Physical Sciences and Mathematics Commons^™

Detecting Radio Agn Signatures In Red Geysers, Namrata Roy, Kevin Bundy, Wiphu Rujopakarn, Michele Cappellari, Francesco Belfiore, Renbin Yan, Tim Heckman, Matthew Bershady, Jenny Greene, Kyle Westfall, Niv Drory, Kate Rubin, David Law, Kai Zhang, Joseph Gelfand, Dmitry Bizyaev, David Wake, Karen Masters, Daniel Thomas, Cheng Li, Rogemar A. Riffel

Physics and Astronomy Faculty Publications

A new class of quiescent galaxies harboring possible AGN-driven winds has been discovered using spatially resolved optical spectroscopy from the ongoing SDSS-IV MaNGA survey. These galaxies, termed "red geysers," constitute 5%–10% of the local quiescent population and are characterized by narrow bisymmetric patterns in ionized gas emission features. Cheung et al. argued that these galaxies host large-scale AGN-driven winds that may play a role in suppressing star formation at late times. In this work, we test the hypothesis that AGN activity is ultimately responsible for the red geyser phenomenon. We compare the nuclear radio activity of the red geysers to …

Spoil Type Influences Soil Genesis And Forest Development On An Appalachian Surface Coal Mine Ten Years After Placement, Kenton L. Sena, Carmen T. Agouridis, Jarrod Miller, Christopher D. Barton

Lewis Honors College Faculty Publications

Surface mining for coal (or other mineral resources) is a major driver of land-use change around the world and especially in the Appalachian region of the United States. Intentional and well-informed reclamation of surface-mined land is critical for the restoration of healthy ecosystems on these disturbed sites. In Appalachia, the pre-mining land cover is predominately mixed hardwood forest, with rich species diversity. In recent years, Appalachian mine reforestation has become an issue of concern, prompting the development of the Forestry Reclamation Approach, a series of mine reforestation recommendations. One of these recommendations is to use the best available soil substitute; …

Lipg A Bifunctional Phospholipase/Thioesterase Involved In Mycobacterial Envelope Remodeling, Christopher Spilling, Pierre Santucci, Vanessa Point, Isabelle Poncin, Alexandre Guy, Celine Crauste, Carole Serveau-Avesque, Jean Galano, Jean-Francois Cavalier, Stephane Canaan

Chemistry & Biochemistry Faculty Works

Tuberculosis caused by Mycobacterium tuberculosis is currently one of the leading causes of death from an infectious agent. The main difficulties encountered in eradicating this bacteria are mainly related to (i) a very complex lipid composition of the bacillus cell wall, (ii) its ability to hide from the immune system inside the granulomas, and (iii) the increasing number of resistant strains. In this context, we were interested in the Rv0646c (lipGMTB) gene located upstream to the mmaA cluster which is described as being crucial for the production of cell wall components and required for the bacilli adaptation and survival in …

Magmatic Response To Subduction Initiation: Part 1. Fore-Arc Basalts Of The Izu-Bonin Arc From Iodp Expedition 352, John W. Shervais, Mark Reagan, Emily A. Haugen, Renat R. Almeev, Julian A. Pearce, Julie Prytulak, Jeffrey G. Ryan, Scott A. Whattam, Marguerite Godard, Timothy Chapman, Hongyan Li, Walter Kurz, Wendy R. Nelson, Daniel Heaton, Maria Kirchenbaur, Kenji Shimizu, Tetsuya Sakuyama, Yibing Li, Scott K. Vetter

Geosciences Faculty Publications

The Izu-Bonin-Mariana (IBM) fore arc preserves igneous rock assemblages that formed during subduction initiation circa 52 Ma. International Ocean Discovery Program (IODP) Expedition 352 cored four sites in the fore arc near the Ogasawara Plateau in order to document the magmatic response to subduction initiation and the physical, petrologic, and chemical stratigraphy of a nascent subduction zone. Two of these sites (U1440 and U1441) are underlain by fore-arc basalt (FAB). FABs have mid-ocean ridge basalt (MORB)-like compositions, however, FAB are consistently lower in the high-field strength elements (TiO2, P2O5, Zr) and Ni compared to MORB, with Na2O at the low …

Side Chain Modifications To Improve Peptide Structure–Activity Relations, Neelam Lahankar

Seton Hall University Dissertations and Theses (ETDs)

While natural peptides, are ideal starting points for peptide-based drug design and development, they suffer from high conformational instability, which results in susceptibility to proteolytic degradation and poor bioavailability. Peptidomimetics in recent years has helped circumvent these shortcomings by improving the pharmacological properties of polypeptides. Peptidomimetics contain essential elements (pharmacophores) that mimic a natural peptide or protein in 3D space and retain the ability to interact with the biological target producing the same biological effect. In contrast, they offer conformationally restricted structures, potentially minimizing cross-target interactions, which leads to better transport properties through biologic membranes and resistance to immune responses. …

Assessing Ground Penetrating Radar’S Ability To Image Subsurface Characteristics Of Icy Debris Fans In Alaska And New Zealand, Robert W. Jacob, Jeffrey M. Trop, R. Craig Kochel

Faculty Journal Articles

Icy debris fans have recently been described as fan shaped depositional landforms associated with (or formed during) deglaciation, however, the subsurface characteristics remain essentially undocumented. We used ground penetrating radar (GPR) to non-invasively investigate the subsurface characteristics of icy debris fans (IDFs) at McCarthy Glacier, Alaska, USA and at La Perouse Glacier, South Island of New Zealand. IDFs are largely unexplored paraglacial landforms in deglaciating alpine regions at the mouths of bedrock catchments between valley glaciers and icecaps. IDFs receive deposits of mainly ice and minor lithic material through different mass-flow processes, chiefly ice avalanche and to a lesser extent …

2018 Fall Engr333 Project Final Report (Section B), Alexander Cooper, Katie Diekema, Grace Fasipe, Daniella Sugijanto, Alec Dejonge, Timothy Dykhuis, Breanna Kooiman, Samuel Olson, Brennan Boice, Tyler Gustman, Daniel Norton, Christopher Vanwhye, Robert Capozzoli, Jared Minderhoud, Clark Richeson, Nathan Schuyten

ENGR 333

What is the largest possible reduction in Calvin College’s annual energy costs from a $5M initial investment in renewable energy? Renewable energy systems are essential for Calvin College to reduce greenhouse gas emissions and achieve carbon neutrality to meet the Carbon Commitment that President Le Roy signed in December 2017. Also, a significant cost reduction could be a positive result of transitioning to renewable energy sources such as geothermal, wind, solar, and biomass. Four renewable energy sources were studied throughout the semester to determine a feasible renewable energy plan for Calvin with a $5M investment.

2018 Fall Engr333 Project Final Report (Section A), 2018 Fall Engr333 Section A

ENGR 333

Calvin College currently spends 2.35 million dollars on energy every year. Physical Plant is under pressure to reduce the amount of energy that Calvin purchases from the electrical grid since the college is facing many budget constraints. In addition, President Le Roy signed the President’s Carbon Commitment to achieve carbon neutrality by 2057. With this need to save money on energy and reduce the college’s carbon footprint, the objective of this project was to determine the largest possible reduction in Calvin’s annual energy costs given a five-million-dollar investment in renewable energy.

Deep Visual Recommendation System, Raksha Sunil

Master's Projects

Recommendation system is a filtering system that predicts ratings or preferences that a user might have. Recommendation system is an evolved form of our trivial information retrieval systems. In this paper, we present a technique to solve new item cold start problem. New item cold start problem occurs when a new item is added to a shopping website like Amazon.com. There is no metadata for this item, no ratings and no reviews because it’s a new item in the system. Absence of data results in no recommendation or bad recommendations. Our approach to solve new item cold start problem requires …

Virtual Robot Climbing Using Reinforcement Learning, Ujjawal Garg

Master's Projects

Reinforcement Learning (RL) is a field of Artificial Intelligence that has gained a lot of attention in recent years. In this project, RL research was used to design and train an agent to climb and navigate through an environment with slopes. We compared and evaluated the performance of two state-of-the-art reinforcement learning algorithms for locomotion related tasks, Deep Deterministic Policy Gradients (DDPG) and Trust Region Policy Optimisation (TRPO). We observed that, on an average, training with TRPO was three times faster than DDPG, and also much more stable for the locomotion control tasks that we experimented. We conducted experiments and …

Theoretical Studies Of Ultrafast Electron Dynamics In Atoms And Molecules Via High-Order Harmonic Generation, Paul Abanador

Paul Abanador

Lipg A Bifunctional Phospholipase/Thioesterase Involved In Mycobacterial Envelope Remodeling, Christopher Spilling, Pierre Santucci, Vanessa Point, Isabelle Poncin, Alexandre Guy, Celine Crauste, Carole Serveau-Avesque, Jean M. Galano, Jean-Francois Cavalier, Stephane Canaan

Christopher Spilling

Mass-Analyzed Threshold Ionization Of Lanthanide Imide Lnnh (Ln = La And Ce) Radicals From N–H Bond Activation Of Ammonia, Yuchen Zhang, Silver Nyambo, Dong-Sheng Yang

Chemistry Faculty Publications

Ln (Ln = La and Ce) atom reactions with ammonia are carried out in a pulsed laser vaporization supersonic molecular beam source. Lanthanide-containing species are observed with time-of-flight mass spectrometry, and LnNH molecules are characterized by mass-analyzed threshold ionization (MATI) spectroscopy and quantum chemical calculations. The theoretical calculations include density functional theory for both Ln species and a scalar relativity correction, electron correlation, and spin-orbit coupling for the Ce species. The MATI spectrum of LaNH exhibits a single vibronic band system with a strong origin band and two weak vibronic progressions, whereas the spectrum of CeNH displays two band systems …

Pasnet: Pathway-Associated Sparse Deepneural Network For Prognosis Prediction From High-Throughput Data, Jie Hao, Youngsoon Kim, Tae-Kyung Kim, Mingon Kang

Faculty Articles

Background: Predicting prognosis in patients from large-scale genomic data is a fundamentally challenging problem in genomic medicine. However, the prognosis still remains poor in many diseases. The poor prognosis maybe caused by high complexity of biological systems, where multiple biological components and their hierarchical relationships are involved. Moreover, it is challenging to develop robust computational solutions with high-dimension, low-sample size data. Results: In this study, we propose a Pathway-Associated Sparse Deep Neural Network (PASNet) that not only predicts patients’ prognoses but also describes complex biological processes regarding biological pathways for prognosis. PASNet models a multilayered, hierarchical biological system of genes …

Positive Association Between Dietary Inflammatory Index And The Risk Of Osteoporosis: Results From The Koges_Health Examinee (Hexa) Cohort Study, Hye Sun Kim, Cheongmin Sohn, Minji Kwon, Woori Na, Nitin Shivappa, James R. Hébert, Mi Kyung Kim

Faculty Publications

Previous studies have found that diet’s inflammatory potential is related to various diseases. However, little is known about its relationship with osteoporosis. The aim of this study was to investigate the association between the dietary inflammatory index (DII®) and osteoporosis risk in a large-scale prospective cohort study in Korea. This prospective cohort study included 159,846 participants (men 57,740; women 102,106) from South Korea with a mean follow-up of 7.9 years. The DII was calculated through a validated semi-quantitative FFQ (SQFFQ), and information on osteoporosis was self-reported by the participants. Analyses were performed by using a multivariable Cox proportional hazard model. …

Boundary Twists, Instabilities, And Creation Of Skyrmions And Antiskyrmions, Aldo Raeliarijaona, Rabindra Nepal, Alexey Kovalev

Department of Physics and Astronomy: Faculty Publications

We formulate and study the general boundary conditions dictating the magnetization profile in the vicinity of an interface between magnets with dissimilar properties. Boundary twists in the vicinity of an edge due to Dzyaloshinskii-Moriya interactions have been first discussed by Wilson et al. [Phys. Rev. B 88, 214420 (2013)] and by Rohart and Thiaville [Phys. Rev. B 88, 184422 (2013)]. We show that in general case the boundary conditions lead to the magnetization profile corresponding to the Néel, Bloch, or intermediate twist. We explore how such twists can be utilized for creation of skyrmions and antiskyrmions, e.g., in a view …

Self-Stabilizing Token Distribution With Constant-Space For Trees, Yuichi Sudo, Ajoy K. Datta, Lawrence L. Larmore, Toshimitsu Masuzawa

Computer Science Faculty Research

Self-stabilizing and silent distributed algorithms for token distribution in rooted tree networks are given. Initially, each process of a graph holds at most l tokens. Our goal is to distribute the tokens in the whole network so that every process holds exactly k tokens. In the initial configuration, the total number of tokens in the network may not be equal to nk where n is the number of processes in the network. The root process is given the ability to create a new token or remove a token from the network. We aim to minimize the convergence time, the number …

Loosely-Stabilizing Leader Election With Polylogarithmic Convergence Time, Yuichi Sudo, Fukuhito Ooshita, Hirotsugu Kukugawa, Toshimitsu Masuzawa, Ajoy K. Datta, Lawrence L. Larmore

Computer Science Faculty Research

A loosely-stabilizing leader election protocol with polylogarithmic convergence time in the population protocol model is presented in this paper. In the population protocol model, which is a common abstract model of mobile sensor networks, it is known to be impossible to design a self-stabilizing leader election protocol. Thus, in our prior work, we introduced the concept of loose-stabilization, which is weaker than self-stabilization but has similar advantage as self-stabilization in practice. Following this work, several loosely-stabilizing leader election protocols are presented. The loosely-stabilizing leader election guarantees that, starting from an arbitrary configuration, the system reaches a safe configuration with a …

Pantry: A Macro Library For Python, Derek Pang

Master's Projects

Python lacks a simple way to create custom syntax and constructs that goes outside of its own syntax rules. A paradigm that allows for these possibilities to exist within languages is macros. Macros allow for a shorter set of syntax to expand into a longer set of instructions at compile-time. This gives the capability to evolve the language to fit personal needs.

Pantry, implements a hygienic text-substitution macro system for Python. Pantry achieves this through the introduction of an additional preparsing step that utilizes parsing and lexing of the source code. Pantry proposes a way to simply declare a pattern …

Electrical Characterization Of Crystalline Uo2, Tho2 And U0.71Th0.29O2, Christina L. Dugan

Theses and Dissertations

Uranium dioxide (UO₂), thorium dioxide (ThO₂), and U_xTh_1-xO₂ alloys are characterized for suitability in uranium-based neutron detectors. ThO₂ was studied for an envisioned UO₂/ThO₂ heterojunction. A U_0.71Th_0.29O₂ alloy was studied because of its resistance to oxidation and potential use in surface passivation. The U_0.71Th_0.29O₂ effective Debye temperature of 217± 24 K was measured using temperature-dependent x-ray photoemission spectroscopy (XPS). The specific heat capacity for the U_0.71Th_0.29O₂ alloy was calculated from the Debye …

Advancements In Fractal Plasmonics: Structures, Optical Properties, And Applications., Gregory Q Wallace, Francois Lagugne-Labarthet

Chemistry Publications

The structural characteristics of plasmonic nanostructures directly influence their plasmonic properties, and therefore, their potential role in applications ranging from sensing and catalysis to light- and energy-harvesting. For a structure to be compatible with a selected application, it is critical to accurately tune the plasmonic properties over a specific spectral range. Fabricating structures that meet these stringent requirements remains a significant challenge as plasmon resonances are generally narrow with respect to the considered selected spectral range. Adapted from their well-established role in GHz applications, plasmonic fractal structures have emerged as architectures of interest due to their ability to support multiple …

Long-Term Variation Of Summer Phytoplankton Communities In An Urban Lake In Relation To Lake Management And Climate Conditions, Yuan Xiao Grund

Dissertations and Theses

Eutrophication is one of the primary factors causing harmful cyanobacteria blooms in freshwater lakes; climate change such as warmer temperature can potentially further increase both frequency and intensity of blooms. This study investigated the long-term changes in water quality and summer phytoplankton assemblages in Oswego Lake, OR, in relation to lake management practices (e.g., hypolimnetic aeration and alum treatments), as well as climatic and regional meteorological conditions. Both water quality and phytoplankton assemblages were sampled biweekly during summer seasons between 2001 and 2013. The concentrations of total phosphorus (TP), soluble reactive phosphorus (SRP) and total nitrogen (TN) decreased 66%, 93% …

Sampling Bias Overestimates Climate Change Impacts On Forest Growth In The Southwestern United States, Stefan Klesse, R. Justin Derose, Christopher H. Guiterman, Ann M. Lynch, Christopher D. O’Connor, John D. Shaw, Margaret E.K. Evans

Wildland Resources Faculty Publications

Climate−tree growth relationships recorded in annual growth rings have recently been the basis for projecting climate change impacts on forests. However, most trees and sample sites represented in the International Tree-Ring Data Bank (ITRDB) were chosen to maximize climate signal and are characterized by marginal growing conditions not representative of the larger forest ecosystem. We evaluate the magnitude of this potential bias using a spatially unbiased tree-ring network collected by the USFS Forest Inventory and Analysis (FIA) program. We show that U.S. Southwest ITRDB samples overestimate regional forest climate sensitivity by 41–59%, because ITRDB trees were sampled at warmer and …

Monitoring The Impact Of Groundwater Pumping On Infrastructure Using Geographic Information System (Gis) And Persistent Scatterer Interferometry (Psi), Kirsten Deprekel, El Hachemi Bouali, Thomas Oommen

Department of Geological and Mining Engineering and Sciences Publications

Transportation infrastructure is critical for the advancement of society. Bridges are vital for an efficient transportation network. Bridges across the world undergo variable deformation/displacement due to the Earth’s dynamic processes. This displacement is caused by ground motion, which occurs from many natural and anthropogenic events. Events causing deformation include temperature fluctuation, subsidence, landslides, earthquakes, water/sea level variation, subsurface resource extraction, etc. Continual deformation may cause bridge failure, putting civilians at risk, if not managed properly. Monitoring bridge displacement, large and small, provides evidence of the state and health of the bridge. Traditionally, bridge monitoring has been executed through on-site surveys. …

Coordinated Unmanned Aircraft System (Uas) And Ground-Based Weather Measurements To Predict Lagrangian Coherent Structures (Lcss), Peter J. Nolan, James Pinto, Javier González-Rocha, Anders Jensen, Christina N. Vezzi, Sean C. C. Bailey, Gijs De Boer, Constantin Diehl, Roger Laurence Iii, Craig W. Powers, Hosein Foroutan, Shane D. Ross, David G. Schmale Iii

Mechanical Engineering Faculty Publications

Concentrations of airborne chemical and biological agents from a hazardous release are not spread uniformly. Instead, there are regions of higher concentration, in part due to local atmospheric flow conditions which can attract agents. We equipped a ground station and two rotary-wing unmanned aircraft systems (UASs) with ultrasonic anemometers. Flights reported here were conducted 10 to 15 m above ground level (AGL) at the Leach Airfield in the San Luis Valley, Colorado as part of the Lower Atmospheric Process Studies at Elevation—a Remotely-Piloted Aircraft Team Experiment (LAPSE-RATE) campaign in 2018. The ultrasonic anemometers were used to collect simultaneous measurements of …

Detection, Containment And Scaling Relations Of Near Source Explosionsin Granite Through Moment Tensor Representations, Mason Macphail

Earth Sciences Theses and Dissertations

The Source Phenomenology Experiment (SPE) was a series of nine, single-fired chemical explosions within the Morenci Copper mine in Arizona. Its purpose was to design, detonate, record and analyze seismic waveforms from these single-fired, partially and fully contained explosions. Ground motion data from the SPE are analyzed in this study to assess the uniqueness of the source representation of these explosions and its ability to resolve yield and depth when containment and geology or physical parameters of the source region may have a range of possible values. The P-wave velocities (V_p) at the test site are well constrained …

Riverbank Filtration Impacts On Post Disinfection Water Quality In Small Systems—A Case Study From Auburn And Nebraska City, Nebraska, Matteo D'Alessio, Bruce Dvorak, Chittaranjan Ray

Daugherty Water for Food Global Institute: Faculty Publications

Small water systems can experience a fluctuating quality of water in the distribution system after disinfection. As chlorine is the most common disinfectant for small systems, the occurrence of disinfection byproducts (DBPs) represents a common problem for these systems. Riverbank filtration (RBF) can be a valuable solution for small communities located on riverbanks. The objectives of this study were to evaluate (i) the improvements in water quality at two selected RBF systems, and (ii) the potential lower concentrations of DBPs, in particular, trihalomethanes (THMs), in small systems that use RBF. Two small communities in Nebraska, Auburn and Nebraska City, using …

A Snowball's Chance: Debt Snowball Vs. Debt Avalanche, Evan Mcallister

Senior Honors Projects, 2010-2019

Traditional mathematical analysis states that the most efficient way to pay off interest-bearing consumer debt is to pay the individual debts in order from largest to smallest interest rate. In doing this, the debtor will eliminate the largest sources of interest first, thus shortening the overall time-to-pay. This method is known as the “Debt Avalanche.” The “Debt Snowball” method, popularized in large part by investor-author David Ramsey, recommends that consumers pay debts in order from smallest to largest, regardless of interest rate. In this paper, I conduct an empirical analysis of the Federal Reserve’s Survey of Consumer Finance (SCF), calculating …

Geochemical And Petrologic Evolution Of Otlakbaşı Basaltic Volcanism To The East Of Lake Van, Vural Oyan

Bulletin of the Mineral Research and Exploration

Collision-related Otlakbaşı volcanism to the east of Lake Van occurred by eruptions from extensional fissures. In this study, it is investigated new Ar-Ar age data and major, trace and rare earth elements characteristics of the Otlakbaşı basaltic volcanism. The Ar-Ar age data indicate that this basaltic volcanism erupted in Early Pliocene time in contrast to its previously known as Quaternary age. The volcanic products are basaltic composition and close to alkaline-subalkaline division line. Results of fractional crystallization accompanied by assimilation (AFC) modeling imply that fractional crystallization can be negligible compared to crustal contamination in the evolution processes of the magma …

Petrography And Petrology Of The Yürekli (Balıkesir) Volcanics: An Example Of Post-Collisional Felsic Volcanism In The Biga Peninsula (Nw Turkey), Ece Simay Saatci, Zafer Aslan

Bulletin of the Mineral Research and Exploration

In this study, the aim was to determine the petrography, geochemistry and source of the Yürekli volcanics (Biga Peninsula, NW Turkey). Tertiary volcanism is widespread in Western Anatolia (NW Turkey), which is an important area where tectonic and magmatic events are observed together. Yürekli volcanic rocks comprise dacitic lavas and pyroclastics. Dacitic lavas show porphyric and hyaloporphyric texture, and consist of plagioclase, quartz, amphibole, biotite, sanidine and Fe-Ti oxide minerals with apatite and zircon accessory minerals. Petrologically, they have high-potassic and calc-alkaline characteristics. Yürekli volcanics show enrichment in large ion lithophile elements (LILE) and are depleted in high field strength …