Physical Sciences and Mathematics Commons^™

Modeling The Heterogeneous Temporal Dynamics Of Epidemics On Networks, Andrea Joan Allen

Graduate College Dissertations and Theses

Mathematical models of infectious disease are important tools for understanding large-scale patterns of how a disease spreads through a population. Predictions of trends from disease models help guide public health prevention and mitigation measures. Most simple disease models assume that the population is randomly mixed, but real-world populations exhibit heterogeneous patterns in the way people interact. These differences in population structure can be represented by networks. Networks can then be incorporated into disease models by using various interdisciplinary concepts and tools. Yet even network disease models often overlook that populations change over time. In this thesis, two models of infectious …

Drivers And Controls On Soil Carbon Storage In Temperate Forest Soils, Adam Noel

Graduate College Dissertations and Theses

Elevated atmospheric CO2 levels pose a threat the global climate stability but large amounts of carbon can be held within soils worldwide. Forests function to capture carbon and eventually, through litter inputs and decomposition, add this carbon to soil systems. This process is driven by climate, landscape conditions, forest and soil characteristics, that have complex interactions with one another across spatial scales. In this dissertation, I examine drivers of carbon contributions to the mineral soil, via litter decomposition and forest floor carbon pools, and how these contributions vary with forest composition and soil conditions. First, using data from a 10-year …

Characterizing Phosphorus Transport To Agricultural Tile Drains In Vermont, Ryan Andrew Ruggiero

Graduate College Dissertations and Theses

Dairy agroecosystems use subsurface or tile drainage to improve trafficability and crop yield. One of the main concerns of tile drainage is that it acts as a major source of non-point phosphorus (P) pollution because of preferential flow pathways (PFP). PFP are large conduits in the soil that allow rapid movement of water. This reduces contact time infiltrate has with deeper soil horizons, which are not saturated with P and that could act as a sink for this nutrient. Also, PFP are responsible for channeling manure applied at the surface to tile drains. The rate of tile drain installation is …

The Impact Of Prior Exposure To Physics On Students' Transition To Flipped Classrooms With Active Learning, Johnny Gonzalez

Graduate College Dissertations and Theses

The pedagogical approach of the flipped classroom with an active learning model shows great benefit for all students in many disciplines. This study explored the possibility that certain subsets of students may have varying benefits from this model. In this study, we used survey questions to categorize students and analysis of the Forced Concept Inventory (FCI) scores, including normalized gain (NG), to measure learning improvement. In particular, we used a questionnaire with two questions that were used to partition each sub-group. The first group consisted of students that have varying levels of physics knowledge and the second group consisted of …

Measuring Ecosystem Services From Soil Health. Vermont Payment For Ecosystem Services Technical Research Report #1, Alissa C. White, Heather M. Darby, Benjamin Timothy Dube, Bryony Sands, Joshua W. Faulkner, Meredith Albers, Maggie Payne

UVM Extension Faculty Publications

There are a multitude of approaches to evaluating soil health and the soil processes influenced by soil health. As the state of Vermont explores innovative programs that compensate farmers for soil health and associated ecosystem services, the selection of soil health indicators and quantification methods is a foundational first step that influences other aspects of program design. What is measured determines the ecosystem services that can be inferred, the accuracy of data that informs decisions, and programmatic transaction costs. Simply put, what is measured matters. The PES Working Group identified organic matter, bulk density, aggregate stability, greenhouse gas flux from …

A Multiscale Framework For Disentangling The Roles Of Evenness, Density, And Aggregation On Diversity Gradients, Daniel J. Mcglinn, Thore Engel, Shane A. Blowes, Nicholas J. Gotelli, Tiffany M. Knight, Brian J. Mcgill, Nathan J. Sanders, Jonathan M. Chase

College of Arts and Sciences Faculty Publications

Ecology published by Wiley Periodicals LLC on behalf of Ecological Society of America Disentangling the drivers of diversity gradients can be challenging. The Measurement of Biodiversity (MoB) framework decomposes scale-dependent changes in species diversity into three components of community structure: species abundance distribution (SAD), total community abundance, and within-species spatial aggregation. Here we extend MoB from categorical treatment comparisons to quantify variation along continuous geographic or environmental gradients. Our approach requires sites along a gradient, each consisting of georeferenced plots of abundance-based species composition data. We demonstrate our method using a case study of ants sampled along an elevational gradient …

Emulating Agricultural Disease Management: Comparing Risk Preferences Between Industry Professionals And Online Participants Using Experimental Gaming Simulations And Paired Lottery Choice Surveys, Eric M. Clark, Scott C. Merrill, Luke Trinity, Gabriela Bucini, Nicholas Cheney, Ollin Langle-Chimal, Trisha Shrum, Christopher Koliba, Asim Zia, Julia M. Smith

College of Agriculture and Life Sciences Faculty Publications

Mitigating the spread of disease is crucial for the well-being of agricultural production systems. Implementing biosecurity disease prevention measures can be expensive, so producers must balance the costs of biosecurity investments with the expected benefits of reducing the risk of infections. To investigate the risk associated with this decision making process, we developed an online experimental game that simulates biosecurity investment allocation of a pork production facility during an outbreak. Participants are presented with several scenarios that vary the visibility of the disease status and biosecurity protection implemented at neighboring facilities. Certain rounds allowed participants to spend resources to reduce …

Farm Benchmarking: The Application Of Business, Conservation And Labor Indicators, Mark Cannella, Sara Ziegler,, Qingbin Wang, Mary Peabody, Thomas Leahey, Heather M. Darby

USDA Agricultural Research Service (ARS) Center

Farm benchmarking programs will move Vermont’s food system towards important sustainability outcomes by establishing enhanced monitoring of priority indicators and facilitating the adoption of best practices. Farmers, researchers, policy agencies and development professionals agree there is a lack of regular and consistent data available to guide private and public initiatives. This paper identifies and contextualizes over forty priority indicators capable of measuring business performance, conservation, farm labor and community development.

Benchmarking methods need to be adapted to better represent the diversity of enterprises present in Vermont’s agricultural portfolio. The integration of University Extension objectives with food systems research priorities can …

Operationalizing Embeddedness For Sustainability In Local And Regional Food Systems, Joe Ament, Daniel Tobin, Scott Merrill, Caitlin Morgan, Cheryl Morse, Tung Liu, Amy Trubek

USDA Agricultural Research Service (ARS) Center

Agricultural systems are deeply embedded in social processes and the institutions that govern them. Measuring these processes and understanding the extent of that embeddedness is critical to crafting policy for sustainable agricultural systems. The bulk of measurement in sustainability research, however, focuses on economic and environmental indicators such as farm profitability and water quality. Since policy is most often aimed at what is measured, it tends to focus on issues like price, production, and market access. And while those are important, policies aimed at social issues such as community reciprocity are often outside the scope of policy design.

The gap …

The Farm-Community Nexus: Metrics For Social, Economic, And Environmental Sustainability Of Agritourism And Direct Farm Sales In Vermont, Lisa Chase, Gillian L. Galford, Jane Kolodinsky, Daniel Tobin, Eric Bishop Von Wettberg, Amy Kelsey, Susanna Baxley, Christopher Brittain, Josiah Taylor

USDA Agricultural Research Service (ARS) Center

Viable working landscapes, vibrant communities, and healthy ecosystems are the building blocks of sustainable food systems. Small and medium farms are connective tissue, creating a system that is greater than the sum of its parts by linking consumers to producers and promoting environmental stewardship. Our approach considers sustainability through connections between farms, their communities, and visitors within an agritourism framework, including on-farm experiences, direct sales of agricultural products, and farmer-consumer interactions at markets. The goal is to contribute to the understanding, operationalization, and integration of metrics built on the ideals that viable, sustainable, and resilient food systems must support social, …

Master's Project: The Green Burial Movement & Conservation Burial Grounds, Katherine B. Berdan

Rubenstein School Masters Project Publications

This Master’s project investigates the green burial movement and its relevance as a tool for land conservation organizations. This movement has the potential to change the standard cemetery landscape in the United States by informing consumers of alternative practices and materials that support natural environmental processes and sustainable land management practices. Until a decade ago, the green burial movement had largely taken place at the community and individual level. It is now an established and growing national movement with certifying organizations, standards and practices, and strategic goals. Opportunities exist within this movement to develop partnerships between the burial grounds and …

Master’S Project: Exploring And Supporting Social And Ecological Dimensions Of Pollinator Habitat Enhancement In Burlington, Vt, Victoria Hellwig

Rubenstein School Masters Project Publications

Urbanization and other manmade impacts threaten critical pollinator species like the bumblebee, whose populations are significantly affected by habitat loss. In response, activists in the City of Burlington are enhancing habitat to increase biodiversity through collaborative partnerships in urban green spaces. In an effort to explore and support pollinator habitat enhancement in Burlington, I examined social interactions involved in a group highly motivated to enhance habitat at Lakeview Cemetery and Champlain Elementary School, with an emphasis on power dynamics and place meanings of these sites. In conjunction with this exploration, I created landscape designs, planted a native habitat garden, and …

Literature Review And Comparative Analysis Of Existing Certification And Training Programs Applicable To Clean Water Project Operations And Maintenance, Marc Companion, Anna Hildebrand, Kristine Stepenuck

Lake Champlain Sea Grant Institute

Stormwater runoff that carries sediments and nutrients is a primary pollutant entering surface waters in the State of Vermont. Phosphorus pollution is driving cyanobacteria blooms in many of our lakes including Lake Champlain, Lake Carmi, and Lake Memphremagog, especially in the warmer months. Warmer weather patterns and an increased frequency of extreme storms are predicted with climate change. As such, there is critical need to take action on the land to minimize and treat stormwater runoff on-site.

The State adopted a Clean Water Act in 2015, which was swiftly followed by a Total Maximum Daily Load (TMDL) for Lakes Champlain …

Soaking Up Stormwater Through Education And Stewardship In The Lake Champlain Basin And Beyond, Lake Champlain Sea Grant, University Of Vermont Extension

Lake Champlain Sea Grant Institute

The health of Lake Champlain and other waterbodies in the Lake Champlain basin, which lies within portions of Vermont, New York and Quebec, are negatively impacted by nonpoint sources of pollution, including phosphorus, nitrogen, sediments, chloride, and bacteria. All of this pollution is carried to waterbodies in stormwater runoff. Thus, it is critical that everyone understand what stormwater is, and how to help clean it and reduce its volume before it enters local waterways.

Stormwater is water from rainfall and melting snow or ice that moves over the land, collecting pollutants as it makes its way to lakes, ponds, streams …

Investigating Biotic Interactions In Deep Time, Danielle Fraser, Laura C. Soul, Anikó B. Tóth, Meghan A. Balk, Jussi T. Eronen, Silvia Pineda-Munoz, Alexandria B. Shupinski, Amelia Villaseñor, W. Andrew Barr, Anna K. Behrensmeyer, Andrew Du, J. Tyler Faith, Nicholas J. Gotelli, Gary R. Graves, Advait M. Jukar, Cindy V. Looy, Joshua H. Miller, Richard Potts, S. Kathleen Lyons

College of Arts and Sciences Faculty Publications

Recent renewed interest in using fossil data to understand how biotic interactions have shaped the evolution of life is challenging the widely held assumption that long-term climate changes are the primary drivers of biodiversity change. New approaches go beyond traditional richness and co-occurrence studies to explicitly model biotic interactions using data on fossil and modern biodiversity. Important developments in three primary areas of research include analysis of (i) macroevolutionary rates, (ii) the impacts of and recovery from extinction events, and (iii) how humans (Homo sapiens) affected interactions among non-human species. We present multiple lines of evidence for an important and …

Body Mass-Related Changes In Mammal Community Assembly Patterns During The Late Quaternary Of North America, Silvia Pineda-Munoz, Advait M. Jukar, Anikó B. Tóth, Danielle Fraser, Andrew Du, W. Andrew Barr, Kathryn L. Amatangelo, Meghan A. Balk, Anna K. Behrensmeyer, Jessica Blois, Matt Davis, Jussi T. Eronen, Nicholas J. Gotelli, Cindy Looy, Joshua H. Miller, Alexandria B. Shupinski, Laura C. Soul, Amelia Villaseñor, Scott Wing, S. Kathleen Lyons

College of Arts and Sciences Faculty Publications

Ecography published by John Wiley & Sons Ltd on behalf of Nordic Society Oikos The late Quaternary of North America was marked by prominent ecological changes, including the end-Pleistocene megafaunal extinction, the spread of human settlements and the rise of agriculture. Here we examine the mechanistic reasons for temporal changes in mammal species association and body size during this time period. Building upon the co-occurrence results from Lyons et al. (2016) – wherein each species pair was classified as spatially aggregated, segregated or random – we examined body mass differences (BMD) between each species pair for each association type and …

A Cross-Cultural, Participatory Approach For Measuring And Cultivating Resilience On Small And Medium Farms, Hans Estrin, Walter Poleman, Aura M. Alonso-Rodríguez, Edgardo Gonzalez, Maria A. Juncos-Gautier, Chistopher Nytch, Ethan Thompson

USDA Agricultural Research Service (ARS) Center

One of the greatest leverage points in fostering the transition to sustainability can be found in the realm of food systems. The COVID-19 pandemic has brought into sharp focus the critical importance of small farm resilience to the well-being of communities around the world. We explored the role of small and medium farms in promoting sustainable social-agricultural systems, and investigated how the resilience of these farms can be both measured and amplified. W e integrated concepts from the fields of food systems sustainability and resilience, agroecology, and positive deviance to identify indicators that can help measure and track farm resilience. …

Amplifying Agroecology In Vermont: Principles And Processes To Foster Food Systems Sustainability, Martha Caswell, Rebecca Maden, Nils Mccune, V. Ernesto Mendez, Gabriela Bucini, Janica Anderzen, Victor Izzo, Stephanie E. Hurley, Rachelle K. Gould, Joshua W. Faulkner, Maria A. Juncos-Gautier

USDA Agricultural Research Service (ARS) Center

Agroecology is grounded in principles that support transitions toward economic, social and ecological sustainability and proposes that real and lasting change will require a significant transformation of our agri-food systems. Evidence for agroecology’s potential continues to grow, both through word of mouth by farmers and social movements, and through recent scientific assessments of its performance. With endorsements from the Food & Agriculture Organization of the United Nations (FAO), national governments in both the global north and south, and social movements, it is developing the web of ‘thick legitimacy’ required for even broader adoption (Montenegro de Wit & Iles, 2016). “...Agroecology …

Modeling Moose Habitat Use And Fitness Consequences Of Habitat Selection In Vermont, Usa, Joshua Alexander Blouin

Graduate College Dissertations and Theses

The moose (Alces alces) population has been declining across the northeastern US largely due to the impacts of winter ticks (Dermacentor albipictus). In epizootic years, an individual moose can host a staggering number of ticks (> 60,000), affecting both survival and reproduction. Habitat management may be used to improve the status of the moose population and health of individuals, but this requires knowledge of key habitat types used by moose and their spatial distribution. We investigated 1) habitat use by moose and 2) the fitness consequences of habitat selection during two critical winter tick life stages in northeastern Vermont. To …

Awareness Of Climate Change’S Impacts And Motivation To Adapt Are Not Enough To Drive Action: A Look Of Puerto Rican Farmers After Hurricane Maria, Luis Alexis Rodríguez-Cruz, Meredith T. Niles

College of Agriculture and Life Sciences Faculty Publications

Understanding how perceptions around motivation, capacity, and climate change’s impacts relate to the adoption of adaptation practices in light of experiences with extreme weather events is important in assessing farmers’ adaptive capacity. However, very little of this work has occurred in islands, which may have different vulnerabilities and capacities for adaptation. Data of surveyed farmers throughout Puerto Rico after Hurricane Maria (n = 405, 87% response rate) were used in a structural equation model to explore the extent to which their adoption of agricultural practices and management strategies was driven by perceptions of motivation, vulnerability, and capacity as a function …

Water Pollution And Environmental Concerns In Anesthesiology, Marc Kostrubiak, Christine Vatovec, Lesley-Ann Dupigny-Giroux, Donna Rizzo, William Paganelli, Mitchell Tsai

Larner College of Medicine Fourth Year Advanced Integration Teaching/Scholarly Projects

Medications administered by anesthesia health care providers and subsequently excreted into the water supply system have the potential to affect ecological systems. Presently, there is a lack of literature examining which medications or metabolites enter the waste stream. Further, assessments of their potential environmental impact are often unknown or simply not considered as an externality of medical practice. Recent work examining the practice of anesthesiology has explored the solid waste stream, and the global warming potential of anesthetic gases, however the potential aquatic impacts remain unexplored. To address the potential for waterborne pollution and environmental toxicity, we extracted the total …

Climate Impacts Associated With Reduced Diet Diversity In Children Across Nineteen Countries, Meredith T. Niles, Benjamin F. Emery, Serge Wiltshire, Molly E. Brown, Brendan Fisher, Taylor H. Ricketts

College of Agriculture and Life Sciences Faculty Publications

It is widely anticipated that climate change will negatively affect both food security and diet diversity. Diet diversity is especially critical for children as it correlates with macro and micronutrient intake important for child development. Despite these anticipated links, little empirical evidence has demonstrated a relationship between diet diversity and climate change, especially across large datasets spanning multiple global regions and with more recent climate data. Here we use survey data from 19 countries and more than 107 000 children, coupled with 30 years of precipitation and temperature data, to explore the relationship of climate to child diet diversity while …

Shaping Soil: Examining Relationships Between Agriculture And Climate Change, Lindsay Barbieri

Graduate College Dissertations and Theses

As the ripple-effects of a changing climate shape our planet, understanding relationships between agriculture and climate change is critical. With agricultural practices shaping soils on over a third of the earth’s land surface, the soils and lands where food is produced are integral grounds for examining these relationships. While not all humans practice agriculture in similar or damaging ways, nevertheless, dominant agricultural practices are displacing beings and ecosystems and perturbing global nutrient cycles across the planet. These entwined imbalances of dominance and nutrients result in flows of excess nitrogen, phosphorus, and carbon that are responsible for nearly three-fourths of the …

Nonlinear Impedance Spectroscopy To Characterize Hole Transport And Recombination Dynamics In Organic Semiconductor Devices, Robin Rice

Graduate College Dissertations and Theses

Impedance Spectroscopy (IS) is an increasingly common technique to characterize both solid state and electrochemical systems including solar cells and light emitting diodes (LEDs). However, IS relies on a system response being linear with its input such that a time invariant impedance can be defined. This is usually achieved by a small amplitude input. However, doing so suppresses responses of the nonlinear processes which are of considerable interest to those designing and optimizing these devices, such as charge carrier recombination and space charge effects. This investigation employs the recently developed nonlinear extension to IS (NLIS) based in Fourier analysis of …

Two-Dimensional Bose–Hubbard Model For Helium On Graphene, Jiangyong Yu

Graduate College Dissertations and Theses

An exciting development in the field of correlated systems is the possibilityof realizing two-dimensional (2D) phases of quantum matter. For a systems of bosons, an example of strong correlations manifesting themselves in a 2D environment is provided by helium adsorbed on graphene. We construct the effective Bose-Hubbard model for this system which involves hard-core bosons (U ≈ ∞) and repulsive nearest-neighbor (V > 0) interactions. In this work, we focus on the calculations of single particle properties of the model such as the hopping parameter t. This is accomplished via Wannier Theory and Band structure calculations, which proves to be reliable …

Multiscale Assessment Of Drinking Water Treatment Residuals As A Phosphorus Sorbing Amendment In Stormwater Bioretention Systems, Michael Rick Ament

Graduate College Dissertations and Theses

Bioretention systems can reduce stormwater runoff volumes and filter pollutants. However, bioretention soil media can have limited capacity to retain phosphorus (P), and can even be a P source, necessitating P-sorbing amendments. Drinking water treatment residuals (DWTRs) have promise as a bioretention media amendment due to their high P sorption capacity. This research explores the potential for DWTRs to mitigate urban P loads using a combination of lab experiments, field trials, and an urban watershed model.

In the laboratory portion of this research, I investigated possible tradeoffs between P retention and hydraulic conductivity in DWTRs to inform bioretention media designs. …

Evaluating The Distributional Equity Of Ecosystem Services Under Land Use And Climate Change Scenarios, Jesse David Gourevitch

Graduate College Dissertations and Theses

Nature supports human well-being and sustainable development through the provision of ecosystem services (ES). While ES have been mapped, modeled, and valued with multiple methods by a wide range of disciplines, understanding the distribution of ES benefits among individuals and groups within society remains a critical gap. Addressing this gap is essential for making conservation and environmental policy-making more equitable. In this dissertation, I present four studies that evaluate the distribution of ES among demographic and socioeconomic groups under a range of land use and climate change scenarios.

In my first chapter, I project changes in the supply, demand, and …

Spillover, Dilution, And Coinfection: Understanding The Spread Of Disease Within Managed And Native Bee Communities., Phillip A. Burnham

Graduate College Dissertations and Theses

Maintaining healthy pollinator communities is vital both for ensuring food securityand ecological diversity. However, managed honeybees and wild bee communities are under threat from an array of stressors including habitat loss, global change, pesticide use, poor beekeeping, and various pests and pathogens. Pathogens have been shown to be spilling over from managed bees into wild bee populations and are known to adversely affect colony function as well as increase mortality. Understanding transmission mechanisms related to general dynamics in this system will not only benefit pollinator health, but also gives us insight into important and understudied topics in disease ecology. In …

Quantifying Proverb Dynamics In Books, News Articles, And Tweets, Ethan Davis

Graduate College Dissertations and Theses

Proverbs are an essential component of language and culture, and though much attention has been paid to their history and currency, there has been comparatively little quantitative work on the frequency with which they are used, and the dynamics of their use over time. With wider availability of large corpora reflecting many diverse genres of documents, it is now possible to take a wider view of the importance of the proverb. Can a corpus linguistic approach to phraseology support existing histories, and what further insight can be gained from a quantitative approach? This study measures temporal changes in the relevance …

Policy And Economic Variables Influencing Adoption Of Sustainable Electrification In Rural Sub-Saharan Africa, Payne William Morgan

Graduate College Dissertations and Theses

Limited access to electricity remains a primary constraint to economic growth and the improvement of livelihoods throughout sub-Saharan Africa. In rural areas, electricity access is especially sparse. The reasons for the scarcity of electricity supply in the region are well documented, with low population density, limited household incomes, and poor regulatory institutions compounding to often make the investment of expanding electricity access result in poor or risky economic returns. However, the declining cost of solar PV and mandates for clean energy development throughout the region have created new channels for bringing electricity supply in potentially more cost-effective ways.Despite these macro …