Physical Sciences and Mathematics Commons^™

The Crustal Thickness Of West Antarctica, Julien A. Chaput, Richard C. Aster, Audrey D. Huerta, X. Sun, Andrew Lloyd, Douglas A. Wiens, Andrew Nyblade, Sridhar Anandakrishnan, J. Paul Winberry, Terry Wilson

Geological Sciences Faculty Scholarship

P-to-S receiver functions (PRFs) from the Polar Earth Observing Network (POLENET) GPS and seismic leg of POLENET spanning West Antarctica and the Transantarctic Mountains deployment of seismographic stations provide new estimates of crustal thickness across West Antarctica, including the West Antarctic Rift System (WARS), Marie Byrd Land (MBL) dome, and the Transantarctic Mountains (TAM) margin. We show that complications arising from ice sheet multiples can be effectively managed and further information concerning low-velocity subglacial sediment thickness may be determined, via top-down utilization of synthetic receiver function models. We combine shallow structure constraints with the response of deeper layers using a …

Glacier Slip And Seismicity Induced By Surface Melt, Peter L. Moore, J. Paul Winberry, Neal R. Iverson, Knut A. Christianson, Sridhar Anandakrishnan, Miriam Jackson, Mark E. Mathison, Denis Cohen

All Faculty Scholarship for the College of the Sciences

Many of the key processes governing fast glacier flow involve interaction between a glacier and its basal hydrological system, which is hidden from direct observation. Passive seismic monitoring has shown promise as a tool for remotely monitoring basal processes, but lack of glacier-bed access prevents clear understanding of the relationships between subglacial processes and corresponding seismic emissions. Here we describe direct measurements of basal hydrology, sliding, and broadband seismicity made in a unique subglacial facility in Norway during the onset of two summer melt seasons. In the most pronounced of these episodes, rapid delivery of surface meltwater to the bed …

Seismic Slip Deficit In The Kashmir Himalaya From Gps Observations, Celia Schiffman, Bikram Singh Bali, Walter Szeliga, Roger Bilham

Faculty Scholarship for the Cascadia Hazards Institute

GPS measurements in Kashmir Himalaya reveal rangenormal convergence of 11±1 mm/yr with dextral shear of 5±1 mm/yr. The transition from a fully locked 170 km wide décollement to the unrestrained descending Indian plate occurs at ~25 km depth over an ~23 km wide transition zone. The convergence rate is consistent with the lower bounds of geological estimates for the Main Frontal Thrust, Riasi, and Balapora fault systems, on which no surface slip has been reported in the past millennium. Of the 14 damaging Kashmir earthquakes since 1123, none may have exceeded M_w = 7.6. Therefore, either a seismic moment …

Rigidity Analysis Of Protein Biological Assemblies And Periodic Crystal Structures, Filip Jagodzinski, Pamela Clark, Jessica Grant, Tiffany Liu, Samantha Monastra, Ileana Streinu

All Faculty Scholarship for the College of the Sciences

Background

We initiate in silico rigidity-theoretical studies of biological assemblies and small crystals for protein structures. The goal is to determine if, and how, the interactions among neighboring cells and subchains affect the flexibility of a molecule in its crystallized state. We use experimental X-ray crystallography data from the Protein Data Bank (PDB). The analysis relies on an effcient graph-based algorithm. Computational experiments were performed using new protein rigidity analysis tools available in the new release of our KINARI-Web server http://kinari.cs.umass.edu.

Results

We provide two types of results: on biological assemblies and on crystals. We found that when only isolated …

A Conservation And Rigidity Based Method For Detecting Critical Protein Residues, Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel

All Faculty Scholarship for the College of the Sciences

Background

Certain amino acids in proteins play a critical role in determining their structural stability and function. Examples include flexible regions such as hinges which allow domain motion, and highly conserved residues on functional interfaces which allow interactions with other proteins. Detecting these regions can aid in the analysis and simulation of protein rigidity and conformational changes, and helps characterizing protein binding and docking. We present an analysis of critical residues in proteins using a combination of two complementary techniques. One method performs in-silico mutations and analyzes the protein's rigidity to infer the role of a point substitution to Glycine …

Asymptotically Unbiased Estimator Of The Informational Energy With Knn, Angel Caţaron, Răzvan Andonie, Chinmei Y. Chueh

All Faculty Scholarship for the College of the Sciences

Motivated by machine learning applications (e.g., classification, function approximation, feature extraction), in previous work, we have introduced a non- parametric estimator of Onicescu’s informational energy. Our method was based on the k-th nearest neighbor distances between the n sample points, where k is a fixed positive integer. In the present contribution, we discuss mathematical properties of this estimator. We show that our estimator is asymptotically unbiased and consistent. We provide further experimental results which illustrate the convergence of the estimator for standard distributions.

Correlation Of Partial Frames In Video Matching, Boris Kovalerchuk, Sergei Kovalerchuk

Computer Science Faculty Scholarship

Correlating and fusing video frames from distributed and moving sensors is important area of video matching. It is especially difficult for frames with objects at long distances that are visible as single pixels where the algorithms cannot exploit the structure of each object. The proposed algorithm correlates partial frames with such small objects using the algebraic structural approach that exploits structural relations between objects including ratios of areas. The algorithm is fully affine invariant, which includes any rotation, shift, and scaling.

Guidance In Feature Extraction To Resolve Uncertainty, Boris Kovalerchuk, Michael Kovalerchuk, Simon Streltsov, Matthew Best

Computer Science Faculty Scholarship

Automated Feature Extraction (AFE) plays a critical role in image understanding. Often the imagery analysts extract features better than AFE algorithms do, because analysts use additional information. The extraction and processing of this information can be more complex than the original AFE task, and that leads to the “complexity trap”. This can happen when the shadow from the buildings guides the extraction of buildings and roads. This work proposes an AFE algorithm to extract roads and trails by using the GMTI/GPS tracking information and older inaccurate maps of roads and trails as AFE guides.

Alluvial Sediment Or Playas: What Is The Dominant Source Of Sand And Silt In Desert Soil Vesicular A Horizons, Southwest Usa, Mark R. Sweeney, Eric V. Mcdonald, Christohper E. Markley

All Faculty Scholarship for the College of the Sciences

Vesicular A (Av) soil horizons form beneath desert pavements from the accretion of aeolian sediment (dust) commonly thought to be derived primarily from desiccating pluvial lakes and playas, with contributions from ephemeral washes and alluvial fans. Particle size distributions of Av horizons are typically bimodal with primary modes of very fine silt and fine sand, suggesting that the horizon matrix is derived from multiple sources. Here we conduct detailed chemical and physical analysis of both Av horizon soil samples and potential sources of aeolian sediment to better constrain the relative contributions of dust associated with the development of Av horizons. …

Evolution Of Dike Opening During The March 2011 Kamoamoa Fissure Eruption, Kīlauea Volcano, Hawai'i, Paul Lundgren, Michael Poland, Asta Miklius, Tim Orr, Sang-Ho Yun, Eric Fielding, Zhen Liu, Scott Hensley, Susan Owen, Akiko Tanaka, Walter Szeliga

Faculty Scholarship for the Cascadia Hazards Institute

The 5–9 March 2011 Kamoamoa fissure eruption along the east rift zone of Kīlauea Volcano, Hawai`i, followed months of pronounced inflation at Kīlauea summit. We examine dike opening during and after the eruption using a comprehensive interferometric synthetic aperture radar (InSAR) data set in combination with continuous GPS data. We solve for distributed dike displacements using a whole Kīlauea model with dilating rift zones and possibly a deep décollement. Modeled surface dike opening increased from nearly 1.5 m to over 2.8 m from the first day to the end of the eruption, in agreement with field observations of surface fracturing. …

Continuous Monitoring Reveals Multiple Controls On Ecosystem Metabolism In A Suburban Stream, Jake J. Beaulieu, Clay P. Arango, David A. Balz, William D. Shuster

Biology Faculty Scholarship

1. Primary production and respiration in streams, collectively referred to as stream ecosystem metabolism, are fundamental processes that determine trophic structure, biomass and nutrient cycling. Few studies have used high‐frequency measurements of gross primary production (GPP) and ecosystem respiration (ER) over extended periods to characterise the factors that control stream ecosystem metabolism at hourly, daily, seasonal and annual scales.

2. We measured ecosystem metabolism at 5‐min intervals for 23 months in Shepherd Creek, a small suburban stream in Cincinnati, Ohio (U.S.A.).

3. Daily GPP was best predicted by a model containing light and its synergistic interaction with water temperature. Water …

2012 Haida Gwaii Quake: Insight Into Cascadia's Subduction Extent, Walter Szeliga

Geological Sciences Faculty Scholarship

The limits of Cascadia were first defined to contain nearly the entire margin of the Pacific Northwest, from Cape Mendocino through the Alaska Panhandle [Schuchert, 1910; Schuchert and Barrell, 1914]. Since that time, the boundary of Cascadia has shrunk to become essentially synonymous with the region where the Juan de Fuca plate subducts beneath the North American plate. As a consequence, seismic hazard assessments in the Pacific Northwest have conventionally focused on the potential for large megathrust earthquakes along the interface of the Juan de Fuca and North American plates.

Nucleation And Seismic Tremor Associated With The Glacial Earthquakes Of Whillans Ice Stream, Antarctica, J. Paul Winberry, Sridhar Anandakrishnan, Douglas A. Wiens, Richard B. Alley

All Faculty Scholarship for the College of the Sciences

The ability to monitor transient motion along faults is critical to improving our ability to understand many natural phenomena such as landslides and earthquakes. Here, we usedata from a GPS and seismometer network that were deployed to monitor the regularly repeating glacial earthquakes of Whillans Ice Stream, West Antarctica to show that a unique pattern of precursory slip precedes complete rupture along the bed of the ice stream. Additionally, we show that rupture can be independently tracked by increased levels of microseismic activity, including harmonic tremor, that are coincident with the onset of slip at any location, thus providing a …

On Mountain Pass Type Algorithms, James Bisgard

All Faculty Scholarship for the College of the Sciences

We consider constructive proofs of the mountain pass lemma, the saddle point theorem and a linking type theorem. In each, an initial “path” is deformed by pushing it downhill using a (pseudo) gradient flow, and, at each step, a high point on the deformed path is selected. Using these high points, a Palais–Smale sequence is constructed, and the classical minimax theorems are recovered. Because the sequence of high points is more accessible from a numerical point of view, we investigate the behavior of this sequence in the final two sections. We show that if the functional satisfies the Palais–Smale condition …

Comparison Of Earthquake Source Models For The 2011 Tohoku Event Using Tsunami Simulations And Near‐Field Observations, Breanyn T. Macinnes, Aditya Riadi Gusman, Randall J. Leveque, Yuichiro Tanioka

All Faculty Scholarship for the College of the Sciences

Selection of the earthquake source used in tsunami models of the 2011 Tohoku event affects the simulated tsunami waveform across the near field. Different earthquake sources, based on inversions of seismic waveforms, tsunami waveforms, and Global Positioning System (GPS) data, give distinguishable patterns of simulated tsunami heights in many locations in Tohoku and at near‐field Deep‐ocean Assessment and Reporting of Tsunamis (DART) buoys. We compared 10 sources proposed by different research groups using the GeoClaw code to simulate the resulting tsunami. Several simulations accurately reproduced observations at simulation sites with high grid resolution. Many earthquake sources produced results within 20% …

Pliocene Sinistral Slip Across The Adobe Hills, Eastern California-Western Nevada: Kinematics Of Fault Slip Transfer Across The Mina Deflection, Sarah Nagorsen-Rinke, Jeffrey Lee, Andrew Calvert

All Faculty Scholarship for the College of the Sciences

The Adobe Hills region (California and Nevada, USA) is a faulted volcanic field located within the western Mina deflection, a right-stepping zone of faults that connects the northern Eastern California shear zone (ECSZ) to the south with the Walker Lane belt (WLB) to the north. New detailed geologic mapping, structural studies, and ⁴⁰Ar/³⁹Ar geochronology in the Adobe Hills allow us to calculate fault slip rates and test predictions for the kinematics of fault slip transfer into the Mina deflection. The Adobe Hills are dominated by Pliocene tuffaceous sandstone, basaltic lavas that yield ⁴⁰Ar/³⁹Ar ages …

College Student Home Computer Security Adoption, Chet L. Claar, Robert C. Shields, David Rawlinson, Robert Lupton

All Faculty Scholarship for the College of the Sciences

The home Internet user faces a hostile environment abundant in potential attacks on their computers. These attacks have been increasing at an alarming rate and cause damage to individuals and organizations regularly, and have the potential to cripple the critical infrastructures of entire countries. Recent research has determined that some individuals are not utilizing additional software protections available to mitigate these potential security risks. This paper seeks to clarify the reasons by proposing a conceptual framework that utilizes the Health Belief Model as a possible way to explain why some people do not perceive a threat sufficient to prompt the …

New Bounds And Computations On Prime-Indexed Primes, Jonathan Bayless, Dominic Klyve, Tomas Oliveira E Silva

Mathematics Faculty Scholarship

In a 2009 article, Barnett and Broughan considered the set of prime-index primes. If the prime numbers are listed in increasing order (2, 3, 5, 7, 11, 13, 17, . . .), then the prime-index primes are those which occur in a prime-numbered position in the list (3, 5, 11, 17, . . .). Barnett and Broughan established a prime-indexed prime number theorem analogous to the standard prime number theorem and gave an asymptotic for the size of the n-th prime-indexed prime.

We give explicit upper and lower bounds for π²(x), the number of prime-indexed primes up to …

Feasibility Of Seismic Monitoring To Identify Avalanche Activity: Snoqualmie Pass, Wa, Kathryn Johnston

All Master's Theses

Avalanches across the Interstate-90 corridor over Snoqualmie Pass, in Washington State, are a concern for winter travelers and backcountry recreation. The temporary closure of the interstate for avalanche mitigation work also affects commerce by delaying transportation of merchandise. The study of seismic signals associated with snow avalanches could allow for greater understanding of avalanche properties, while remote sensing of avalanche activity could help established avalanche control programs and regional avalanche centers with forecasting and mitigation efforts. Two seismic stations were installed near the Alpental ski area on Snoqualmie Pass and recorded seismic activity throughout the winters of 2009-2010 and 2010-2011. …

Lidar Assessment Of Sediment Transport Related To The Removal Of The Marmot Dam, Sandy River, Oregon, Carl Daniel Matzek

All Master's Theses

Four Aerial LiDAR survey were used to examine the impacts of the 2007 removal of the Marmot Dam on the Sandy River, Oregon. Geomorphic Change Detection software was used to answer three project goals: 1) to investigate how the dam removal affected sediment distribution in the lower reach of the river, several km downstream of the dam, 2) to determine whether the pulse of sediment from the dam removal created a detectable, successive downstream accumulation of sediment through time, and 3) to assess the effect of natural high-flow events on the sediment distribution related to the dam removal. The results …

Geomorphology Of Deposits From The 2004 Indian Ocean Tsunami, Tamil Nadu, Southeastern India, Patrick Alan Johnston

All Master's Theses

In low latitudes, geologically suitable repositories for tsunami deposits are not well defined. This project characterizes the geomorphic environments on the southeastern coast of India that preserved depositional evidence of the catastrophic tsunami created by the M_w9.0-9.3 Sumatra-Andaman earthquake on December 26, 2004. The Indian coast is particularly interesting because it is approximately 1300 km from the subduction-zone source of tsunamis across the Indian Ocean, and therefore only the largest events are capable of reaching it. The main objective of this study was to identify the settings where recognizable tsunami deposits from the 2004 event have been preferentially …

Black Carbon Measurements Of Snow And Ice Using The Single Particle Soot Photometer: Method Development And An Ad 1852-1999 Record Of Atmospheric Black Carbon From A Mount Logan Ice Core, James Andrew Menking

All Master's Theses

Black carbon (BC), produced by the combustion of fossil and biofuels, warms the climate by absorbing solar radiation when in the atmosphere and by reducing the albedo of snow and ice when deposited. Measuring BC in snow and ice is important for estimating albedo reduction and developing historical records of BC concentration. Experiments were conducted to further develop a method for measuring BC in snow and ice using the Single Particle Soot Photometer (SP2). Results suggest the optimal procedures for sample storage, treatment, and nebulization, and analysis and calibration of BC concentrations measured using the SP2 coupled to a CETAC …

The Elwha River Restoration: Landscape Change, Salmon, And Sense Of Place, Kelseyanne Johnson

All Master's Theses

Removal of the Elwha River dams to restore the ecosystem and salmon fisheries is the largest project of its kind in the history of the United States. Spanning decades and affecting generations, this project has changed and will continue to change the landscape. This research examined the influence of the anticipated return of salmon on 18 key stakeholders' sense of place of the Elwha River. For almost all stakeholders, changes to the Elwha landscape are welcomed as they expect that salmon will restore the ecosystem to its natural state. Narrative data revealed dominant themes in participants' sense of place expressed …

Rock Glaciers In The Eastern Cascades, Washington, Mark Weidenaar

Undergraduate Honors Theses

The eastern portion of Washington State's Cascade Range is a place not previously examined for rock glaciers, due to proximity to the Pacific Ocean and its associated marine-influenced climate. The objectives of this study were to determine spatial, activity, and genesis patterns, and paleoclimatic implications of Eastern Cascade rock glaciers. Using Google Earth, I found 103 rock glaciers in the study area. Rock glaciers are more common further east of the Cascade crest and more north in latitude, with the largest concentrations occurring east of Lake Chelan (22) and in the Pasayten Wilderness (28) in the North Cascades. None were …

Characterization Of Mass Wasting Through The Spectral Analysis Of Lidar Imagery: Owyhee River, Southeastern Oregon, Christopher Earl Markley

All Master's Theses

Quantifying landslide character is an important aspect of understanding hillslope-channel interactions. Spectral analysis of high-resolution, LiDAR derived, DEMs was carried out following methods described by Booth et al. (2009) to determine the characteristic spectral signature inherent in different styles of landslides in the Owyhee River Canyon in southeastern Oregon. The main factor in landslide generation in this location is a lithologic contact in which a coherent basaltic caprock overlies relatively weak sediments where most of the landslide failure surfaces originated. Changes in spectral power distribution through time were quantified by comparing a sequence of adjacent rotational landslides of apparent different …

Paleoseismologic Evidence For Holocene Activity On The Pinto Mountain Fault, Twentynine Palms, California, Ana Maria Cadena

All Master's Theses

Excavations across the Pinto Mountain fault in Twentynine Palms, California exposed faulted strata across a 32-m wide zone. Trench wall exposures revealed clear evidence for five ground-rupturing events during the Holocene, and two additional events in the late Pleistocene. Optically stimulated luminescence ages from alluvial sediments suggest that the most recent event occurred between 1.7-2.9 ka B.P. and the penultimate event between 2.7-4.2 ka B.P.. Prior to the penultimate event, there were five ground-rupturing earthquakes on the eastern Pinto Mountain fault between 3.5-13.6 ka B.P.. The average recurrence interval since 13.3-13.6 ka B.P. is 1510-1680 years, and 1200-1500 years in …

Evaluating The Utility Of Beaver Reintroduction Programs For Enhancing Habitat For Rainbow Trout And Steelhead, Jonathan Rodger Hegna

All Master's Theses

Beaver reintroduction programs are increasingly being viewed as a way to enhance salmonid habitat and production. However, the actual effectiveness of using beavers as a habitat enhancement tool for ESA listed steelhead Oncorhynchus mykiss populations is unknown. We examined the type of habitat, at both the microhabitat and mesohabitat levels, preferred by steelhead in three small streams in the upper Yakima Basin, WA through standard snorkel surveys and habitat measurements. Our results suggest that steelhead in small streams strongly prefer (relative to availability) microhabitats that have deeper water(> 30 cm), slow stream velocities(< 0 .05 mis), and complex cover types. Habitat partitioning among the size-classes (small< 50 mm, medium 50-90 mm, large> 90 mm total length, TL) principally operated …

The Roles Of Humans And Climatic Variation On The Fire History Of Subalpine Meadows - Mount Rainer National Park (Washington), Michael Louis Lukens

All Master's Theses

With the creation of Mount Rainier National Park (MORA) in 1899 came the active management of the park's landscapes and a heavy emphasis on fire suppression. Today managers at MORA have made returning fire to the park's landscapes a top priority. In order to achieve this goal, and to make more informed decisions in regard to the application of fire, land managers at MORA need to better understand past fire occurrences and the drivers of fire activity on the mountain. To address this problem, analysis of macroscopic charcoal preserved in lake sediments was used to reconstruct the fire history for …

Experiments To Measure The Effects Of Timber Harvesting Equipment On Surface Lithic Scatters, Douglas J. Baughman

All Master's Theses

The importance of cultural resource preservation cannot be overstated; however local economies are at least as important. Due to conservative archaeological site protection practices in Region 5 of the United States Forest Service, the economy of Northeastern California is being adversely affected. In an attempt to help the Forest Service make more informed management decisions and improve the Northeastern California economy, I undertook experiments on the effects of timber harvesting on lithic scatters on Modoc National Forest. The experiments involved placement of 225 glass tiles (proxy lithics) in each of three plots subject to vehicle traffic and log dragging by …