Physical Sciences and Mathematics Commons^™

Bronx River Restoration: Report And Assessment, Nicole Marshall

Student Theses 2001-2013

No abstract provided.

Energetic Particles And Magnetohydrodynamic Activity In The Swarthmore Spheromak Experiment, G. Qin, Vyacheslav S. Lukin , '00, C. D. Cothran, Michael R. Brown, W. H. Matthaeus

Physics & Astronomy Faculty Works

Results from the Swarthmore Spheromak Experiment (SSX) [M. R. Brown, Phys. Plasmas 6, 1717 (1999)] indicate that formation and partial merging of two spheromak plasmas can be described well by a magnetohydrodynamic (MHD) picture in which there is substantial evolution towards force free states within each vessel, while reconnection activity, also described reasonably well by MHD, occurs in the region of interaction. MHD simulations [V. S. Lukin , Phys. Plasmas 8, 1600 (2001)] support and provide further detail to this interpretation. In the present study, test particle equations are integrated using MHD data from SSX simulations to further understand the …

Marginal Regression Of Gaps Between Recurrent Events, Yijian Huang, Ying Qing Chen

U.C. Berkeley Division of Biostatistics Working Paper Series

Recurrent event data typically exhibit the phenomenon of intra-individual correlation, owing to not only observed covariates but also random effects. In many applications, the population can be reasonably postulated as a heterogeneous mixture of individual renewal processes, and the inference of interest is the effect of individual-level covariates. In this article, we suggest and investigate a marginal proportional hazards model for gaps between recurrent events. A connection is established between observed gap times and clustered survival data, however, with informative cluster size. We then derive a novel and general inference procedure for the latter, based on a functional formulation of …

Marginal And Parametric Analysis Of The Central Optimal Solution, Allen G. Holder, J F. Sturm, S Zhang

Mathematics Faculty Research

In this paper we investigate the sensitivity analysis of the parameterized central path. First, a complete marginal analysis of the central optimal solution is developed. This analysis explains the differential properties of the central optimal solution with respect to both the cost coefficients and the right-hand side components. We also show that the marginal derivatives are uniformly bounded. Second, we present three conditions for which the parameterized central path converges. Two of these results allow the difficult situation of simultaneous perturbations in the cost coefficients and right-hand side levels.

Groundwater Study Of The Tambellup Townsite, Ben Whitfield

Resource management technical reports

A groundwater study of the townsite of Tambellup. It aimed to accelerate the implementation of effective salinity management options. The study consisted of drilling investation and installation of a piezometer network, a pumping test, groundwater flow modelling and a flood risk analysis.

Application Of Morphometric Relationships To Active Flow Networks Within The Mammoth Cave Watershed, John Glennon

Masters Theses & Specialist Projects

Numerous quantitative relationships have been formulated to describe the nature of surface-drainage networks. These parameters have been used in various studies of geomorphology and surface-water hydrology, such as flood characteristics, sediment yield, and evolution of basin morphology. Little progress has been made in applying these quantitative descriptors to karst flow systems due to the lack of sufficiently complete data and inadequate technology for processing the large, complex data sets. However, as a result of four decades of investigation, an abundance of data now exists for the Mammoth Cave Watershed providing the opportunity for broader quantitative research in the organization of …

The Probe, Issue 219 – November/December 2001

The Probe: Newsletter of the National Animal Damage Control Association

Oversight of Wildlife Damage Control Operators
Oversight of the Wildlife Control Industry -- Tim Mien, President, NWCOA
Oversight of the Wildlife Control Industry: Regulatory and Statutory Standards as Recommendations to the States -- John Hadidian & Michele Childs, The Humane Society of the United States
Coyote Attacks Increasing in California -- Nicki Frey
Ranchers, hunters, farmers and environmentalists in eastern Idaho have agreed to a plan for managing grizzly bears in the state should they be removed from the federal Endangered Species list.
Bobby R. Acord is the new Administrator for the USDA Animal and Plant Health Inspection Service.
Graduate …

Interpreting Fracture Patterns In Sandstones Interbedded With Ductile Strata At The Salt Valley Anticline, Arches National Park, Utah, John C. Lorenz, Scott P. Cooper

All U.S. Government Documents (Utah Regional Depository)

Sandstones that overlie or that are interbedded with evaporitic or other ductile strata commonly contain numerous localized domains of fractures, each covering an area of a few square miles. Fractures within the Entrada Sandstone at the Salt Valley Anticline are associated with salt mobility within the underlying Paradox Formation. The fracture relationships observed at Salt Valley (along with examples from Paleozoic strata at the southern edge of the Holbrook basin in northeastern Arizona, and sandstones of the Frontier Formation along the western edge of the Green River basin in southwestern Wyoming), show that although each fracture domain may contain consistently …

Fisheries Research Report No. 130 - Environmental Requirements And Tolerances Of Rainbow Trout (Oncorhynchus Mykiss) And Brown Trout (Salmo Trutta) With Special Reference To Western Australia: A Review, Brett W. Molony

Fisheries Research Reports

Both Oncorhynchus mykiss (rainbow trout) and Salmo trutta (brown trout) have a long history of translocation and culture and a wide knowledge base exists. O.mykiss is being considered as a candidate for inland aquaculture in the salinity affected areas of southern Western Australia and this review aims, in part, at providing relevant information to those considering a trout-framing venture in Western Australia. Both species of trout can survive a wide range of environmental conditions, including temperature, salinity, pH, dissolved oxygen and ammonia, with O.mykiss having a higher temperature tolerance than S.trutta. However, within the ranges of environmental conditions, each species …

Modeling Control Of Hiv Infection Through Structured Treatment Interruptions With Recommendations For Experimental Protocol, Shannon Kubiak, Heather Lehr, Rachel Levy, Todd Moeller, Albert Parker, Edward Swim

All HMC Faculty Publications and Research

Highly Active Anti-Retroviral Therapy (HAART) of HIV infection has significantly reduced morbidity and mortality in developed countries. However, since these treatments can cause side effects and require strict adherence to treatment protocol, questions about whether or not treatment can be interrupted or discontinued with control of infection maintained by the host immune system remain to be answered. We present sensitivity analysis of a compartmental model for HIV infection that allows for treatment interruptions, including the sensitivity of the compartments themselves to our parameters as well as the sensitivity of the cost function used in parameter estimation. Recommendations are made about …

Knowledge Discovery In Biological Datasets Using A Hybrid Bayes Classifier/Evolutionary Algorithm, Michael L. Raymer, Leslie A. Kuhn, William F. Punch

Kno.e.sis Publications

A key element of bioinformatics research is the extraction of meaningful information from large experimental data sets. Various approaches, including statistical and graph theoretical methods, data mining, and computational pattern recognition, have been applied to this task with varying degrees of success. We have previously shown that a genetic algorithm coupled with a k-nearest-neighbors classifier performs well in extracting information about protein-water binding from X-ray crystallographic protein structure data. Using a novel classifier based on the Bayes discriminant function, we present a hybrid algorithm that employs feature selection and extraction to isolate salient features from large biological data sets. The …

Fisheries Research Report No. 127 - A 12-Month Survey Of Recreational Fishing In The Peel-Harvey Estuary Of Western Australia During 1998-99, B E. Malseed, Neil R. Sumner

Fisheries Research Reports

A survey of recreational boat-based and shore-based fishing in the Peel-Harvey Estuary was conducted between August 1998 and July 1999. During the survey 1,996 interviews were conducted at boat ramps. Of these, 1,136 boats had been crabbing and 136 angling in the estuary (43 were both crabbing and angling). In addition to the interviews at boat ramps, 909 shore-based fishing parties were interviewed.

The survey estimated the total annual boat-based recreational fishing effort as 126,000 fisher days, with 88% of this effort targeting blue swimmer crabs. The total annual shore-based recreational fishing effort was estimated to be 191,000 fisher days, …

Fisheries Research Report No. 129 - Morphology And Incidence Of Yabby (Cherax Albidus) Burrows In Western Australia, Craig S. Lawrence

Fisheries Research Reports

Yabby (Cherax albidus) burrows were recorded from dams, channels and ponds in Western Australia. Twenty five sites were sampled during Spring, 1998 and the burrow morphology and density was described from six of these locations where burrows were present. To improve the sample size and address seasonal trends 49 commercially harvested yabby dams were sampled over the summer of 1999/2000 and the number and density of yabby burrows were recorded. Burrow incidence and morphology was also recorded from 25 research ponds at the Avondale Research Station between 1995-1997. Soil and water chemistry values are presented and their relationships with burrow …

Design And Construction Of A Space-Borne Optical Tweezer Apparatus, Andrew Resnick

Physics Faculty Publications

A compact optical tweezer package has been developed for use on a microscope to be flown on the International Space Station as part of a series of experiments in colloid crystallization. A brief introduction to the principles of single-beam optical tweezer operation will be presented, after which a detailed system layout will be shown. Special design requirements due to the spaceflight nature of the hardware will also be discussed. The tweezer apparatus is capable of trapping many particles through use of a two-axis acousto-optical deflector. The trap strength is sufficient to perform the required science (50 pN at Δn=0.2). The …

Component-Based Software Development, Luiz Fernando Capretz, Miriam Capretz, Dahai Li

Electrical and Computer Engineering Publications

Component-based software development (CBSD) strives to achieve a set of pre-built, standardized software components available to fit a specific architectural style for some application domain; the application is then assembled using these components. Component-based software reusability will be at the forefront of software development technology in the next few years. This paper describes a software life cycle that supports component-based development under an object-oriented framework. Development time versus software life cycle phases, which is an important assessment of the component-based development model put forward, is also mentioned.

Local Impurity-Assisted Conductance In Magnetic Tunnel Junctions, Evgeny Y. Tsymbal, David G. Pettifor

Evgeny Tsymbal Publications

Using a simple tight-binding model and the Kubo formula we have calculated the lateral distribution of the tunneling conductance across a magnetic tunnel junction probed by STM. We find that the presence of an isolated impurity within the barrier layer can cause a spike in the conductance distribution, which is in agreement with recent experiments. We show that the local tunneling magnetoresistance (TMR) is very sensitive to the electronic state of the impurity and to the lateral position of the tip. The latter dramatic variation in TMR could be detected by STM.

Groundwater Study Of The Lake Grace Townsite, Damien Addison

Resource management technical reports

A groundwater study was carried out at the Lake Grace townsite to accelerate the implementation of effective salinity management options. The study consisted of a drilling investigation, expansion of a piezometer network, a pumping test, groundwater flow modelling and flood risk analysis.

A Robotic Wide-Angle Hα Survey Of The Southern Sky, John E. Gaustad, P. R. Mccullough, W. Rosing, D. Van Buren

Physics & Astronomy Faculty Works

We have completed a robotic wide-angle imaging survey of the southern sky (delta = +15 degrees to -90 degrees) at 656.3 nm wavelength, the H alpha emission line of hydrogen. Each image of the resulting Southern H alpha Sky Survey Atlas (SHASSA) covers an area of the sky 13 degrees square at an angular resolution of approximately 0.'8 and reaches a sensitivity level of 2 R (1.2 x 10(-17) ergs cm(-2) s(-1) arcsec(-2)) pixel(-1), corresponding to an emission measure of 4 cm(-6) pc and to a brightness temperature for microwave free-free emission of 12 muK at 30 GHz. Smoothing over …

Field Evaluation Of Sounding Accuracy In Deep Water Multibeam Swath Bathymetry, Christian De Moustier

Center for Coastal and Ocean Mapping

A new Kongsberg-Simrad EM120 multibeam echo-sounder has been installed aboard Scripps Institution of Oceanography's Research Vessel Roger Revelle in January 2001. This system can map reliably a 20 km swath of seafloor in 4000 m water depth with 191 soundings per ping. Such a wide swath width demands highly accurate (<0.05' RMS) roll information from a motion sensor, and makes estimating sounding accuracy across the swath an interesting challenge. It is shown that good accuracy estimates can be obtained by collecting data on station under control of the GPS-aided dynamic positioning system usually available on most modern long-range oceanographic vessels. A number of motion sensors, with RMS roll accuracy specifications ranging from 0.05' to 0.01' ,were tested with the EM120 sonar on station in 3800 m to 4000 m water depths. Unexpectedly, they yielded roughly the same depth uncertainty as a function of receive beam angle. This result might be explained by synchronization errors between the attitude data and the sonar data leading to beam pointing errors, other types of beam pointing errors, a range of roll accuracy narrower than specified for the motion sensors, or a combination of these factors

Monitoring Subsurface Drainage Flow At Remote Locations, Stephen R. Workman, Stephen F. Higgins, Scott A. Shearer

Biosystems and Agricultural Engineering Faculty Publications

Laboratory evaluations and field results are presented for a slotted weir used to measure discharge from subsurface drains. The head–discharge curve for the vertical slot is a simple power function with an exponent of 1.5. There was excellent agreement (r² > 0.99 and 1:1 slope) between predicted and observed discharge in laboratory testing of 12 test weirs representing five slot widths. The primary advantages of the vertical slot weir are its simplicity, ease of maintenance, and ability to measure small flow rates. Disadvantages include a tendency for the slot to close a small amount over time as a result of …

Thermal Stability Of Isolated And Complexed Ga Vacancies In Gan Bulk Crystals, K. Saarinen, T. Suski, I. Grzegory, David C. Look

Physics Faculty Publications

We have applied positron annihilation spectroscopy to show that 2-MeV electron irradiation at 300 K creates primary Ga vacancies in GaN with an introduction rate of 1 cm^-1. The Ga vacancies recover in long-range migration processes at 500–600 K with an estimated migration energy of 1.5 (2) eV. Since the native Ga vacancies in as-grown GaN survive up to much higher temperatures (1300–1500 K), we conclude that they are stabilized by forming complexes with oxygen impurities. The estimated binding energy of 2.2 (4) eV of such complexes is in good agreement with the results of theoretical calculations.

Electrical Characterization Of 1.8 Mev Proton-Bombarded Zno, F. D. Auret, S. A. Goodman, M. Hayes, M. J. Legodi, H. A. Van Laarhoven, David C. Look

Physics Faculty Publications

We report on the electrical characterization of single-crystal ZnO and Au Schottky contacts formed thereon before and after bombarding them with 1.8 MeV protons. From capacitance–voltage measurements, we found that ZnO is remarkably resistant to high-energy proton bombardment and that each incident proton removes about two orders of magnitude less carriers than in GaN. Deep level transient spectroscopy indicates a similar effect: the two electron traps detected are introduced in extremely low rates. One possible interpretation of these results is that the primary radiation-induced defects in ZnO may be unstable at room temperature and anneal out without leaving harmful defects …

Influence Of Lithophysal Porosity On Stress-Strain Properties Of Topopah Spring Tuff - Numerical Analysis, Nick Hudyma, Moses Karakouzian, Amy J. Smiecinski

Publications (YM)

The purpose of the numerical analysis effort of Task 27 of cooperative agreement DE-FC08-98NV12081 was to investigate the effect of lithophysal porosity on the elastic stress-strain properties of the tuff rock mass. Rock mass properties without lithophysal cavities are designated matrix properties. Rock mass properties with lithophysal cavities are designated effective properties. The analysis will be performed for a 6" by 6" square cross-section with a uniform distribution of lithophysal cavities for a variety of porosities. The analyses will be performed using FLAG 2D version 3.5, a Department of Energy qualified software. The analyses will compare the matrix properties to …

Ca4Iro6, Ca3Mgiro6 And Ca3Zniro6, Matthew J. Davis, Mark D. Smith, Hans Conrad Zur Loye

Faculty Publications

Single crystals of tetracalcium iridium hexaoxide, Ca₄IrO₆, tricalcium magnesium iridium hexaoxide, Ca₃MgIrO₆, and tricalcium zinc iridium hexaoxide, Ca₃ZnIrO₆, were prepared via high-temperature flux growth and structurally characterized by single-crystal X-ray diffraction. The three compounds are isostructural and adopt the K₄CdCl₆ structure type, comprised of chains of alternating face-shared [CaO₆], [MgO₆] or [ZnO₆] trigonal prisms and [IrO₆] octahedra, surrounded by columns of Ca²⁺ ions.

Formula: Ca₄IrO₆, Ca_3.34Mg_0.66IrO₆ and …

A Note On Visualizing Response Transformations In Regression, R. Dennis Cook, David J. Olive

Articles and Preprints

A new graphical method for assessing parametric transformations of the response in linear regression is given. Simply regress the response variable Y on the predictors and find the fitted values. Then dynamically plot the transformed response Y^(λ) against those fitted values by varying the transformation parameter λ until the plot is linear. The method can also be used to assess the success of numerical response transformation methods and to discover influential observations. Modifications using robust estimators can be used as well.

Search For Narrow Diphoton Resonances And For Γγ+W/Z Signatures In Pp̅ Collisions At √S=1.8 Tev, T. Affolder, Kenneth A. Bloom, Collider Detector At Fermilab Collaboration

Kenneth Bloom Publications

We present results of searches for diphoton resonances produced both inclusively and also in association with a vector boson (W or Z) using 100 pb^-1 of pp̅ collisions using the CDF detector. We set upper limits on the product of cross section times branching ratio for both pp̅→ γγ+X and pp̅→ γγ+ W/Z. Comparing the inclusive production to the expectations from heavy sgoldstinos we derive limits on the supersymmetrybreaking scale √F in the TeV range, depending on the sgoldstino mass and the choice of other parameters. Also, using a NLO prediction for the associated …

Polygonal Chains Cannot Lock In 4d, Roxana Cocan, Joseph O'Rourke

Computer Science: Faculty Publications

We prove that, in all dimensions d ≥ 4, every simple open polygonal chain and every tree may be straightened, and every simple closed polygonal chain may be convexified. These reconfigurations can be achieved by algorithms that use polynomial time in the number of vertices, and result in a polynomial number of “moves.” These results contrast to those known for d = 2, where trees can “lock,” and for d = 3, where open and closed chains can lock.

Lower Willamette River Model: Boundary Conditions And Model Setup, Herman G. Rodriguez, Robert Leslie Annear, Scott A. Wells, Chris Berger

Civil and Environmental Engineering Faculty Publications and Presentations

Water Environment Services of Clackamas County is in the process of planning upgrades on several of its sewage treatment plants which discharge into the Lower Willamette River. The goals of the modeling effort are to:

• Gather data to construct a computer simulation model of the Lower Willamette River system including part of the Lower Columbia River and the Willamette River above the Oregon City Falls; Because of the tidal influence in the Lower Willamette River, portions of the Columbia River that might affect the Lower Willamette River water quality were also modeled. Also, a section of the Willamette River …

Upper Spokane River Model: Boundary Conditions And Model Setup, 1991 And 2000, Robert Leslie Annear, Chris Berger, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Washington Department of Ecology is interested in a water quality model for the Upper Spokane River system for use in developing Total Maximum Daily Loads (TMDLs). The goals of this modeling effort are to:

• Gather data to construct a computer simulation model of the Spokane River system including Long Lake Reservoir and the pools behind Nine Mile dam, Upper Falls dam and Upriver dam

• Ensure that the model accurately represents the system hydrodynamics and water quality (flow, temperature, dissolved oxygen and nutrient dynamics)

A hydrodynamic and water quality model, CE-QUAL-W2 Version 3 (Wells, 1997), is being applied …

Variational Transition State Theory Evaluation Of The Rate Constant For Proton Transfer In A Polar Solvent, Robin P. Mcrae, Gregory K. Schenter, Bruce C. Garrett, Zoran Svetlicic, Donald G. Truhlar

Chemistry and Biochemistry Faculty Publications

Variational transition state theory (VTST) is used to calculate rate constants for a model proton transfer reaction in a polar solvent. We start from an explicit description of the reacting solute in a solvent, and we model the effects of solvation on the reaction dynamics by a generalized Langevin equation (GLE) for the solute. In this description, the effects of solvation on the reaction energetics are included in the potential of mean force, and dynamical, or nonequilibrium, solvation is included by solvent friction. The GLE solvation dynamics are approximated by a collection of harmonic oscillators that are linearly coupled to …