Physical Sciences and Mathematics Commons^™

Exploring The Reactivity Of Metal-Ligand Cooperative Complexes With Dioxazolones, Terminal Alkynes, And 2-Ethynylbenzyl Alcohol, Megan A. Hoffer Miss

Electronic Thesis and Dissertation Repository

N-Acyl ketenimines were attempted to be synthesized catalytically by [Ru(Cp)(P^Ph₂N^Ph₂)(NCMe)]PF₆ with phenylacetylene and 3-phenethynyl-1,2,4-dioxazol-5-one. Trapping agents were employed to identify the major product of the reaction, as many products were formed. [Ru(Cp)(P^Ph₂N^Ph₂)(NCMe)]PF₆ reacts with 3-phenethynyl-1,2,4-dioxazol-5-one generating an isocyanate via the Curtius rearrangement, confirmed by a forced Curtius rearrangement with 3-phenethynyl-1,2,4-dioxazol-5-one and 1,2,4-triazole. Rates of vinylidene formation using [Ru(Cp)(P^Ph₂N^Ph₂)(NCMe)]PF₆ and various terminal alkynes of different sterics and electronics were evaluated using a Hammett analysis for and simple rate comparisons. …

Hydrogen Bond Activation Of Donor Acceptor Cyclopropanes, Matthew H.J. Pamenter

Electronic Thesis and Dissertation Repository

Donor acceptor cyclopropanes (DACs) are versatile organic building blocks used in the synthesis of many pharmaceutically relevant heterocycles. The combination of a high ring strain cyclopropane core and vicinal donor and acceptor substituents cause DACs to behave like 1,3-zwitterions. Recently, DACs have been activated by a hydrogen bond donor solvent in place of a Lewis acid catalyst, allowing the elimination of heavy metals commonly used in these transformations. Hexafluoroisopropanol (HFIP) as a hydrogen bond donor cosolvent was found to cause a downfield shift of the DACs electrophilic carbon in the 13C NMR spectrum. This indicates increased electrophilicity at this position …

The Synthesis And Characterization Studies Of Modified Nucleobase In Pna And Dna, Gyeongsu Park

Electronic Thesis and Dissertation Repository

Nucleic acids have been extensively studied not only for their importance in biological systems as the medium of genetic information but also for their potential uses in therapeutic, diagnostic and other biological applications. As such, modified oligonucleotides and oligonucleotide analogues have drawn the attention of researchers from various disciplines. Modification of oligonucleotides can enhance their desired characteristics and engender unique properties, such as fluorescence, giving rise to a variety of applications. Peptide nucleic acid (PNA) is an oligonucleotide mimic with a pseudo-peptide backbone based on N-(2-aminoethyl)glycine that is renowned for high target binding affinity and resistance to enzyme degradation. …

Oligo [Poly(Ethylene Glycol) Fumarate] Gels With Photo-Sensitive Pendent Groups, Andrew Chung

Electronic Thesis and Dissertation Repository

Stimuli-responsive hydrogels are 3D polymeric structures that offer attractive qualities within the biomedical field due to their excellent biocompatibility and tunability to be employed in drug release, wound healing, and implants. Aliphatic polyesters are biodegradable polymers that naturally degrade by the process of simple ester hydrolysis. Oligo[poly(ethylene glycol) fumarate] (OPF) is a linear polyester containing repeating units of poly(ethylene glycol) and unsaturated fumarate. OPF naturally degrades through hydrolytic cleavage into poly(ethylene glycol) (PEG) and fumaric acid which is a naturally occurring compound found in the Kreb’s cycle. However, in some cases, it would be beneficial to activate or accelerate this …

Synthesis And Surface Modification Of Azide Decorated Silver Nanoclusters, Alexander H. Stöckli

Electronic Thesis and Dissertation Repository

In nanocluster research, easy modification of the cluster surface while maintaining the cluster core remains a key challenge. Herein we report the synthesis, structure, and properties of four targeted Ag₂₀ nanoclusters (NCs) with surface azide moieties, two of which have 8 azide moieties, [CO₃@Ag₂₀(S^tBu)₁₀(m-N₃-C₆H₄COO)₈(DMF)₄] and [CO₃@Ag₂₀(S^tBu)₁₀(p-N₃-C₆H₄COO)₈(DMF)₄], and two of which have 6 azide moieties, [CO₃@Ag₂₀(S …

Expanding The Scope Of Clickable Azide-Functionalized Nanoclusters To Include Au144, Johanna A. De Jong

Electronic Thesis and Dissertation Repository

Thiolate-protected Au₁₄₄ nanoclusters (NCs) are an intriguing member of the gold NC family. Their geometric structure, distinct electrochemical features, and susceptibility to structural rearrangement under the duress of ligand exchange have been studied. However, there are currently no established protocols for surface modification or tuning of their ligand shells post synthesis. Here, the direct synthesis of three regioisomers of azide-modified Au₁₄₄ NCs with 60 azide moieties, i.e., Au₁₄₄(SC₂H₄C₆H₄-N₃)₆₀, is reported, in which the azide functionality is located at the ortho-, meta-, or …

3,4-Annulated Indoles Via Tandem Cyclopropane Ring-Opening/Conia-Ene And Michael Addition/Conia-Ene Reactions, Shane R. Cochrane

Electronic Thesis and Dissertation Repository

The indole moiety is ubiquitous in natural products, and as such their reactions and syntheses are a high priority for organic chemists. The use of tandem reactions is an excellent strategy to optimize the efficiency of chemical processes. This thesis details the process of designing and implementing of strategies for the syntheses of 3,4-annulated indoles from 4-ethynylindoles via tandem cyclopropane ring-opening/Conia-ene and Michael addition/Conia-ene reactions. It was discovered through optimization experiments that the reactions are highest yielding using superstoichiometric amounts of Lewis acidic zinc halides. The cyclopropane variant of the reaction was applied to successfully synthesize 23 new 3,4-cycloheptannoindoles products. …

Metal Ligand Cooperative Complexes For Acceptorless Dehydrogenation Of Amines, Matthew D. Hoffman

Electronic Thesis and Dissertation Repository

Complexes of the type [M(Cp/Cp*)(MeCN)(P^R₂N^R′₂)]PF₆ (M = Fe, Ru) were synthesized and/or tested towards acceptorless dehydrogenation (AD) of amines. The primary amine benzylamine can undergo AD to form a mixture of products, and a selection of catalysts were employed in an attempt to control product selectivity. As a result, trends in product distribution were observed by modifying the primary and secondary coordination spheres on the catalyst. A new complex, [Fe(Cp)(MeCN)(P^Ph₂N^Ph₂)]PF₆ (3a) was synthesized and characterized and was found to be a completely selective dehydrogenation …

Functional Nanoparticles: Tin Monoxide And Molybdenum Disulfide Quantum Dots On Graphene Nanosheets, Denys Vidish

Electronic Thesis and Dissertation Repository

Light harvesting can be referred to the use of an ensemble of different nanoparticles, or quantum dots, or other absorbers to optimize the ability to capture a given spectrum of electromagnetic radiation (for example the solar spectrum under specific atmospheric conditions) in a light-absorbing system. To this end, different nanoparticles play complementary functions within the system and absorb or scatter light at different wavelength intervals. Light harvesting finds applications in fields as diverse as solar cells, photosynthesis and photocatalysis. Graphene supporting a set of different semiconducting nanoparticles has often been proposed as light harvesters. To further this concept, my thesis …

Synthesis And Characterization Of Re(I) Tricarbonyl Complexes Of 1,8-Naphthalimide, Priyanka Jagadeesa Prabhu

Electronic Thesis and Dissertation Repository

1,8-Naphthalimide fluorophores with amino-substituents absorb and emit in the visible region. The photophysical properties of this class of fluorophores can be modulated by altering the degree of Intramolecular Charge Transfer (ICT) in the excited state. Thus, several metal complexes with the 1,8-naphthalimide motif have been developed as cell imaging agents. In this project, four 1,8-naphthalimide ligands were synthesized by incorporating rigid linkers. Among these, three ligands also allowed the extension of π-conjugation to the naphthalimide moiety. In addition, a ligand was also synthesized without the use of a linker. Re(I) tricarbonyl complexes of these ligands were also synthesized and their …

Nanoorthogonal Surface Modifications Of Gold Nanoparticles And Nanoclusters Through Strain-Promoted Cycloaddition Chemistry, Praveen N. Gunawardene

Electronic Thesis and Dissertation Repository

This thesis explores the preparation of thiolated gold nanoparticles (AuNPs) and thiolated gold nanoclusters (AuNCs) capable of undergoing post-assembly surface modifications using two common “bioorthogonal” click reactions: the strain-promoted alkyne-azide cycloaddition (SPAAC) reaction (which occurs between a strained-alkyne and an azide) and the strain-promoted alkyne-nitrone cycloaddition (SPANC) reaction (which occurs between a strained-alkyne and a nitrone). Due to their rapid and modifiable reaction kinetics, high chemoselectivity, and stability of the reactive partners, these reactions were originally designed to tether functional substrates to biologically sensitive biomolecules, without altering their structure or perturb the biologically sensitive environments in which they …

The Development Of Fluorine-18 Imaging Agents Targeting The Ghsr, Marina D. Childs

Electronic Thesis and Dissertation Repository

Molecular imaging is an interdisciplinary field of study that allows for real-time visualization of biological processes in both healthy and disease states. Fluorine-18 positron emission tomography (PET) imaging is a highly sensitive technique where molecular probes containing fluorine-18 serve to specifically locate and visualize the expression of relevant disease biomarkers. The growth hormone secretagogue receptor 1a (GHSR) is differentially expressed in cancer and cardiac pathology, making it a biomarker of interest for imaging such diseases. This thesis discusses the development and optimization of GHSR-targeting ¹⁸F-PET imaging probes as well as proposes a new imaging agent discovery technique.

Chapter 2 …

Hemithioindigo-Based Photoswitchable Self- Complementary Hydrogen Bond Arrays, Suendues Noori

Electronic Thesis and Dissertation Repository

Hydrogen bonded materials are slowly conquering grounds in the literature because of their dynamic features which stem from their reversible interactions. Incorporating the ability for light to chemically modify these interactions provides a unique template for innovative, efficient and self-healing materials. This thesis explores the design, synthesis, and characterization of nine derivatives of a well-known organic compound – hemithioindigo – with dual function; as a photoswitch and a novel self-complementary hydrogen bond array. The supramolecular complexes formed moderate to strong associations (63 M^-1 to 1100 M^-1) with spontaneous Gibbs free energy values (-10.3 kJ/mol to -17.3 kJ/mol) …

One-Pot Synthesis Of Bicyclic Piperidines From Donor Acceptor Cyclopropanes, David G. Stephens

Electronic Thesis and Dissertation Repository

The efficient synthesis of heterocyclic compounds is of great importance to organic chemistry. One method for achieving efficiency is through the use and development of one-pot reactions. This thesis describes the planning and development of an extension to the tandem cyclopropane opening Conia-ene reactivity previously reported. A search for a substrate capable of undergoing the reaction was undertaken and the reaction was optimized. The highest yielding conditions tested used catalytic Sc(OTf)₃ and superstoichiometric ZnBr₂, but other catalyst systems also worked. The optimized reaction conditions tolerated 6-membered rings well in addition to 7-membered rings in some rotationally restricted …

Development Of Multi-Functional Molecular Systems For Applications On Nanomaterial Surfaces, Jun Hyeong Park

Electronic Thesis and Dissertation Repository

The glutathione-mediated, retro Michael-type addition reaction is demonstrated to take place at the interface of water-soluble, maleimide-functionalized gold nanoparticles (Maleimide-AuNP). The retro Michael-type addition can be blocked by hydrolyzing the Michael addition thioether adduct at the nanoparticle’s interface. This procedure “locks” the molecule of interest onto the Maleimide-AuNP template, ensuring no loss of the molecular cargo from the nanocarrier. On the other hand, the glutathione-mediated retro Michael-type addition reaction can be exploited for delivering a molecular payload. The Michael donor, 4-mercaptophenylacetic acid was modified with a terminal azide, allowing for addition of cargo through strain-promoted alkyne azide cycloadditions with various …

The Rearrangement And Nucleophilic Addition Of Donor-Acceptor Cyclobutane: Novel Methodologies To Access Δ-Lactones And Ring-Opened Products, Donghyun Koo

Electronic Thesis and Dissertation Repository

Donor-acceptor (D-A) cyclobutanes are a well recognized building block in synthetic organic chemistry thanks to their unique reactivity. A variety of synthetic methodologies such as cycloaddition, rearrangement, and ring-opening addition of D-A cyclobutanes have been reported. Among them, the rearrangement reactions of D-A cyclobutanes have attracted less interest compared with other methodologies as they too often require extreme reaction conditions. To further explore the rearrangement reactions of D-A cyclobutanes, in this work a ring expansion rearrangement reaction of D-A cyclobutanes analogous to the Cloke–Wilson reaction of cyclopropanes was examined. By exploiting the solvent effect in a Brønsted acid system, we …

Synthesis Of Functionalized Tetrahydropyridine Derivatives Via Sncl4-Promoted [4+2] Cycloaddition Of Donor-Acceptor Cyclobutanes And Nitriles, David Tong

Electronic Thesis and Dissertation Repository

The formation of carbon-heteroatom bonds is pivotal in obtaining structural frameworks present in a variety of important natural products and bioactive molecules. In that regard, Lewis-acid promoted cycloadditions of strained carbocycles have proven to be powerful tools for the construction of heterocyclic frameworks. The Pagenkopf group was the first to discover the cycloaddition of donor-acceptor (DA) cyclopropanes with nitriles. Since the strain energy of cyclobutane is comparable to that of cyclopropane, our group has sought to extend to the comparatively unexplored homologous cyclobutane scaffold. Disclosed here is the first [4+2] cycloaddition of nitriles with DA cyclobutanes via Lewis-acid activation. This …

The Synthesis Of Heterocycles And Carbocycles And Work Towards Kainic Acid, Mathew L. Piotrowski

Electronic Thesis and Dissertation Repository

This thesis focuses on the synthesis of a variety of heterocycles and carbocycles such as pyrrolidines, dihydrofurans, dihydropyrroles, cyclopentenes, and 2,5-dihydrooxepines. Traditional synthetic methods are discussed first, followed by the manipulation of donor-acceptor cyclopropanes towards the above-mentioned compounds. This leads to a discussion about an important pyrrolidine-containing natural product known as kainic acid. Kainic acid has been studied in the neuroscience field for its biological properties which have led to a better understanding of common human neurological disorders like epilepsy, Huntington’s disease and the after-effects of strokes.

Chapter two focuses on a common rearrangement of donor-acceptor cyclopropanes known as the …

Functionalization Of Indoles And Donor-Acceptor Cyclopropanes And Their Application Towards The Total Synthesis Of Tronocarpine And Dippinine B, Lauren C. Irwin

Electronic Thesis and Dissertation Repository

The work disclosed in this dissertation outlines novel reactions involving indoles and their applications towards the total synthesis of natural products, tronocarpine and dippinine B.

Showcased in Chapter 2 is a novel mode of activation for donor-acceptor cyclopropanes via an external hydrogen bond. The hydrogen bond increases the cyclopropane’s electrophilicity permitting indole nucleophiles to open the ring. The result is 3-postion functionalized indoles.

An external hydrogen-bond donor, HFIP (1,1,1,3,3,3-hexafluoroisopropanol), is used as a solvent to provide the medium necessary for favourable hydrogen-bond interaction with donor-acceptor cyclopropanes. Hydrogen bond activation of donor-acceptor cyclopropanes was successful in generating a multitude of functional …

Methodologies For Metal Functionalization Of Phosphorus Based Photopolymer Networks, Vanessa Béland

Electronic Thesis and Dissertation Repository

Photopolymer networks with phosphonium cation, alkyl phosphine and olefin functionality were designed, synthesized and functionalized with metals by metathesis, coordination and hydrometallation reactions, respectively. The materials were strategically designed so that the metal functionalization step could be monitored and quantified. In some cases, this involved characterization by IR, NMR, or X-ray spectroscopic techniques, or by comparison to molecular analogues. It was found that by using a bi-functional photopolymer network, the material could be bi-metallized by orthogonal mechanisms. All metallized polymer networks were tested for their suitability as precursors to metal-containing ceramics. The polymers were pyrolyzed, and on analysis it was …

Strategies For The Preparation Of Functional Pendant Group Polymer Materials Via Click Chemistry, Rajeshwar Vasdev

Electronic Thesis and Dissertation Repository

This thesis describes the development of a polymer via a unique masking-unmasking strategy allowing for physical and chemical modification as desired. Modifiable polymers may lead to improved applications in drug delivery, photo-patterning and emissive materials design. In recent years, these potential traits have motivated the search for efficient protocols for the synthetic modification of polymers. Accordingly, click chemistry, characterized by fast, clean and high yielding reactions represents an effective tool for the modification of polymers. To achieve this goal, an efficient methodology is created to incorporate a highly reactive strained alkyne functional group as a modification site to expand the …

The Ghrelin Receptor And Its Appetite For Highly Potent Ghrelin Analogues, Tyler J. Lalonde

Electronic Thesis and Dissertation Repository

The growth hormone secretagogue receptor-1a (GHS-R1a) is expressed in many human tissues, most notably the hypothalamus, and causes an increase in appetite upon activation by its endogenous ligand, ghrelin. GHS-R1a is differentially expressed in malignant compared to benign tumours. Therefore, there is an interest in developing GHS-R1a-targeted peptides as novel drugs to modulate signaling for diseases such as cancer cachexia and obesity and to image the receptor for disease diagnosis and following progression.

Chapter 2 discusses a fluorescently labelled ghrelin analogue for imaging GHS-R1a in ex vivo biopsy analysis and in vivo distribution studies. The analogue was created through side-chain …

Synthesis And Characterization Of Peptide Nucleic Acids Incorporating Modified Nucleobases, Ali Heidari

Electronic Thesis and Dissertation Repository

Peptide Nucleic Acid (PNA), is a mimic of natural nucleic acids with exceptional binding properties. As such, numerous applications in biochemistry, medicine and biotechnology for PNA exist or have been proposed so far. Pseudo-complementary PNAs containing diaminopurine and thiouracil base pairs have been prepared and are shown to bind with high specificity and efficiency to complementary targets in double-stranded DNA by a mechanism termed ‘‘double duplex invasion’’ in which the duplex is unwound and both DNA strands are targeted simultaneously, each by one of the two pseudo-complementary PNAs. Chapter 2 describes a method for the preparation of modified nucleic acids …

Synthesis, Characterization, And Applications Of Group 13 And 14 Complexes Of Chelating Formazanate Ligands, Ryan R. Maar

Electronic Thesis and Dissertation Repository

This thesis describes the synthesis and characterization of group 13 (boron and aluminum) and group 14 (silicon, germanium, and tin) complexes supported by chelating formazanate [R¹-N-N=C(R³)-N=N-R⁵]^‒ ligands. The resulting complexes are redox-active and often luminescent. Chapters two to four describe the synthesis and characterization of boron formazanate adducts. The work in these chapters demonstrates that through structural modification of the formazanate ligand, solid-state- and NIR photoluminescence can be achieved. Furthermore, the formation of an oxoborane (B=O) afforded a highly photoluminescent formazanate adduct due to the structural rigidity imposed by the B=O bond. These …

Development Of Bioorthogonal Molecular Tools On Gold Nanoparticles, Wilson Luo

Electronic Thesis and Dissertation Repository

This thesis describes the development of bioorthogonal chemical tools — originally designed to form bonds cleanly and selectively in living systems — on gold nanoparticles (AuNPs) as a model reactive nanomaterial template to showcase chemical modifications in a facile and robust manner. To achieve this goal, new methodologies to cleanly incorporate strained alkyne (SA) and cargo-bearing triarylphosphine derivatives onto AuNPs were developed. The protocols described herein provide well-defined reactive AuNP interfaces that undergo bioorthogonal bond-forming and breaking reactions cleanly, selectively, and rapidly to enable chemical tuning of their properties and function.

In order to circumvent the high reactivity of SAs, …

Development Of In Situ Forming Hydrogels For Intra-Articular Drug Delivery, Andy Prince

Electronic Thesis and Dissertation Repository

Hydrogels are 3-dimensional crosslinked polymer networks that can absorb significant amounts of water. The physical properties associated with hydrogels affords them resemblance to biological tissues making them good candidates for biomedical applications. Many pharmaceuticals, specifically non-steroidal anti-inflammatory drugs (NSAIDs), have poor aqueous solubility, which limits their bioavailability and efficacy. People suffering from chronic osteoarthritis (OA) are required to frequently take large doses to mitigate pain, which can lead to serious side effects. Hydrogels are good strategies to deliver NSAIDs via articular injection because they can form solid gels in situ. This thesis describes the synthesis, formulation, mechanical testing, in …

Photo-Isomerizable Complementary Hydrogen Bond Arrays, Jeffrey S. Pleizier

Electronic Thesis and Dissertation Repository

The use of light as an external stimulus provides a non-invasive technique to induce large changes in physical and chemical properties of a substrate. The incorporation of a photochromic subunit into supramolecular polymeric systems therefore adds a potential "smart" quality for polymer manipulation. The azo moiety (-N=N-) is one of the most popular photochromic units as the trans to cis isomerization results in a large degree of spatial rearrangement. This present thesis exploits the azo group by its incorporation into complementary hydrogen bonded complexes. Hydrogen bonding acceptor groups attached to the periphery of the central azo photoswitch provided strong complexation …

Synthesis And Characterization Of Alkynyl-Substituted Boron Formazanate Dyes, Alex Van Belois

Electronic Thesis and Dissertation Repository

This thesis outlines the synthesis and characterization of the first alkynyl-substituted boron formazanate complexes and explores the electronic and structural changes that occur in these systems as a result of chemical modification at the boron centre. An alkynyl-substituted complex appended with a redox-active handle is also described, and the chemical reduction and oxidation of this system is explored. Finally, a model reaction is examined as a proof of concept toward the post-synthetic modification of these boron formazanate systems through copper(I)-assisted alkyne-azide cycloaddition chemistry. Exploiting chemistry at the boron centre opens up new possibilities toward incorporating function onto the boron formazanate …

The Development Of Metal Complexes As Components Of Fluorescent And Nuclear Imaging Probes, William Turnbull

Electronic Thesis and Dissertation Repository

The advent of molecular imaging as a discipline has drastically improved our ability to understand the biochemical and cellular events that drive life, death and disease. This thesis will document the discovery of new metal chelators for Re/^99mTc, new methods of incorporating these metals into peptide structures, as well as new fluorescent compounds. These novel methods and compounds may be used in the development of molecular imaging probes for single photon emission computed tomography (SPECT) and optical imaging techniques, with applications for differentiating cancerous tissue from benign and healthy.

Chapter 2 discusses the development of a dual modality …

Effects Of High Pressure On Photochemical Reactivity Of Organic Molecular Materials Probed By Vibrational Spectroscopy, Jiwen Guan

Electronic Thesis and Dissertation Repository

Chemical transformations of molecular materials induced by high pressure and light radiation exhibit novel and intriguing aspects that have attracted much attention in recent years. Particularly, under the two stimuli, entire transformations of molecular species can be realized in condensed phases without employing additional chemical constraints, e.g., the need of solvents, catalysts or radical initiators. This new synthetic approach in chemistry therefore satisfies increasing need for production methods with reduced environmental impacts. Motivated by these promises, my Ph. D thesis focuses on this state-of-the-art branch of high-pressure photochemistry. Specifically, high pressure is employed to create the necessary reaction conditions to …