Physical Sciences and Mathematics Commons^™

A Mathematical Model Of Collagen Lattice Contraction, J. C. Dallon, Emily J. Evans, H Paul Erhlich

Faculty Publications

Two mathematical models for fibroblast-collagen interaction are proposed which reproduce qualitative features of fibroblast populated collagen lattice contraction in time. Both models are force based and model the cells as individual entities with discrete attachment sites however the collagen lattice is modeled differently for each model. In the collagen lattice model the lattice is more interconnected and formed by triangulating nodes to form the fibrous structure. In the collagen fiber model the nodes are not triangulated, are less interconnected, and the collagen fibers are modeled as a string of nodes. Both models suggest that the overall increase in stress of …

Form Factor Of Pnipam Microgels In Overpacked States, U. Gasser, J. S. Hyatt, J.- J. Lietor-Santos, E. S. Herman, L. Andrew Lyon, A. Fernandez-Nieves

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

We study the form factor of thermoresponsive microgels based on poly(N-isopropylacrylamide) at high generalized volume fractions, ζ, where the particles must shrink or interpenetrate to fit into the available space. Small-angle neutron scattering with contrast matching techniques is used to determine the particle form factor. We find that the particle size is constant up to a volume fraction roughly between random close packing and space filling. Beyond this point, the particle size decreases with increasing particle concentration; this decrease is found to occur with little interpenetration. Noteworthily, the suspensions remain liquid-like for ζ larger than 1, emphasizing the importance of …

Weekly Gridded Aquarius L-Band Radiometer/Scatterometer Observations And Salinity Retrievals Over The Polar Regions - Part 2: Initial Product Analysis, L. Brucker, Emmanuel P. Dinnat, L. S. Koenig

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Following the development and availability of Aquarius weekly polar-gridded products, this study presents the spatial and temporal radiometer and scatterometer observations at L band (frequency similar to 1.4 GHz) over the cryosphere including the Greenland and Antarctic ice sheets, sea ice in both hemispheres, and over sub-Arctic land for monitoring the soil freeze/thaw state. We provide multiple examples of scientific applications for the L-band data over the cryosphere. For example, we show that over the Greenland Ice Sheet, the unusual 2012 melt event lead to an L-band brightness temperature (TB) sustained decrease of similar to 5K at horizontal polarization. Over …

Zn(Ii) And Cu(Ii) Adsorption And Retention Onto Iron Oxyhydroxide Nanoparticles: Effects Of Particle Aggregation And Salinity, Rebecca B. Chesne, Christopher S. Kim

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Background: Iron oxyhydroxides are commonly found in natural aqueous systems as nanoscale particles, where they can act as effective sorbents for dissolved metals due to their natural surface reactivity, small size and high surface area. These properties make nanoscale iron oxyhydroxides a relevant option for the remediation of water supplies contaminated with dissolved metals. However, natural geochemical processes, such as changes in ionic strength, pH, and temperature, can cause these particles to aggregate, thus affecting their sorption capabilities and remediation potential. Other environmental parameters such as increasing salinity may also impact metal retention, e. g. when particles are transported …

Closing The Knowing-Doing Gap In Invasive Plant Management: Accessibility And Interdisciplinarity Of Scientific Research, Virginia Matzek, Justin Covino, Jennifer L. Funk, Martin Saunders

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Like many conservation disciplines, invasion biology may suffer from a knowing-doing gap, where scientific research fails to inform management actions. We surveyed California resource managers to evaluate engagement with scientific research and to identify research priorities. We examined managers' access to information, judgment of the usefulness of existing research, ability to generate scientific information, and priorities for future research. We found that practitioners rely on their own experience, and largely do not read the peer-reviewed literature, which they regard as only moderately useful. Less than half of managers who do research carry out experiments conforming to the norms of hypothesis …

Regional Dust Storm Modeling For Health Services: The Case Of Valley Fever, William A. Sprigg, Slobodan Nickovic, John N. Galgiani, Goran Pejanovic, Slavo Petkovic, Mirjam Vujadinovic, Ana Vukovic, Milan Dacic, Scott Dibiase, Anup K. Prasad, Hesham El-Askary

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

On 5 July 2011, a massive dust storm struck Phoenix, Arizona (USA), raising concerns for increased cases of valley fever (coccidioidomycosis, or, cocci). A quasi-operational experimental airborne dust forecast system predicted the event and provides model output for continuing analysis in collaboration with public health and air quality communities. An objective of this collaboration was to see if a signal in cases of valley fever in the region could be detected and traced to the storm - an American haboob. To better understand the atmospheric life cycle of cocci spores, the DREAM dust model (also herein, NMME-DREAM) was modified to …

Chemistry Students’ Attitudes About Peer-Led Team Learning Workshops: Comparison To The Six Critical Components, A.E. Dreyfuss, Janet Liou-Mark, Leo Gafney

Publications and Research

While tracking students’ performance and perseverance is important to determine the effect of the incorporation of workshops in courses, little has been published on students’ attitudes toward workshops: How do students feel about PLTL workshops? One method of examining this question is through a questionnaire developed by Gafney. This paper will present the results of a three-semester study using this questionnaire on how students view workshop in their introductory chemistry courses.

Peer Leaders’ Views On A General Chemistry Workshop Program, A.E. Dreyfuss, Janet Liou-Mark

Publications and Research

How do Peer Leaders feel about their role organizationally? What motivates them to serve? Peer Leaders are the heartbeat of the PLTL instructional model. To improve any PLTL program, feedback from Peer Leaders is necessary and beneficial. Their experiences, ideas, and honest critiques will assist in shaping the program to meet its ultimate goal: To ensure all students are engaged in their learning process through an active community setting.

Numerical Simulation Of “An American Haboob”, A. Vukovic, M. Vujadinovic, G. Pejanovic, J. Andric, M. J. Kumjian, V. Djurdjevic, M. Dacic, Anup K. Prasad, Hesham El-Askary, B. C. Paris, S. Petkovic, W. Sprigg, S. Nickovic

Mathematics, Physics, and Computer Science Faculty Articles and Research

A dust storm of fearful proportions hit Phoenix in the early evening hours of 5 July 2011. This storm, an American haboob, was predicted hours in advance because numerical, land–atmosphere modeling, computing power and remote sensing of dust events have improved greatly over the past decade. High-resolution numerical models are required for accurate simulation of the small scales of the haboob process, with high velocity surface winds produced by strong convection and severe downbursts. Dust productive areas in this region consist mainly of agricultural fields, with soil surfaces disturbed by plowing and tracks of land in the high Sonoran Desert …

Is Big Data Enough? A Reflection On The Changing Role Of Mathematics In Applications, Domenico Napoletani, Marco Panza, Daniele C. Struppa

Mathematics, Physics, and Computer Science Faculty Articles and Research

The advent of computers, and especially high-performance computers, has had a dramatic impact on the way in which mathematics is done and even more on how mathematics is applied, as demonstrated by the growth of computational mathematics as well as what goes under the name of “experimental mathematics”, to which a journal is now devoted. More importantly, computers are now used to perform highly complex computations in order to apply mathematical models to a variety of empirical problems that could never be attacked otherwise.

On Clifford Analysis For Holomorphic Mappings, M. E. Luna-Elizarrarás, M. Shapiro, Daniele C. Struppa

Mathematics, Physics, and Computer Science Faculty Articles and Research

In the classical theory of several complex variables, holomorphic mappings are just n-tuples of holomorphic functions in m variables, with arbitrary n and m, and no relations between these functions are assumed. Some 30 years ago John Ryan introduced complex, or complexified, Clifford analysis which is, in a sense, the study of certain classes of holomorphic mappings where the components are not independent, and instead obey the relations generated by the Cauchy– Riemann and Dirac-type operators. In this paper, we take a closer look at this theory emphasizing some additional properties that holomorphic mappings satisfy in this context. Our attention …

Horizontal Divergence Of Typhoon-Generated Gravity Waves In The Upper Troposphere And Lower Stratosphere (Utls) And Its Influence On Typhoon Evolution, Seung Hee Kim, H.-Y. Chun, W. Jang

Mathematics, Physics, and Computer Science Faculty Articles and Research

The characteristics of horizontal divergence induced by typhoon-generated gravity waves (HDTGWs) and the influence of HDTGW on typhoon evolution are investigated based on the simulation results of Typhoon Saomai (2006) using the Weather Research and Forecasting (WRF) model. The power spectral density of HDTGW shows dominant powers at horizontal wavelengths of 20-30 km and at periods of less than 1 h. This is associated with gravity waves generated by vigorous convective clouds in an inner core region of the typhoon. However, the domain-averaged HDTGW in the upper troposphere and lower stratosphere had a spectral peak at 24 h, which is …

Elvis: Exploring The Local Volume In Simulations, Shea Garrison-Kimmel, Michael Boylan-Kolchin, James S. Bullock, Kyle Lee

Mathematics, Physics, and Computer Science Faculty Articles and Research

We introduce a set of high-resolution dissipationless simulations that model the Local Group (LG) in a cosmological context: Exploring the Local Volume in Simulations (ELVIS). The suite contains 48 Galaxy-size haloes, each within high-resolution volumes that span 2-5 Mpc in size, and each resolving thousands of systems with masses below the atomic cooling limit. Half of the ELVIS galaxy haloes are in paired configurations similar to the Milky Way (MW) and M31; the other half are isolated, mass-matched analogues. We find no difference in the abundance or kinematics of substructure within the virial radii of isolated versus paired hosts. On …

Quantum Non-Barking Dogs, Sara Imari Walker, Paul C. W. Davies, Prasant Samantray, Yakir Aharonov

Mathematics, Physics, and Computer Science Faculty Articles and Research

Quantum weak measurements with states both pre- and post-selected offer a window into a hitherto neglected sector of quantum mechanics. A class of such systems involves time dependent evolution with transitions possible. In this paper we explore two very simple systems in this class. The first is a toy model representing the decay of an excited atom. The second is the tunneling of a particle through a barrier. The post-selection criteria are chosen as follows: at the final time, the atom remains in its initial excited state for the first example and the particle remains behind the barrier for the …

New Insights On Emergence From The Perspective Of Weak Values And Dynamical Non-Locality, Jeff Tollaksen

Mathematics, Physics, and Computer Science Faculty Articles and Research

In this article, we will examine new fundamental aspects of "emergence" and "information" using novel approaches to quantum mechanics which originated from the group around Aharonov. The two-state vector formalism provides a complete description of pre- and post-selected quantum systems and has uncovered a host of new quantum phenomena which were previously hidden. The most important feature is that any weak coupling to a pre- and post-selected system is effectively a coupling to a "weak value" which is given by a simple expression depending on the two-state vector. In particular, weak values, are the outcomes of so called "weak measurements" …

Topological Duality And Lattice Expansions, Ii: Lattice Expansions With Quasioperators, M. Andrew Moshier, Peter Jipsen

Mathematics, Physics, and Computer Science Faculty Articles and Research

The main objective of this paper (the second of two parts) is to show that quasioperators can be dealt with smoothly in the topological duality established in Part I. A quasioperator is an operation on a lattice that either is join preserving and meet reversing in each argument or is meet preserving and join reversing in each argument. The paper discusses several common examples, including orthocomplementation on the closed subspaces of a fixed Hilbert space (sending meets to joins), modal operators auS and a- on a bounded modal lattice (preserving joins, resp. meets), residuation on a bounded residuated lattice (sending …

Closed String Thermodynamics And A Blue Tensor Spectrum, Robert H. Brandenberger, Ali Nayeri, Subodh P. Patil

Mathematics, Physics, and Computer Science Faculty Articles and Research

The BICEP-2 team has recently reported the positive detection of cosmic microwave background Bmode polarization. Although uncertainties due to galactic dust foregrounds remain, it is a constructive exercise to work out the implications of presuming some part of the detected B-mode signal to be due to primordial gravitational waves. Were a positive detection of a tensor-to-scalar ratio larger than r greater than or similar to O(10(-2)) confirmed, detecting a tilt in the tensor spectrum comparable to that observed for the scalar power spectrum becomes in principle possible. We wish to explore in this brief paper the possibility of there being …

Observation Of A Quantum Cheshire Cat In A Matter-Wave Interferometer Experiment, Tobias Denkmayr, Hermann Geppert, Stephan Sponar, Hartmut Lemmel, Alexandre Matzkin, Jeff Tollaksen, Yuji Hasegawa

Mathematics, Physics, and Computer Science Faculty Articles and Research

From its very beginning, quantum theory has been revealing extraordinary and counter-intuitive phenomena, such as wave-particle duality, Schrodinger cats and quantum non-locality. Another paradoxical phenomenon found within the framework of quantum mechanics is the 'quantum Cheshire Cat': if a quantum system is subject to a certain pre- and postselection, it can behave as if a particle and its property are spatially separated. It has been suggested to employ weak measurements in order to explore the Cheshire Cat's nature. Here we report an experiment in which we send neutrons through a perfect silicon crystal interferometer and perform weak measurements to probe …

Assessing Optimal Set Of Implemental Physical Parameterization Schemes In A Multi-Physics Land Surface Model Using Genetic Algorithm, S. Hong, X. Yu, S. K. Park, Y.-S. Choi, Boksoon Myoung

Mathematics, Physics, and Computer Science Faculty Articles and Research

Optimization of land surface models has been challenging due to the model complexity and uncertainty. In this study, we performed scheme-based model optimizations by designing a framework for coupling "the micro-genetic algorithm" (micro-GA) and "the Noah land surface model with multiple physics options" (Noah-MP). Micro-GA controls the scheme selections among eight different land surface parameterization categories, each containing 2–4 schemes, in Noah-MP in order to extract the optimal scheme combination that achieves the best skill score. This coupling framework was successfully applied to the optimizations of evapotranspiration and runoff simulations in terms of surface water balance over the Han River …

Interpolation By Polynomials With Symmetries, Daniel Alpay, Izchak Lewkowicz

Mathematics, Physics, and Computer Science Faculty Articles and Research

We here specialize the standard matrix-valued polynomial interpolation to the case where on the imaginary axis the interpolating polynomials admit various symmetries: Positive semidefinite, Skew-Hermitian, J- Hermitian, Hamiltonian and others.

The procedure is comprized of three stages, illustrated through the case where on $i\R$ the interpolating polynomials are to be positive semidefinite. We first, on the expense of doubling the degree, obtain a minimal degree interpolating polynomial P(s) which on $i\R$ is Hermitian. Then we find all polynomials Ψ(s), vanishing at the interpolation points which are positive semidefinite on $i\R$. Finally, using the fact that the set of positive semidefinite …

Krein-Langer Factorization And Related Topics In The Slice Hyperholomorphic Setting, Daniel Alpay, Fabrizio Colombo, Irene Sabadini

Mathematics, Physics, and Computer Science Faculty Articles and Research

We study various aspects of Schur analysis in the slice hyperholomorphic setting. We present two sets of results: first, we give new results on the functional calculus for slice hyperholomorphic functions. In particular, we introduce and study some properties of the Riesz projectors. Then we prove a Beurling-Lax type theorem, the so-called structure theorem. A crucial fact which allows to prove our results, is the fact that the right spectrum of a quaternionic linear operator and the point S-spectrum coincide. Finally, we study the Krein-Langer factorization for slice hyperholomorphic generalized Schur functions. Both the Beurling-Lax type theorem and the Krein-Langer …

Is The Quantum State Real? An Extended Review Of Psi-Ontology Theorems, Matthew S. Leifer

Mathematics, Physics, and Computer Science Faculty Articles and Research

Towards the end of 2011, Pusey, Barrett and Rudolph derived a theorem that aimed to show that the quantum state must be ontic (a state of reality) in a broad class of realist approaches to quantum theory. This result attracted a lot of attention and controversy. The aim of this review article is to review the background to the Pusey–Barrett–Rudolph Theorem, to provide a clear presentation of the theorem itself, and to review related work that has appeared since the publication of the Pusey–Barrett–Rudolph paper. In particular, this review: Explains what it means for the quantum state to be ontic …

Sustainability Efforts Of One Oil Company In Niger Delta Of Nigeria, Charles Afam Anosike

Walden Dissertations and Doctoral Studies

Environmental degradation and socioeconomic dilemma continue to stigmatize oil production in the Niger Delta of Nigeria. Sustainability programs of oil companies often determine the improvement of living conditions in the region. This explanatory qualitative case study, guided by systems thinking theory and sustainable value framework, explored practitioners' perceptions of sustainability programs to identify its impact on business and the host communities. The research question was designed to address how sustainability efforts of a single oil company in the Niger Delta contributed to the business performance and the livelihood of the local people. Research data were gathered from a sample of …

Testing The Forensic Soundness Of Forensic Examination Environments On Bootable Media, Ahmed Fathy Abdul Latif Mohamed, Andrew Marrington, Farkhund Iqbal, Ibrahim Baggili

All Works

In this work we experimentally examine the forensic soundness of the use of forensic bootable CD/DVDs as forensic examination environments. Several Linux distributions with bootable CD/DVDs which are marketed as forensic examination environments are used to perform a forensic analysis of a captured computer system. Before and after the bootable CD/DVD examination, the computer system's hard disk is removed and a forensic image acquired by a second system using a hardware write blocker. The images acquired before and after the bootable CD/DVD examination are hashed and the hash values compared. Where the hash values are inconsistent, a differential analysis is …

An Exploration Of “Non-Economic” Damages In Civil Jury Awards, Herbert M. Kritzer, Guangya Liu, Neil Vidmar

Faculty Scholarship

Using three primary data sources plus three supplemental sources discussed in an appendix, this paper examines how well non-economic damages could be predicted by economic damages and at how the ratio of non-economic damages to economic damages changed as the magnitude of the economic damages awarded by juries increased. We found a mixture of consistent and inconsistent patterns across our various datasets. One fairly consistent pattern was the tendency for the ratio of non-economic to economic damages to decline as the amount of economic damages increased. Moreover, the variability of the ratio also tended to decline as the amount of …

High-Level Expression Of The Brugia Malayi Protein Kinase, Bm-Mpk 1, In Insect Sf9 Cells, Arti Rana

Theses, Dissertations and Culminating Projects

Lymphatic Filariasis (elephantiasis) is a neglected tropical disease caused by the filarial nematodes Brugia malayi (B. malayi), Brugia timori, and Wuchererici Bancrofti (1,8). These parasites are present in over 83 counties in the tropics and sub-tropics where more than 1.4 billion people are at risk of infection and 130 million people are presently infected (1,7). Previous work from our lab has led to the identification and expression of a B. malayi stress-activated protein kinase, Bm-MPKl (a human p38/C. elegans PMK-1 ortholog). Bm-MPKl plays an important role in the parasites’ protection against oxidative stress (1), and as such is a potential …

Graphene-Like 2-D Nanomaterials And Their Properties, Diana Daikie Aggudey

Theses, Dissertations and Culminating Projects

Graphene, unlike other carbon allotropes has recently been the subject of interest in the field of nano material research. Graphene is being utilized as the building block for graphitic materials such as the 0-D fullerenes, 1-D nanotubes and 3-D graphites. Graphene is a single layer material, made up of interconnected hexagons of sp bonded carbon atoms arranged in a honeycomb crystal lattice. Graphene and its derivatives have been shown in previous studies/research to exhibit exceptional high electronic and thermal conductivity, optical transparency and high specific surface area additional to outstanding mechanical flexibility and environmental stability. Graphene is amongst the most …

Geochemical And Rock-Magnetic Analyses Of Kasten Cores And Surface Grab Samples From The Joinville-D'Urville Trough, Northeastern Antarctic Peninsula : Results And Correlation With The Western Antarctic Peninsula, Rachel B. Darley

Theses, Dissertations and Culminating Projects

Two sediment cores were recovered from the Joinville-d’Urville Trough on the Northeastern Antarctic Peninsula (AP) during United States Antarctic Program cruise LMG04-04. KC3 was recovered from a sediment drift off Joinville Island. KC16 was recovered from a small basin west of the drift. Both cores show a two-part magnetic susceptibility profile: the upper section shows regularly spaced highs and lows, followed by a large amplitude drop. The susceptibility profiles of these two cores are similar to those found on the western side of the AP. The purpose of this study is to determine whether the same processes drive magnetic susceptibility …

Hydrologic Modeling In Semi-Arid Agricultural Region : An Integrated Approach To Study Water Resources In Southern San Joaquin Valley, California, Sagarika Roy

Theses, Dissertations and Culminating Projects

Drought is one of the most severe natural hazards in the world. This research aims at assessing the limited water resources for better crop-water irrigation and conservation of a drought affected agricultural area in California.

Evapotranspiration (ET) is one of the most important parameter to study crop water use for irrigation scheduling and water management. The remote sensing based ET estimation using Surface Energy Balance Algorithm for Land (SEBAL) is the efficient way to understand crop water use. Crop Water Stress Index (CWSI) quantifies plant stress under different field conditions. The remote sensing approach allows efficient irrigation by applying water …

Investigating The Biochemical And Catalytic Properties Of Nitrile Hydratases, Salette Martinez

Dissertations

Chemical and pharmaceutical industries make extensive use of amide compounds for the manufacture of commodity chemicals (e.g., acrylamide) and drug intermediates (e.g., nicotinamide). Production of amide compounds is typically achieved by the hydration of nitrile compounds under acidic or basic conditions, high temperatures, and copper catalysts. However, the use of such chemical methods leads to the generation of unwanted by-products and toxic wastes, in addition to low product yields and high production costs. An alternative route for amide production is the use of a natural catalyst, for example nitrile hydratases (NHase, E.C. 4.2.1.84). NHase is a metalloenzyme that efficiently converts …