Physical Sciences and Mathematics Commons^™

Brand Positioning Map And Analysis Using Web Scraping And Advertisement Analysis, Surya Bhatt

Theses and Dissertations

There’s a significant increase in online consumer forums. When customers set out to buy a product they use these forums to form an opinion. Our research focuses on comparing Brand positioning maps based on consumer reviews. We also analyse the impact of advertisements and expert reviews. Our goal is to show that combining consumer reviews with ads and electronic media will help us analyze the effectiveness of advertising on brand positioning maps. This approach shall also help us in making association graphs for a brand using words of perception/opinion associated with that brand/product. Which may in turn assist companies in …

Complexity In Overmarsh Circulation, Jessica Chassereau Sullivan

Theses and Dissertations

Overmarsh circulation is highly complex with variations in current direction over very short timescales and flowpaths that differ substantially between flood and ebb cycles. Understanding such flow complexities in salt marshes is important because they inherently impact the distribution of sediment, larvae and nutrients throughout the marsh, and hence, the ecogeomorphic feedbacks that control landscape evolution. The purpose this Ph.D. research is to quantitatively evaluate the effects of salt marsh topography on overmarsh circulation in a Georgia salt marsh. This dissertation is comprised of three parts. First, digital elevation models (DEMs) were compared to characterize how well airborne lidar (light …

Proxy Development And Application For Reconstructing The Surface Ocean Carbonate System, Brittney J. Marshall

Theses and Dissertations

Over the last two centuries, human activities have led to an unprecedented rate of carbon input into the atmosphere and oceans resulting in an alarmingly rapid decline in surface ocean pH, a process referred to as ocean acidification (OA). This process is leading to an observed decline in the carbonate ion concentrations ([CO3 2-]) in seawater – an ion that a large number of marine organisms (e.g. corals, foraminifera) utilize to secrete their skeletons and shells. The ability to identify past ocean acidification events using the marine sedimentary record can shed light on future impacts of the modern OA dilemma. …

Illuminating The Interactions And Functions Of Glutaredoxins, Bola Proteins, And Erv1 In Iron Homeostasis, Adrian Colleen Dlouhy

Theses and Dissertations

Iron is a redox-active protein cofactor required for essential cellular functions such as respiration, however excess intracellular iron can generate damaging reactive oxygen species. Understanding how cells regulate iron levels is critical for treatment of human diseases that span from anemia to iron overload disorders. Glutaredoxins (Grxs) with a CGFS active site are highly conserved proteins shown to have roles in iron homeostasis and iron-sulfur cluster assembly, thus earning them the title “the Iron Whores”. They can exist either as a [2Fe-2S] cluster-bound dimer or an apo monomer, suggesting conservation of structure and function. In addition, Grxs interact with the …

Propagated Image Segmentation Using Edge-Weighted Centroidal Voronoi Tessellation Based Methods, Youjie Zhou

Theses and Dissertations

Propagated image segmentation is the problem of utilizing the existing segmentation of an image for obtaining a new segmentation of, either a neighboring image in a sequence, or the same image but in different scales. We name these two cases as the inter-image propagation and the intra-image propagation respectively. The inter-image propagation is particularly important to material science, where efficient and accurate segmentation of a sequence of 2D serial-sectioned images of 3D material samples is an essential step to understand the underlying micro-structure and related physical properties. For natural images with objects in different scales, the intra-image propagation, where segmentations …

Toward The Combinatorial Limit Theory Of Free Words, Danny Rorabaugh

Theses and Dissertations

Free words are elements of a free monoid, generated over an alphabet via the binary operation of concatenation. Casually speaking, a free word is a finite string of letters. Henceforth, we simply refer to them as words. Motivated by recent advances in the combinatorial limit theory of graphs–notably those involving flag algebras, graph homomorphisms, and graphons–we investigate the extremal and asymptotic theory of pattern containment and avoidance in words.

Word V is a factor of word W provided V occurs as consecutive letters within W. W is an instance of V provided there exists a nonerasing monoid homomorphsism phi with …

Assessing The Magnitude And Impact Of Seawater/Pore Water Exchange In Salt Marsh Systems, Carrie Lee Milliken

Theses and Dissertations

Submarine groundwater discharge is a hydrological process that is important to study and understand as it impacts biogeochemical processes and hydrological cycles. Particularly in coastal salt marsh systems, it is an important process to analyze as these systems serve as crucial interfaces between terrestrial and marine waters and particulates. There is evidence that these systems, typically thought to have little exchange across the interface due to impermeable sediments, could actually allow for significant flow of water and particulates at shallow depths. In order to measure and quantify this flow, a method using 224Ra as a tracer has been tested. The …

Trees, Partitions, And Other Combinatorial Structures, Heather Christina Smith

Theses and Dissertations

This dissertation contains work on three main topics.

Chapters 1 through 4 provide complexity results for the single cut-or-join model for genome rearrangement. Genomes will be represented by binary strings. Let S be a finite collection of binary strings, each of the same length. Define M to be the collection of medians – binary strings μ which minimize Sigma v belongs to S H(μ,v) where H is the Hamming distance. For any non-negative function f(x), define Z(f(x), S) to be (Sigma μ belongs to M) (Pi v belongs to S)f(H(μ,v)). We study the complexity of calculating Z(f(x), S), with respect …

The Development Of Efficient Geminal-Based Methods For Quantum Chemical Calculations, Brett Allen Cagg

Theses and Dissertations

Incorporation of electron correlation to improve the accuracy of computations remains a driving force in quantum chemical method development. Traditionally, electron correlation effects are divided into static and dynamic correlation parts, and the inclusion of both results in methods that are impractical for large chemical systems. The goal of this doctoral research is to develop a method that efficiently accounts for both components of electron correlation in a separate but balanced manner. The approach focuses on combining a geminal method, called the antisymmetrized product of singlet-type, strongly orthogonal geminals (SSG), with dynamic correlation by either density functionals or a recently …

Chemical Processes Governing The Equilibrium Between Organic And Inorganic Carbon: Probing The Mechanisms Of Iron Catalyzed Reactive Oxygen Species Production, Joy Kelechi Ihekweazu

Theses and Dissertations

This study examines the oxidation of organic carbon that occurs concurrently with the autoxidation of Fe(II) to determine the role that geochemical constituents have on both the autoxidation of Fe(II) and subsequent ROS production. The reaction between reduced carbon and oxygen is thermodynamically favorable, but kinetically proceeds slowly. Fe(II) facilitates the equilibration of reduced carbon and oxygen. This equilibration occurs naturally in saline estuaries, where oxygen rich seawater mixes with anoxic groundwater. We characterized a saline estuary at the Baruch Institute and used those characterizations to recreate natural water conditions in the lab. Using simulated natural water we then examined …

Commutator Studies In Pursuit Of Finite Basis Results, Nathan E. Faulkner

Theses and Dissertations

Several new results of a general algebraic scope are developed in an effort to build tools for use in finite basis proofs. Many recent finite basis theorems have involved assumption of a finite residual bound, with the broadest result concerning varieties with a difference term (Kearnes, Szendrei, and Willard (2013+)). However, in varieties with a difference term, the finite residual bound hypothesis is known to strongly limit the degree of nilpotence observable in a variety, while, on the other hand, there is another, older series of results in which nilpotence plays a key role (beginning with those of Lyndon (1952) …

The Role Of Intermembrane Space Redox Factors In Glutathione Metabolism And Intracellular Redox Equilibrium, Hatice Kubra Ozer

Theses and Dissertations

The mitochondrial intermembrane space (IMS) is a unique subcellular compartment that houses key thiol-dependent redox pathways such as protein transport, mitochondrial respiration, and detoxification of ROS (reactive oxygen species). These pathways are all dependent on cysteine-rich proteins, thus maintaining thiol-disulfide balance in this organelle is crucial for cellular functions. An IMS protein import pathway called the Mia40-Erv1 disulfide relay system uses disulfide bond formation for the import and retention of substrate proteins in the IMS. Erv1 is also suggested to be involved in maturation of cytosolic Fe-S cluster proteins and regulation of iron homeostasis in S. cerevisiae. However, these studies …

Extremal Theorems For Degree Sequence Packing And The Two-Color Discrete Tomography Problem, Jennifer Diemunsch, Michael Ferrara, Sogol Jahanbekam, James Shook

Faculty Publications

No abstract provided.

Lucky Choice Number Of Planar Graphs With Given Girth, Axel Brandt, Jennifer Diemunsch, Sogol Jahanbekam

Faculty Publications

No abstract provided.

Synthesis And Testing Of Photosensitizer-Folate Conjugates And Potential Photosensitizers For Photodynamic Therapy, Jeffrey A. Trautmann

Dissertations

Dissertation Proposal for Jeffrey Trautmann

Photodynamic Therapy (PDT) is a technique that destroys oncogenic (cancerous) cells. It has been used in several countries since the 1980’s. Molecules that contain chromophores can function as photosensitizers, and will absorb light at various wavelengths (that being dependent upon the extent of their conjugation). Certain functional groups, upon absorption of light, can be used to convert O2 to singlet oxygens which are destructive to the cellular environment. Once an in-vitro cell contains a high enough concentration of photosensitizer material and light is able to reach the photosensitizer material, PDT can be used effectively to …

Hash-Map-Eradicator: Filtering Non-Target Sequences From Next Generation Sequencing Reads, Jonathon Brenner, Catherine Putonti

Bioinformatics Faculty Publications

Contemporary DNA sequencing technologies are continuously increasing throughput at ever decreasing costs. Moreover, due to recent advances in sequencing technology new platforms are emerging. As such computational challenges persist. The average read length possible has taken a giant leap forward with the PacBio and Nanopore solutions. Regardless of the platform used, impurities within the DNA preparation of the sample - be it from unintentional contaminants or pervasive symbiots - remains an issue. We have developed a new tool, HAsh-MaP-ERadicator (HAMPER), for the detection and removal of non-target, contaminating DNA sequences. Integrating hash-based and mapping-based strategies, HAMPER is both memory and …

The Next Generation Of Computational Science And Engineering, George K. Thiruvathukal

Computer Science: Faculty Publications and Other Works

Editor-in-Chief message.

Scientific Software Communities [Guest Editor Introduction], Andy Terrel, Michael Tobis, George K. Thiruvathukal

Computer Science: Faculty Publications and Other Works

Guest editor introduction

Network And Device Forensic Analysis Of Android Social-Messaging Applications, Daniel Walnycky, Ibrahim Baggili, Andrew Marrington, Jason Moore, Frank Breitinger

All Works

In this research we forensically acquire and analyze the device-stored data and network traffic of 20 popular instant messaging applications for Android. We were able to reconstruct some or the entire message content from 16 of the 20 applications tested, which reflects poorly on the security and privacy measures employed by these applications but may be construed positively for evidence collection purposes by digital forensic practitioners. This work shows which features of these instant messaging applications leave evidentiary traces allowing for suspect data to be reconstructed or partially reconstructed, and whether network forensics or device forensics permits the reconstruction of …

Computational Development Of Selective Nnos Inhibitors: Binding Modes And Pharmacokinetic Considerations, Adam Curtin, Gemma K. Kinsella, John Stephens

Articles

Abstract: Neuronal nitric oxide synthase (nNOS) produces the key signalling mediator nitric oxide, (NO). This gaseous, free radical molecule modulates a vast array of biological processes, from vascular pressure to immune responses and neurological signalling cascades. Overproduction of NO has been implicated in conditions including Alzheimer’s disease, Parkinson’s disease and schizophrenia. Inhibition of nNOS therefore offers a potential therapeutic approach for treatment of these conditions. This endeavour is made more complex by the fact that there are two other isoforms of nitric oxide synthase (NOS), endothelial NOS (eNOS) and inducible NOS (iNOS). The selectivity of nNOS inhibitors is therefore a …

Distributed Computing And Artificial Intelligence, 12th International Conference, Sigeru Omatu, Qutaibah M. Malluhi, Sara Rodríguez González, Grzegorz Bocewicz, Edgardo Bucciarelli, Gianfranco Giulioni, Farkhund Iqbal

All Works

No abstract provided.

E-Mail Authorship Attribution Using Customized Associative Classification, Michael R. Schmid, Farkhund Iqbal, Benjamin C.M. Fung

All Works

E-mail communication is often abused for conducting social engineering attacks including spamming, phishing, identity theft and for distributing malware. This is largely attributed to the problem of anonymity inherent in the standard electronic mail protocol. In the literature, authorship attribution is studied as a text categorization problem where the writing styles of individuals are modeled based on their previously written sample documents. The developed model is employed to identify the most plausible writer of the text. Unfortunately, most existing studies focus solely on improving predictive accuracy and not on the inherent value of the evidence collected. In this study, we …

A Service Oriented Broker-Based Approach For Dynamic Resource Discovery In Virtual Networks, Sleiman Rabah, May El Barachi, Nadjia Kara, Rachida Dssouli, Joey Paquet

All Works

© 2015, Rabah et al.; licensee Springer. In the past few years, the concept of network virtualization has received significant attention from industry and research fora. This concept applies virtualization to networking infrastructures by enabling the dynamic creation of several co-existing logical network instances (or virtual networks) over a shared physical network infrastructure (or substrate network). Due to the potential it offers in terms of diversifying existing networks and ensuring the co-existence of heterogeneous network architectures on top of shared substrates, network virtualization is often considered as an enabler of a polymorphic Internet and a cornerstone of the future Internet …

Enhancing Social Science Research In The Uae: An Open Source Software Solution University Of Sharjah (Uos) Case Study, Manar Abu Talib, Muhammed Abuodeh, Adhraa Almansoori, Arwa Alnauimi

All Works

© 2015 The Manar Abu Talib, Muhammed AbuOdeh, Adhraa Almansoori and Arwa AlNauimi. Researchers, practitioners and social scientists all agree on the enormous importance of social science research in advancing human knowledge and informing public policy makers. The National Research Foundation, along with other organizations in the UAE, is leading the initiative to integrate the efforts of social research institutions in order to support the decision making process in the UAE. As indicated by a number of social researchers during the last forum held on May 29-30, 2012, at the Emirates Center for Strategic Studies and Research, Abu Dhabi, UAE, …

Factors Influencing Digital Forensic Investigations: Empirical Evaluation Of 12 Years Of Dubai Police Cases, Ibtesam Alawadhi, Janet Read, Andrew Marrington, Virginia Franqueira

All Works

In Digital Forensics, the number of person-hours spent on investigation is a key factor which needs to be kept to a minimum whilst also paying close attention to the authenticity of the evidence. The literature describes challenges behind increasing person-hours and identifies several factors which contribute to this phenomenon. This paper reviews these factors and demonstrates that they do not wholly account for increases in investigation time. Using real case records from the Dubai Police, an extensive study explains the contribution of other factors to the increase in person-hours. We conclude this work by emphasizing on several factors affecting the …

The Contribution Of Non-Thermal And Advanced Oxidation Technologies Towards Dissipation Of Pesticide Residues, N. Misra

Articles

Background

The use of pesticides has stabilised the food production to a great extent and their usage cannot be avoided anymore. Nevertheless, common food processing operations always allowed dissipating pesticide residues in foods to some extent. Within the food science community and the food processing sector, non-thermal food technologies are being researched and commercialised at a great pace over the past three decades.

Scope and Approach

In this review we provide a critical analysis of the literature pertinent to the fate of pesticide residues during non-thermal processing of solid and liquid foods. We also identify the opportunities for further development …

Controlling Microbial Multicellular Behaviors With Saccharide Derivatives, Nischal Singh

Dissertations - ALL

Microbial multicellular behaviors like biofilm formation and swarming motility are known to increase their tolerance against antimicrobials. From microbial standpoint, nonmicrobicidal agents that do not impede growth are tolerable and therefore, there is a lower propensity to develop resistance against such agents as compared to microbicidal ones (antibiotics). This study describes a new antibiofilm approach of using nonmicrobicidal saccharide derivatives for controlling the multicellular behaviors of gram-negative bacteria, Pseudomonas aeruginosa and fungus, Candida albicans.

Pseudomonas aeruginosa is known to secrete rhamnolipids, a class of biosurfactants that plays an important role in maintaining the architecture of its biofilm and promoting its …

Development Of Improved Methodologies Toward The Formation Of C-C And C-N Bonds, Ijaz Ahmed

Dissertations - ALL

Organometallic chemistry provides valuable tools for the formation of carbon-carbon and carbon-heteroatom bonds that would otherwise require multiple steps and resources to achieve through conventional methods. Studies toward the regioselective and stereoselective formation these types of bonds using different organometallic methods will be presented. Three focal areas have been studied: C-N bond formation, C-H borylation, and silylvinylation of alkynes.

In Chapter 1, palladium-catalyzed amidation has been used to effectively form C-N bonds toward the synthesis of valuable imidazo[4,5-b]pyridines and imidazo[4,5-c]pyridines. The reaction conditions are tolerable for a variety of N-substituted-3-amino-2-chloropyridines. All current routes to expand the substrate scope in regards …

Change Point Detection And Estimation In Sequences Of Dependent Random Variables, Benjamin Cortese

Dissertations - ALL

Two change point detection and estimation procedures for sequences of dependent binary random variables are proposed and their asymptotic properties are explored. The two procedures are a dependent cumulative sum statistic (DCUSUM) and a dependent likelihood ratio test (LRT) statistic, which are generalizations of the independent CUSUM and LRT statistics.

A one step Markov dependence is assumed between consecutive variables in the sequence, and the performance of the DCUSUM and dependent LRT are shown to have substantially better size and power performance than their independent counterparts. In most cases, a comparison of the dependent procedures via simulation shows that the …

Modulation And Interactions Of Charged Biomimetic Membranes With Bivalent Ions, Adolphe Kazadi Badiambile

Dissertations - ALL

The biological membrane of an eukaryotic cell is a two-dimensional structure of mostly phospholipids with embedded proteins. This two-dimensional structure plays many key roles in the life of a cell. Transmembrane proteins, for example, play the role of a gate for different ions (such as Ca2+). Also found are peripheral proteins that are used as enzymes for different purposes in the inner leaflet of the plasma membrane. Phospholipids, in particular play three key roles. Firstly, some members of this group are used to store energy. Secondly, the hydrophobic and hydrophilic properties inherent to phospholipids enable them to be used as …