Physical Sciences and Mathematics Commons^™

Improving Virtual Machine I/O Performance In Cloud Environments Via I/O Functionality Offloading, Sahan Bamunavita Gamage

Open Access Dissertations

In recent years there has been a rapid growth in the adoption of cloud computing. A key technology that drives cloud computing is virtualization. In addition to enabling multi-tenancy in cloud environments, virtualizing hosts in the cloud environments has made management of hardware resources increasingly flexible. An important consequence of virtualizing hosts in the cloud is the negative impact it has on the I/O performance of the applications running in the virtual machines.

In this dissertation, we address the important problem of alleviating the negative impact of virtualization on I/O of the virtual machines. First, we show that virtual machine …

Disk Diffusion Breakpoint Determination Using A Bayesian Nonparametric Variation Of The Errors-In-Variables Model, Glen Richard Depalma

Open Access Dissertations

Drug dilution (MIC) and disk diffusion (DIA) are the two most common antimicrobial susceptibility tests used by hospitals and clinics to determine an unknown pathogen's susceptibility to various antibiotics. Both tests use breakpoints to classify the pathogen as either susceptible, indeterminant, or resistant to each drug under consideration. While the determination of these drug-specific MIC classification breakpoints is straightforward, determination of comparable DIA breakpoints is not. It is this issue that motivates this research.

Traditionally, the error-rate bounded (ERB) method has been used to calibrate the two tests. This procedure involves determining DIA breakpoints which minimize the observed discrepancies between …

Measurement Of A Weak Transition Moment Using Coherent Control, Dionysios Antypas

Open Access Dissertations

We have developed a two-pathway Coherent Control technique for measurements of weak optical transition moments. We demonstrate this technique through a measurement of the transition moment of the highly-forbidden magnetic dipole transition between the 6s²S_1/21/2 and 7s²S_1/21/2 states in atomic Cesium. The experimental principle is based on a two-pathway excitation, using two phase-coherent laser fields, a fundamental field at 1079 nm and its second harmonic at 539.5 nm. The IR field induces a strong two-photon transition, while the 539.5 nm field drives a pair of weak one-photon transitions: a Stark-induced transition of …

Environmental Tradeoffs In Bioenergy Production And Agricultural Practices, Alicia Lynn English

Open Access Dissertations

The focus of this dissertation is the environmental tradeoffs of stover removal within the Corn Belt. The environmental tradeoffs considered are mainly concerned with managing soil erosion and soil quality. The analysis layers soil characteristics, management strategies and per acre costs using an integrated RUSLE2/WEPS model and an economic optimization model to illuminate a lower bound supply response. Different assumptions were tested in regards to sustainability, prices, and market integration for five states and 18,760 soil types throughout the Corn Belt. Sustainability was defined to limit soil erosion from wind and water to 5 tons/acre/year and the soil organic matter …

Nanoscale Semiconductor Materials And Devices Employing Hybrid 1d And 2d Structures For Tunable Electronic And Photonic Applications, Suprem Ranjan Das

Open Access Dissertations

Das, Suprem R. Ph.D., Purdue University, December 2013. Nanoscale Semiconductor Materials and Devices employing Hybrid 1D and 2D structures for Tunable Electronic and Photonic Applications. Major Professor: Dr. David B. Janes.

Continued miniaturization of microelectronic devices over past decades has brought the device feature size towards the physical limit. Likewise, enormous `waste energy' in the form of self-heating in almost all of the electronic and optoelectronic devices needs an `energy-efficient low power' and `high performance' material as well as device with alternate geometry. III-V semiconductors are proven to be one of the alternate systems of materials for various applications including …

Spectroscopic And Kinetic Study Of Copper-Exchanged Zeolites For The Selective Catalytic Reduction Of Nox With Ammonia, Shane Adam Bates

Open Access Dissertations

The recent application of metal-exchanged, small-pore zeolites for use in the selective catalytic reduction (SCR) of NO_x with ammonia NH₃ for automotive deNO_x applications has been a great stride in achieving emission standard goals. Copper-exchanged SSZ-13 (Cu-SSZ-13), the small-pore zeolite in this study, has been shown to be very hydrothermally stable and active under conditions presented in the exhaust of the lean-burn diesel engine. In this work, detailed studies were performed to identify many aspects of the active site(s) in Cu-SSZ-13 in order to learn about the standard SCR mechanism.

A series of seven Cu-SSZ-13 samples were …

Reasoning Across Language And Vision In Machines And Humans, Andrei Barbu

Open Access Dissertations

Humans not only outperform AI and computer-vision systems, but use an unknown computational mechanism to perform tasks for which no suitable approaches exist. I present work investigating both novel tasks and how humans approach them in the context of computer vision and linguistics. I demonstrate a system which, like children, acquires high-level linguistic knowledge about the world. Robots learn to play physically-instantiated board games and use that knowledge to engage in physical play. To further integrate language and vision I develop an approach which produces rich sentential descriptions of events depicted in videos. I then show how to simultaneously detect …

An Epidemic Model Structured By The Time Since Last Infection, Jorge Alturo Alfaro Murillo

Open Access Dissertations

Epidemiological models structured by time since infection have their origin in the seminal work of 1927 by Kermack and McKendrick. Compared to ordinary differential equations (ODE) models, they are able to capture differences in infectivity of the individuals in a more suitable manner. Their use declined in the second half of the 20th century, probably because the theory for ODE models is more robust, complete and has proved successful in providing insights and predictions for many epidemiological problems. Nevertheless, it is important to understand in what occasions the inclusion of time since infection may alter the outcomes in a significant …

Direct And Indirect Greenhouse Gas Emissions From Biomass Storage: Implications For Life Cycle Assessment Of Biofuels, Isaac Robert Emery

Open Access Dissertations

Ethanol and other biofuels from cellulosic feedstocks are currently the most promising candidates to replace a large fraction of gasoline consumption in the United States and reduce greenhouse gas emissions. Gaps in current approaches to estimating the net greenhouse gas emissions from second-generation biofuels may lead to underestimation of the carbon intensity of these fuels. Current life cycle assessment models of biofuels do not sufficiently account for biomass losses and emissions associated with the harvest and storage of biomass feedstocks, which can require additional fuel and materials use on the farm as well as reducing the effective yield of a …

Characterization Of Fractures Subjected To Normal And Shear Stress, Min-Kwang Choi

Open Access Dissertations

Results from a series of laboratory experiments to determine fracture specific stiffness, for a fracture subjected to shear and normal stress, are presented and analyzed. The experimental work focuses on the determination of relations between normal and shear fracture specific stiffness and between spatial distribution of fracture specific stiffness and fluid flow through the fracture

The ratio of shear to normal fracture specific stiffness is experimentally investigated on a fracture subjected to shear as well as normal stress. Synthetic fractures made of gypsum and lucite were prepared with different fracture surface conditions: either well-mated or non-mated. For well-mated fracture surfaces, …

Peridynamic Modeling Of Coupled Mechanical Deformations And Transient Flow In Unsaturated Soils, Rami Jabakhanji

Open Access Dissertations

A coupled peridynamic model for mechanical deformations and transient moisture flow in unsaturated soils is developed. The model is capable of simulating the emergence and evolution of cracks triggered by volumetric strains in the soil which are associated with changes in moisture content. The development of our model is motivated by the need for a tool to analyze and evaluate the impact of dessication cracks on the movement of moisture and the mechanical properties of soils at the field scale. The model is based on the peridynamic reformulation of elasticity proposed by Silling for simulating the deformation of bodies with …

Efficient Spectral-Element Methods For Acoustic Scattering And Related Problems, Ying He

Open Access Dissertations

This dissertation focuses on the development of high-order numerical methods for acoustic and electromagnetic scattering problems, and nonlinear fluid-structure interaction problems.

For the scattering problems, two cases are considered: 1) the scattering from a doubly layered periodic structure; and 2) the scattering from doubly layered, unbounded rough surface. For both cases, we first apply the transformed field expansion (TFE) method to reduce the two-dimensional Helmholtz equation with complex scattering surface into a successive sequence of the transmission problems with a plane interface. Then, we use Fourier-Spectral method in the periodic structure problem and Hermite-Spectral method in the unbounded rough surface …

Improving Reuse In Software Development For The Life Sciences, Nicholas Vincent Iannotti

Open Access Dissertations

The last several years have seen unprecedented advancements in the application of technology to the life sciences, particularly in the area of data generation. Novel scientific insights are now often driven primarily by software development supporting new multidisciplinary and increasingly multifaceted data analysis. However, despite the availability of tools such as best practice frameworks, the current rate of software development is not able to keep up with the needs of scientists. This bottleneck in software development is largely due to code reuse generally not being applied in practice.

This dissertation presents Legwork, a class library of reuse-optimized design pattern implementations …

Electric Machine Differential For Vehicle Traction Control And Stability Control, Sandun Shivantha Kuruppu

Open Access Dissertations

Evolving requirements in energy efficiency and tightening regulations for reliable electric drivetrains drive the advancement of the hybrid electric (HEV) and full electric vehicle (EV) technology. Different configurations of EV and HEV architectures are evaluated for their performance. The future technology is trending towards utilizing distinctive properties in electric machines to not only to improve efficiency but also to realize advanced road adhesion controls and vehicle stability controls. Electric machine differential (EMD) is such a concept under current investigation for applications in the near future. Reliability of a power train is critical. Therefore, sophisticated fault detection schemes are essential in …

Response Of Plasma Facing Components In Tokamaks Due To Intense Energy Deposition Using Particle-In-Cell(Pic) Methods, Filippo Genco

Open Access Dissertations

Damage to plasma-facing components (PFC) due to various plasma instabilities is still a major concern for the successful development of fusion energy and represents a significant research obstacle in the community. It is of great importance to fully understand the behavior and lifetime expectancy of PFC under both low energy cycles during normal events and highly energetic events as disruptions, Edge-Localized Modes (ELM), Vertical Displacement Events (VDE), and Run-away electron (RE). The consequences of these high energetic dumps with energy fluxes ranging from 10 MJ/m2 up to 200 MJ/m2 applied in very short periods (0.1 to 5 ms) can be …

The Role Of Resource Predictability In The Metapopulation Dynamics Of Insects, Byju Nambidiyattil Govindan

Open Access Dissertations

The metapopulation paradigm has emerged as an important tool to understand the dynamics of species living in fragmented landscapes. In this dissertation, I investigate the unpredictable nature of resource availability for species living in human-dominated heterogeneous and dynamic landscapes in the context of its consequences for long-term regional persistence of species. In particular, I test theoretical advancements in metapopulation ecology following a two-pronged approach - via experiments in the lab and observations in the field - using insects. In chapter 1, I introduce the concept of metapopulation ecology in the context of its relevance for dynamics of species living in …

Influence Of Cholesterol And Bilayer Asymmetry On Membrane Protein Distribution In Polymer-Tethered Raft-Mimicking Lipid Membranes, Noor Fueza Hussain

Open Access Dissertations

It is now widely recognized that lipid rafts, which are membrane domains enriched in cholesterol (CHOL) and sphingolipids (SL), play a significant functional role in the plasma membrane. Raft domains particularly affect membrane functionality by causing sequestering of membrane proteins. Underlying mechanisms of raft-associated membrane protein sequestration remain elusive, due to the complexity, transient nature, and small size of raft domains in cellular membranes. To address these challenges, this dissertation unveils the relationship between lipid raft composition and membrane protein sequestration and function using raft-mimicking model membrane mixtures comprised of coexisting liquid-ordered (lo) and liquid-disordered (ld) domains with reconstituted membrane …

Modeling The Atomic And Electronic Structure Of Metal-Metal, Metal-Semiconductor And Semiconductor-Oxide Interfaces, Ganesh Krishna Hegde

Open Access Dissertations

The continuous downward scaling of electronic devices has renewed attention on the importance of the role of material interfaces in the functioning of key components in electronic technology in recent times. It has also brought into focus the utility of

atomistic modeling in providing insights from a materials design perspective. In this thesis, a combination of Semi Empirical Tight-Binding (TB), first-principles Density

Functional Theory and Reactive Molecular Dynamics (MD) modeling is used to study aspects of the electronic and atomic structure of three such 'canonical' material interfaces - Metal-Metal, Metal-Semiconductor and Semiconductor oxide interfaces.

An important contribution of this thesis …

Exploring The Effects Of Conversational Repair As A Scaffolding Strategy To Promote Mathematics Explanations Of Students With Learning Disabilities, Jia Liu

Open Access Dissertations

Conversational repair often occurs in conversations when people attempt to address communicative breakdowns or inaccuracy by way of repeating what have been said or putting them in another way. The review of literature on conversational repair revealed that as an important concept in pragmatic aspect of language, it is an effective strategy to improve communication of different populations with disabilities. However, it is rarely studied in the domain of mathematics and with the population with learning disabilities/difficulties (LD). In current reform-based, discourse-oriented mathematics classrooms, students with LD encounter difficulties articulating or explaining well their reasoning processes due to the mathematical …

Mispronunciation Detection For Language Learning And Speech Recognition Adaptation, Zhenhao Ge

Open Access Dissertations

The areas of "mispronunciation detection" (or "accent detection" more specifically) within the speech recognition community are receiving increased attention now. Two application areas, namely language learning and speech recognition adaptation, are largely driving this research interest and are the focal points of this work.

There are a number of Computer Aided Language Learning (CALL) systems with Computer Aided Pronunciation Training (CAPT) techniques that have been developed. In this thesis, a new HMM-based text-dependent mispronunciation system is introduced using text Adaptive Frequency Cepstral Coefficients (AFCCs). It is shown that this system outperforms the conventional HMM method based on Mel Frequency Cepstral …

Long-Term Disturbance Histories Of Managed And Natural Mixed-Hardwood Forests Of Central Indiana, Robert Charles Morrissey

Open Access Dissertations

Over the course of the last century, we have observed changes in forest composition and structure related to changes in disturbance regimes. Reduced frequency and severity of disturbance events has allowed for the ingrowth of shade-tolerant, mesophytic species into forest understories; the result is shifting species compositions and changes in forest structure. In some cases, the loss of masting species, such as oak (Quercus spp.) and hickory (Carya spp.), may also accompany a shift in forest function and further accommodate other species shifts among mammal, insect, and bird populations. Management efforts have been suggested as a possible means …

The Effect Of Composition On The Linear And Nonlinear Mechanical Properties Of Particulate Filled Elastomers, Oluwaseyi Ogebule

Open Access Dissertations

Engineering elastomers are materials capable of undergoing large deformation upon load application and recovering upon load removal. From car tires to building vibration isolator systems, elastomers are the most versatile of engineering materials. The inclusion of particulate fillers into elastomers enhances their mechanical properties (modulus, tensile strength, toughness, tear resistance, etc) thereby extending their applicability to more demanding functions. The automotive, healthcare, construction, adhesives and consumer products are some of the many industries that produce finished goods containing elastomeric parts.

Despite the various concepts on reinforcement in filled elastomers, a complete understanding of their linear viscoelastic properties and the nonlinear …

Enabling Richer Insight Into Runtime Executions Of Systems, Karthik Swaminathan Nagaraj

Open Access Dissertations

Systems software of very large scales are being heavily used today in various important scenarios such as online retail, banking, content services, web search and social networks. As the scale of functionality and complexity grows in these software, managing the implementations becomes a considerable challenge for developers, designers and maintainers. Software needs to be constantly monitored and tuned for optimal efficiency and user satisfaction. With large scale, these systems incorporate significant degrees of asynchrony, parallelism and distributed executions, reducing the manageability of software including performance management. Adding to the complexity, developers are under pressure between developing new functionality for customers …

Non-Parametric Spatial Models, Cheng Liu

Open Access Dissertations

Covariance functions play a central role in spatial statistics. Parametric covariance functions have been used in most of the existing works on the analysis of spatial data. The primary reason for this is that the classes of parametric covariance functions guarantee that the fitted covariance function is positive definite. In this dissertation, I undertake two non-parametric approaches to modelling the covariance functions.

Our approach is motivated by problems that arise in spatial data analysis in recent years. First, it is nontrivial to choose a parametric family among many parametric families of covariance function. A non-parametric covariance function circumvents this problem. …

Impact Of Network Protocols On Data Center Applications, Pawan Prakash

Open Access Dissertations

Data centers containing hundreds of thousands of servers have become the foundation of modern computing infrastructures. Enterprises are increasingly deploying new applications and moving existing applications to these large-scale data centers. These networked applications communicate via a set of conventional network protocols, which were originally designed for wide area networks. In this dissertation, we study the impact of different networking layer protocols on the performance of data center applications.

At the transport layer, we observe that bandwidth sharing via TCP in commodity data center networks, which are organized in multi-rooted tree topologies, can lead to severe unfairness under many common …

Construction And Demonstration Of A Tandem Mass Spectrometer Based Instrument For Cold Ion Spectroscopy, James Gerhardt Redwine

Open Access Dissertations

A new instrument incorporating ion trap based tandem mass spectrometry and cold ion UV and UV-IR double resonance spectroscopy has been developed at Purdue University for the study of gas phase, biologically relevant ions. The instrument incorporates multiple quadrupole linear ion trap mass analyzers to prepare and isolate the precursor ions as well as to analyze the resultant photofragments. A 22-pole ion trap cooled to 5 K via a closed cycle helium cryostat is used to cool the ions for spectroscopic interrogation. Results show the vibrational and rotational temperature of a wide assortment of ions to be 12±2 K.

The …

Redefining The Operation And Design Considerations Of Organic Solar Cells: Role Of Morphology And Defect States, Biswajit Ray

Open Access Dissertations

Organic photovoltaic (OPV) technology is currently a topic of great interest for potentially low cost solar energy conversion and possibility of many novel PV applications (e.g., building-integrated PV, portable solar cells). Successful commercialization of this technology, however, will require significant improvement in efficiency and lifetime. In the last few years, innovation in novel polymer synthesis has raised the efficiency of OPV above 10%, at par with a-Si and earth-abundant solar cells. Further improvement in performance relies on breakthroughs in device design, which requires profound understanding of the physics of device operation. A major challenge in the design of the state …

Continued Progress Towards Efficient Syntheses Of Cephalostatin North 1 Analogs, Daniel Preston Jamieson

Open Access Dissertations

Jamieson, Daniel P. Ph.D., Purdue University, December 2013. Continued Progress Towards Efficient Syntheses of Cephalostatin North 1 Analogs. Major Professor: PhilipL. Fuchs.

The cephalostatins and ritterazines represent an intriguing class of marine natural products in both structure and biological activity, and the progress towards the synthesis of high valued analogs with a focus on process orientated methodology is described herein. Included in the pages to follow, is the further advancement of the `Red-Ox' strategy toward the highly efficient synthesis of 25-epi-4,15-dihydro-North 1, Chapter 2. A short review focusing on the earlier efforts toward the main synthetic challenges of North 1 …

Elucidation Of Chiral Recognition Mechanisms Of Solutes By Amylose Tris[(S)-Alpha-Methylbenzylcarbamate] Sorbent, Hung-Wei Tsui

Open Access Dissertations

Enantioselective separations of chiral molecules are important in various chemical fields, such as pharmaceuticals and agrochemicals industries. Polysaccharide-based sorbents have been widely used in chiral liquid chromatography. The recognition mechanisms which determine their enantioselectivities are not completely understood.

In this dissertation, the chiral recognition mechanisms of a widely used commercial sorbent, amylose tris[(S)-alpha-methylbenzylcarbamate], for benzoin (B) enantiomers were first studied. The HPLC data for benzoin with pure n-hexane as the mobile phase have been obtained. The behavior of sorbent-solute-hexane systems can be interpreted by considering only sorbent solute two-component interactions. Infrared (IR) spectra showed evidence of substantial hydrogen bonding (H-bonding) …

Design, Synthesis, And Evaluation Of Molecular Inhibitors For Biologically Relevant Enzymes, Sarah Emma St. John

Open Access Dissertations

The work in this thesis details the design, synthesis, and biological evaluation of molecular inhibitors for the inhibition of biologically relevant enzymes. The first three chapters of this thesis concern the polyphenol resveratrol and its inhibition of the quinone reductase 2 (QR2) enzyme. The work on this subject resulted in the complete design, synthesis, biological and structural evaluation of a second generation library of resveratrol analogues. From this work we identified a novel resveratrol analogue that inhibits QR2 in a previously unknown binding orientation. The fourth chapter of this thesis details the de novo design of molecules for the inhibition …