Reports (ETD)

Magnetic reconnection is a fundamental plasma physics process whereby a change in magnetic field connectivity drives the conversion of magnetic energy into energy of the surrounding plasma, often explosively. One of the many settings where it occurs is at the dayside magnetopause of Earth and other planets, where the magnetic field, number density, and/or temperature in the plasmas on the two sides upstream of the reconnection site are asymmetric. How the incoming magnetic energy gets partitioned into outgoing energies during asymmetric reconnection remains an outstanding question; of special interest is the fraction that gets converted into internal energy of ions …

Timing, Spectral, And Single-Pulse Properties Of Radio Pulsars, Evan Francis Lewis

Graduate Theses, Dissertations, and Problem Reports (ETD)

Radio pulsars are highly magnetized, rapidly rotating neutron stars which emit beams of radio waves from their magnetic poles. Their incredible rotational stability allows for their use in a variety of high-energy astrophysical studies, though the details of their internal structure and emission mechanisms are still unknown. We use observations of a cross-section of the pulsar population in order to investigate the nature of their evolution, their emission properties, and their environments.

First we derive timing solutions for three pulsars discovered through their sporadic single pulses. It was possible to obtain timing solutions through a set of single-pulse times of …

Sedimentological And Geochemical Investigation Of The Origin Of Upper Pennsylvanian Black Shales, East-Central Appalachian Basin, Tyler Hickey

Graduate Theses, Dissertations, and Problem Reports (ETD)

In the east-central Allegheny foreland basin, laminated black shales overlying Upper Pennsylvanian Glenshaw Fm. coal seams record paleoenvironmental conditions associated with the termination of peat swamp deposition before, during, and after the Carboniferous Coal Forest Collapse (CCFC), a major paleobotanical evolutionary event during the Late Paleozoic Ice Age (LPIA) that contributed to extinction of lepidodendrons near the Desmoinesian-Missourian boundary (~306 Ma). Previous investigations of the CCFC commonly implicate an episode of aridification during intensification of LPIA glaciation that stressed the lepidodendrons beyond their ecological tipping point; however, the cause of this aridification is unclear. An investigation of Glenshaw Fm. black …

Deposition And Diagenesis Of Permo-Triassic Gypsum From Wyoming And Texas: Saline Lake And Groundwater Systems Of Equatorial Pangea, Maya Yamei Bradford

Graduate Theses, Dissertations, and Problem Reports (ETD)

Knowledge of gypsum textures and the processes that yield them is important for interpreting the history of environments, climates, and life on Earth. This is because gypsum textures are products of specific environmental, microbiological, and diagenetic processes, and because gypsum is relatively common in the Earth’s sedimentary record. Despite this significance, gypsum is relatively understudied. The fundamental goal of this dissertation is to advance our understanding of gypsum textures by presenting detailed, petrography-based investigations of Permo-Triassic gypsum from the continental interior of Pangea.

Gypsum is typical in the Permo-Triassic sedimentary record of tropical Pangea, where it is associated with red …

Adventures In Black Hole Binary Waveform Modeling, Siddharth Mahesh

Graduate Theses, Dissertations, and Problem Reports (ETD)

The modeling of black hole binaries requires accurate descriptions of both their relativistic vacuum dynamics and their interaction with surrounding astrophysical environments. Although these problems are often treated separately, this dissertation develops a unified view: key observables of black hole binary systems can be understood by identifying the dynamical instabilities that control their evolution. In the vacuum problem, the relevant unstable structure is associated with the remnant spacetime and its role in shaping the merger-ringdown gravitational waveform. In the environmental problem, the relevant instability is the epicyclic instability of orbits in the binary potential, which controls the location and evolution …

High-Resolution Laser Diagnostics For Ion Measurements In Magnetized Plasmas, Katey Stevenson

Graduate Theses, Dissertations, and Problem Reports (ETD)

In this work, we investigate ion heating in two plasma systems (helicon plasmas and flux rope plasmas) using the PHAse Space MApping (PHASMA) experiment. Our studies rely on high-resolution laser diagnostics, specifically laser-induced fluorescence (LIF), to measure ion velocity distribution functions (IVDFs). The temperature and bulk flow of each species are inferred from their respective VDFs. This dissertation is organized into three main parts: the study of ion heating in helicon plasmas, pulsed LIF modeling and diagnostic development, and the study of ion heating in flux rope plasmas. Helicon plasma sources efficiently generate high-density plasmas and are widely used to …

Studies On The Depth Formula And On Reducing Dimensions, Brian Mccourt Laverty

Graduate Theses, Dissertations, and Problem Reports (ETD)

This dissertation presents the author’s recent research, conducted under the supervision of Professor Olgur Celikbas, and based on two articles—one published and one in progress. These works develop two closely related research directions in commutative algebra. Together, they contribute to the subject by addressing aspects of existing conjectures, establishing new results, and introducing methods for studying homological invariants.

The first research direction concerns the depth formula, namely the equality \[ \depth_R(M)+\depth_R(N)=\depth(R)+\depth_R(M\otimes_RN) \] where $M$ and $N$ are finitely generated $R$-modules. A classical result of Auslander \cite{Aus} shows that the depth formula holds provided that either $M$ or $N$ has finite …

A Digital Calibration Source For 21 Cm Cosmology Telescopes, Kalyani Balkrishna Bhopi

Graduate Theses, Dissertations, and Problem Reports (ETD)

Precise calibration of radio telescope beams and gains is a central requirement for 21 cm intensity mapping experiments, which aim to measure large scale cosmological structure through the redshifted emission line of neutral hydrogen. Bright astrophysical foregrounds dominate the sky at these frequencies, and separating them from the cosmological signal demands precise control over instrumental systematics, particularly the telescope beam and its frequency-dependent response. Existing aerial calibration sources are incoherent broadband emitters, detectable only as total power. They provide no direct phase information and suffer from poor sensitivity in low signal-to-noise regimes.

We present the Precision Emitter for 21cm Array …

Evaluation Of Potential Factors Limiting The Expansion Of Invasive Carp (Hypophthalmichthys Spp.) In The Ohio River Basin, Erin Shepta

Graduate Theses, Dissertations, and Problem Reports (ETD)

The introduction of aquatic invasive species is one of the greatest threats to freshwater biodiversity around the world. Two species of invasive carp, bighead carp (Hypophthalmichthys nobilis) and silver carp (H. molitrix) have spread throughout much of the Mississippi River Basin, resulting in serious ecological impacts to native communities. Their spread in the Ohio River, a major tributary of the Mississippi River, appears to have slowed, with limited evidence of upstream advancements. Here, we investigated abiotic and biotic factors that may be contributing to the reduced spread of invasive carp in the Ohio River Basin. Generally, …

A New Parsimony-Based Method For Reconstructing Sequences Of Developmental Events And Estimating Rates Of Intraspecific Variation, With Applications To Trilobites, Alexander Benjamin Bradley

Graduate Theses, Dissertations, and Problem Reports (ETD)

Ontogenetic Sequence Analysis (OSA) is a method for reconstructing multiple sequences of abrupt phenotypic transformations (developmental events) for sampled populations of any kind of organism. It makes use of cladistic parsimony software to produce a network, or graph, whose vertices represent unique phenotypes at different stages of maturity (“semaphoronts”) and whose edges describe the developmental events occurring between semaphoronts. It is a powerful tool for constraining the range of developmental variation possible for a given species and generating sample statistics capable of identifying both the most common and the outlier ontogenetic sequences. However, OSA has seen little use since its …

Development Of Novel Methods For Investigative Leads In Firearm And Explosive Related Incidents, Addio Joseph Fiordigigli Jr.

Graduate Theses, Dissertations, and Problem Reports (ETD)

Criminal outbreaks and gun violence persist as a multifaceted global crisis, marked by escalating rates of homicide, suicide, and terrorism that destabilize communities and strain public resources. The proliferation of illicit firearms and homemade explosive devices, along with the complexity of modern criminal networks, necessitates innovative scientific tools to strengthen preventive intelligence operations and ensure that the legal process is grounded in physical evidence. More efficient detection of traces left behind at a crime scene can help prevent further harm or injury from follow-up attacks. This study aims to develop and evaluate new triage methods for characterizing gunshot residues (GSR) …

Optimization Of The Cmc Algorithm, Christopher Joseph Moner

Graduate Theses, Dissertations, and Problem Reports (ETD)

Cartridge cases recovered from discharged firearms contain tool marks produced by the internal mechanisms of said firearm. Firearm and tool mark examiners com pare these marks to determine whether two cartridge cases originated from the same firearm. Traditional comparison methods have been criticized for their subjective nature and reliance on examiner interpretation rather than objective decision thresholds. The Congruent Matching Cells (CMC) algorithm was developed as a quantitative, objective method for tool mark comparison. CMC is a surface topography correlation algorithm that partitions a tool mark into small regions, or cells, and evaluates their similarity using the areal cross-correlation function …

New Fossil Mygalomorph Spiders (?Idiopidae, Pycnothelidae) From The Lower Cretaceous Crato Formation Of Brazil, Elis Maria Gomes Santana

Graduate Theses, Dissertations, and Problem Reports (ETD)

The infraorder Mygalomorphae represents one of the earliest-diverging lineages of spiders, but its fossil record remains sparse relative to the modern diversity of the group. This is a reflection of both ecological and preservational biases, such as the predominantly fossorial habits of many mygalomorphs and the strong bias of the spider fossil record toward amber deposits. Compression fossils from rock deposits are therefore especially important for documenting the evolutionary history of the group. Here, two new mygalomorph fossils from the Lower Cretaceous Crato Formation, Araripe Basin (Brazil) are described. The first specimen is tentatively referred to ?Idiopidae based on male …